Characterization of the region of the aryl hydrocarbon receptor required for ligand dependency of transactivation using chimeric receptor between Drosophila and Mus musculus
Abstract
The aryl hydrocarbon receptor (AhR) is a ligand-activated transcriptional factor. Although 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) is high affinity and toxic to many vertebrate animals, invertebrate AhRs including Drosophila melanogaster AhR (spineless) have no ability to bind exogenous chemicals as ligands. To analyze the ligand-binding domain (LBD) of AhR, we used chimeras between mouse and Drosophila AhR. The chimeric AhR revealed that the LBD determines constitutive transactivation in Drosophila AhR or ligand-dependent activation in mouse AhR. The LBD was further divided into three blocks that corresponded to amino acids 230-300, 301-361, and 361-420 of the mouse sequence. Six chimeric proteins clarified that amino acids 291-350 of the Drosophila LBD, i.e. the middle region, were required to keep the protein in the active form in the absence of ligand binding, whereas in the mouse AhR, this region was required to maintain the protein in the inactive form in the absence of ligand. Furthermore, Arg346 in the middle region of the mouse LBD, was identified as amino acids that were critical for AhR activation by site-directed mutagenesis.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
A prior investigation employing chimeric AHR proteins from mouse and drosophila demonstrated that the middle region of the AHR PAS-B domain governs ligand responsiveness in transactivation.
“Intriguingly, a prior investigation employing chimeric AHR proteins from both mouse and drosophila demonstrated that the middle region of the AHR PAS-B domain governs ligand responsiveness in transactivation47 (Supplementary Fig. 9f).”
From Structural basis for the ligand-dependent activation of heterodimeric AHR-ARNT complex (2025) · cites this paper as [47]
dAHR is known to be constitutively active in a ligand-independent manner.
“We then expanded our structural comparison to the dAHR, which is known to be constitutively active in a ligand-independent manner47.”
From Structural basis for the ligand-dependent activation of heterodimeric AHR-ARNT complex (2025) · cites this paper as [47]
Cites
Poland, A., & Knutson, J. C. (1982) · Annual Review of Pharmacology and Toxicology · doi:10.1146/annurev.pa.22.040182.002505 · Cited by 2,515 · see citing works
Denison, M. S., & Nagy, S. R. (2003) · Annual Review of Pharmacology and Toxicology · doi:10.1146/annurev.pharmtox.43.100901.135828 · Cited by 1,895 · see citing works
PAS Domains: Internal Sensors of Oxygen, Redox Potential, and Light
Taylor, B. L., & Zhulin, I. B. (1999) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.63.2.479-506.1999 · Cited by 1,632 · see citing works
INDUCTION OF CYTOCHROME P4501A1
Whitlock, J. P. (1999) · The Annual Review of Pharmacology and Toxicology · doi:10.1146/annurev.pharmtox.39.1.103 · Cited by 1,126 · see citing works
Cloning of the Ah-receptor cDNA reveals a distinctive ligand-activated transcription factor.
Burbach, K. M., Poland, A., & Bradfield, C. A. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.17.8185 · Cited by 831 · see citing works
Aryl hydrocarbon receptors: diversity and evolution
Hahn, M. E. (2002) · Chemico-Biological Interactions · doi:10.1016/s0009-2797(02)00070-4 · Cited by 642 · see citing works
The mammalian basic helix–loop–helix/PAS family of transcriptional regulators
Kewley, R. J., Whitelaw, M. L., & Chapman‐Smith, A. (2003) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/s1357-2725(03)00211-5 · Cited by 590 · see citing works
Ligand binding and activation of the Ah receptor
Denison, M. S., Pandini, A., Nagy, S. R., Baldwin, E. P., & Bonati, L. (2002) · Chemico-Biological Interactions · doi:10.1016/s0009-2797(02)00063-7 · Cited by 485 · see citing works
cDNA cloning and structure of mouse putative Ah receptor
Ema, M., Sogawa, K., Watanabe, N., Chujoh, Y., Matsushita, N., Gotoh, O., Funae, Y., & Fujii-Kuriyama, Y. (1992) · Biochemical and Biophysical Research Communications · doi:10.1016/0006-291x(92)91185-s · Cited by 395 · see citing works
Safe, S. H. (1995) · Pharmacology & Therapeutics · doi:10.1016/0163-7258(95)00017-b · Cited by 357 · see citing works
Structure of a biological oxygen sensor: A new mechanism for heme-driven signal transduction
Gong, W., Hao, B., Mansy, S. S., Gonzalez, G., Gilles‐Gonzalez, M., & Chan, M. K. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.26.15177 · Cited by 356 · see citing works
The mechanism of dioxin toxicity: relationship to risk assessment.
Birnbaum, L. S. (1994) · Environmental Health Perspectives · doi:10.1289/ehp.94102s9157 · Cited by 336 · see citing works
Dioxin binding activities of polymorphic forms of mouse and human arylhydrocarbon receptors.
Ema, M., Ohe, N., Suzuki, M., Mimura, J., Sogawa, K., Ikawa, S., & Fujii-Kuriyama, Y. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)46990-6 · Cited by 329 · see citing works
Ashok, M., Turner, C., & Wilson, T. G. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.6.2761 · Cited by 320 · see citing works
Duncan, D. M., Burgess, E. A., & Duncan, I. (1998) · Genes & Development · doi:10.1101/gad.12.9.1290 · Cited by 278 · see citing works
High frequency mutagenesis by a DNA methyltransferase
Shen, J., Rideout, W. M., & Jones, P. A. (1992) · Cell · doi:10.1016/s0092-8674(05)80057-1 · Cited by 262 · see citing works
Denison, M. S., Fisher, J. M., & Whitlock, J. P. (1988) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.85.8.2528 · Cited by 254 · see citing works
Induction of cytochrome P4501A1: a model for analyzing mammalian gene transcription
Whitlock, J. P., Okino, S. T., Dong, U., Ko, H. P., Katzenberg, R. H., Ma, Q., & Li, H. (1996) · The FASEB Journal · doi:10.1096/fasebj.10.8.8666157 · Cited by 248 · see citing works
Pellequer, J., Wager‐Smith, K., Kay, S. A., & Getzoff, E. D. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.11.5884 · Cited by 227 · see citing works
Characterization of the Drosophila Methoprene ‐tolerant gene product
Miura, K., Oda, M., Makita, S., & Chinzei, Y. (2005) · FEBS Journal · doi:10.1111/j.1742-4658.2005.04552.x · Cited by 218 · see citing works
Karchner, S. I., Franks, D. G., Kennedy, S. W., & Hahn, M. E. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0509950103 · Cited by 207 · see citing works
Remembrance of things PAS: regulation of development by bHLH–PAS proteins
Crews, S. T., & Fan, C. (1999) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(99)00003-9 · Cited by 198 · see citing works
Sonnenfeld, M. J., Ward, M. P., Nystrom, G. J., Mosher, J. T., Stahl, S., & Crews, S. T. (1997) · Development · doi:10.1242/dev.124.22.4571 · Cited by 193 · see citing works
Powell‐Coffman, J. A., Bradfield, C. A., & Wood, W. B. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.6.2844 · Cited by 188 · see citing works
Distinct response to dioxin in an arylhydrocarbon receptor (AHR)-humanized mouse
Moriguchi, T., Motohashi, H., Hosoya, T., Nakajima, O., Takahashi, S., Ohsako, S., Aoki, Y., Nishimura, N., Tohyama, C., Fujii-Kuriyama, Y., et al. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1037886100 · Cited by 164 · see citing works
Butler, R. A., Kelley, M. L., Powell, W. H., Hahn, M. E., & Beneden, R. J. V. (2001) · Gene · doi:10.1016/s0378-1119(01)00724-7 · Cited by 160 · see citing works
Emmons, R. B., Duncan, D. M., Estes, P. A., Kiefel, P., Mosher, J. T., Sonnenfeld, M. J., Ward, M. P., Duncan, I., & Crews, S. T. (1999) · Development · doi:10.1242/dev.126.17.3937 · Cited by 130 · see citing works
OKEY, A., FRANC, M., MOFFAT, I., TIJET, N., BOUTROS, P., KORKALAINEN, M., TUOMISTO, J., & POHJANVIRTA, R. (2005) · Toxicology and Applied Pharmacology · doi:10.1016/j.taap.2004.12.028 · Cited by 122 · see citing works
Definition of a Dioxin Receptor Mutant That Is a Constitutive Activator of Transcription
McGuire, J., Okamoto, K., Whitelaw, M. L., Tanaka, H., & Poellinger, L. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m105607200 · Cited by 102 · see citing works
Lees, M. J., & Whitelaw, M. L. (1999) · Molecular and Cellular Biology · doi:10.1128/mcb.19.8.5811 · Cited by 95 · see citing works
Backlund, M., & Ingelman‐Sundberg, M. (2004) · Molecular Pharmacology · doi:10.1124/mol.65.2.416 · Cited by 85 · see citing works
Jacobs, M. N., Dickins, M., & Lewis, D. F. V. (2003) · The Journal of Steroid Biochemistry and Molecular Biology · doi:10.1016/s0960-0760(03)00021-9 · Cited by 65 · see citing works
Identification of amino acid residues in the Ah receptor involved in ligand binding
Goryo, K., Suzuki, A., Carpio, C. A. D., Siizaki, K., Kuriyama, E., Mikami, Y., Kinoshita, K., Yasumoto, K., Rannug, A., Miyamoto, A., et al. (2007) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2006.12.227 · Cited by 64 · see citing works
A model for recognition of polychlorinated dibenzo‐<i>p</i>‐dioxins by the aryl hydrocarbon receptor
Procopio, M., Lahm, A., Tramontano, A., Bonati, L., & Pitea, D. (2002) · European Journal of Biochemistry · doi:10.1046/j.0014-2956.2002.02619.x · Cited by 61 · see citing works
Evidence that ligand binding is a key determinant of Ah receptor-mediated transcriptional activity
Murray, I. A., Reen, R. K., Leathery, N., Ramadoss, P., Bonati, L., Gonzalez, F. J., Peters, J. M., & Perdew, G. H. (2005) · Archives of Biochemistry and Biophysics · doi:10.1016/j.abb.2005.07.014 · Cited by 41 · see citing works
Jiang, L., & Crews, S. T. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m703803200 · Cited by 26 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
The AhR twist: ligand-dependent AhR signaling and pharmaco-toxicological implications
Guyot, E., Chevallier, A., Barouki, R., & Coumoul, X. (2012) · Drug Discovery Today · doi:10.1016/j.drudis.2012.11.014 · Cited by 143 · see citing works
Diversity as opportunity: Insights from 600 million years of AHR evolution
Hahn, M. E., Karchner, S. I., & Merson, R. R. (2017) · Current Opinion in Toxicology · doi:10.1016/j.cotox.2017.02.003 · Cited by 134 · see citing works
“vertebrate) AHR ligands [13,16,34] and there is some evidence for constitutive, ligand-independent activity [32,42,50], it is also possible that there are endogenous ligands or other regulatory mechanisms involved [51-53].”
Dioxins, the aryl hydrocarbon receptor and the central regulation of energy balance
Lindén, J., Lensu, S., Tuomisto, J., & Pohjanvirta, R. (2010) · Frontiers in Neuroendocrinology · doi:10.1016/j.yfrne.2010.07.002 · Cited by 107 · see citing works
“that the drosophila AHR homolog is constitutively active [232].”
The aryl hydrocarbon receptor: structure, signaling, physiology and pathology
Coumoul, X., Barouki, R., Esser, C., Haarmann‐Stemmann, T., Lawrence, B. P., Lehmann, J., Moura‐Alves, P., Murray, I. A., Opitz, C. A., Perdew, G. H., et al. (2026) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-025-02500-8 · Cited by 103 · see citing works
“135,136 This suggested the existence of a speci fi c D α -”
Immunological Relevance of the Coevolution of IDO1 and AHR
Jaronen, M., & Quintana, F. (2014) · Frontiers in Immunology · doi:10.3389/fimmu.2014.00521 · Cited by 80 · see citing works
“Moreover, in certain cells spineless appears to be constitutively active (43).”
BackgroundBrinkmann, V., Ale-Agha, N., Haendeler, J., & Ventura, N. (2020) · Frontiers in Physiology · doi:10.3389/fphys.2019.01561 · Cited by 71 · see citing works
Structural insight into the ligand binding mechanism of aryl hydrocarbon receptor
Dai, S., Qu, L., Li, J., Zhang, Y., Jiang, L., Wei, H., Guo, M., Chen, X., & Chen, Y. (2022) · Nature Communications · doi:10.1038/s41467-022-33858-w · Cited by 71 · see citing works
Structural basis for the ligand-dependent activation of heterodimeric AHR-ARNT complex
Diao, X., Shang, Q., Guo, M., Huang, Y., Zhang, M., Chen, X., Liang, Y., Sun, X., Zhou, F., Zhuang, J., et al. (2025) · Nature communications · doi:10.1038/s41467-025-56574-7 · Cited by 72 · see citing works
“We then expanded our structural comparison to the dAHR, which is known to be constitutively active in a ligand-independent manner 47 .”
An Evolutionarily Conserved Role for the Aryl Hydrocarbon Receptor in the Regulation of Movement
Williams, E. G., Mouchiroud, L., Frochaux, M., Pandey, A., Andreux, P. A., Deplancke, B., & Auwerx, J. H. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004673 · Cited by 56 · see citing works
“constitutively active [38] and does not appear to be affected by any exogenous ligands [33].”
BackgroundCamacho‐Jiménez, L., González-Ruiz, R., & Yepiz-Plascencia, G. M. (2023) · Marine Environmental Research · doi:10.1016/j.marenvres.2023.106184 · Cited by 45 · see citing works
Kwong, H.-S., Paloni, M., Grandvuillemin, L., Sirounian, S., Ancelin, A., Lai-Kee-Him, J., Grimaldi, M., Carivenc, C., Lancey, C., Ragan, T. J., et al. (2024) · Journal of Molecular Biology · doi:10.1016/j.jmb.2023.168411 · Cited by 40 · see citing works
The Aryl Hydrocarbon Receptor, Epigenetics and the Aging Process
Abudahab, S., Price, E. T., Dozmorov, M. G., Deshpande, L. S., & McClay, J. L. (2023) · The journal of nutrition health & aging · doi:10.1007/s12603-023-1908-1 · Cited by 19 · see citing works
“A possible explanation is that mammalian AhR is functionally distinct from AhR in invertebrates because the latter does not bind to the canonical ligand TCDD, due to structural differences at the ligand binding domain of the protein (11, 105).”
BackgroundSalzano, M., Marabotti, A., Milanesi, L., & Facchiano, A. M. (2011) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2011.08.039 · Cited by 19 · see citing works
Kasai, S., Ishigaki, T., Takumi, R., Kamimura, T., & Kikuchi, H. (2012) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2012.11.007 · Cited by 17 · see citing works
Self-citationLarigot, L., Bui, L. C., de Bouvier, M., Pierre, O., Pinon, G. M., Fiocca, J., Ozeir, M., Tourette, C., Ottolenghi, C., Imbeaud, S., et al. (2022) · Antioxidants · doi:10.3390/antiox11051030 · Cited by 9 · see citing works
“melanogaster, was found to be constitutively active in vitro, and could explain its inability of ligand activation [58].”
BackgroundAdvances in understanding aryl hydrocarbon receptor structure, function, and modulation
Shang, Q., Khorasanizadeh, S., Diao, X., Rastinejad, F., & Wu, D. (2026) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2026.02.018 · Cited by 4 · see citing works
Ebina, M., Shibazaki, M., Kudo, K., Kasai, S., & Kikuchi, H. (2011) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2011.01.002 · Cited by 4 · see citing works
“1, upper panel), and the results of the reporter gene assay that used mutant F318A, which has no ligand binding ability [40], in the Gal-4 AhR fusion system [41] (Supplemental Fig.”
BackgroundSelf-citationLe récepteur de la dioxine : rôle endogène et médiateur de la toxicité de la dioxine
Chevallier, A., Bui, L. C., & Coumoul, X. (2011) · Cahiers de Nutrition et de Diététique · doi:10.1016/j.cnd.2011.01.002 · Cited by 4 · see citing works
“[64] Kudo K, Takeuchi T, Murakami Y, Ebina M, Kikuchi H.”
BackgroundDrosophila AHR limits tumor growth and stem cell proliferation in the intestine
Tsai, M.-S., Sun, J., Alexandre, C., Shapiro, M., Franchet, A., Li, Y., Gould, A. P., Vincent, J., Stockinger, B., & Diny, N. (2023) · bioRxiv · doi:10.12688/wellcomeopenres.23515.3 · Cited by 3 · see citing works
Invertebrate AHR Homologs: Ancestral Functions in Sensory Systems
Powell‐Coffman, J. A., & Qin, H. (2011) · doi:10.1002/9781118140574.ch28 · Cited by 3 · see citing works
Drosophila AHR limits tumor growth and stem cell proliferation in the intestine
Tsai, M., Sun, J., Alexandre, C., Shapiro, M., Franchet, A., Li, Y., Gould, A. P., Vincent, J., Stockinger, B., & Diny, N. L. (2025) · Wellcome Open Research · doi:10.12688/wellcomeopenres.23515.2 · Cited by 2 · see citing works
Epigenetic Mechanisms in AHR Function
Ko, C., & Puga, A. (2011) · doi:10.1002/9781118140574.ch11 · Cited by 2 · see citing works
“Amino acids 230–421, comprising the PAS-B domain, constitute theminimal ligand binding region [185, 186].”
BackgroundDrosophila AHR limits tumor growth and stem cell proliferation in the intestine
Tsai, M., Sun, J., Alexandre, C., Shapiro, M., Franchet, A., Li, Y., Gould, A. P., Vincent, J., Stockinger, B., & Diny, N. L. (2025) · Wellcome Open Research · doi:10.12688/wellcomeopenres.23515.1 · Cited by 1 · see citing works
Zhao, H., Tan, J., Tang, T., & Dai, S. (2026) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2026.118932
- Authors
- Kudo, K., Takeuchi, T., Murakami, Y., Ebina, M., & Kikuchi, H.
- Affiliations
- Iwate University (JP)
- Tohoku University (JP)
- Hirosaki University (JP)
- Corresponding author
- Kikuchi, Hideaki
- Venue
- Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
- Publisher
- Elsevier BV
- Published
- 2009-06
- Volume
- 1789
- Issue
- 6-8
- Pages
- 477-486
- ISSN
- 1874-9399 (ISSN-L)
- OpenAlex
- W2102844036
- Cited by
- 25
- References
- 36
- Citations by year
- 2026: 3 · 2025: 4 · 2023: 3 · 2022: 2 · 2020: 2 · 2017: 1 · 2014: 2 · 2012: 2
- FWCI
- 1.89
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Physical Sciences › Environmental Science › Health, Toxicology and Mutagenesis › Toxic Organic Pollutants Impact
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Pharmacology › Pharmacogenetics and Drug Metabolism
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Estrogen and related hormone effects
- Keywords
- aryl hydrocarbon receptor, ligand-binding domain, transcriptional activation, chimeric receptors, Drosophila melanogaster, mice, tetrachlorodibenzo-p-dioxin, constitutive activation, ligand-dependent activation, transactivation domain
- MeSH terms
- Polychlorinated Dibenzodioxins, Amino Acid Sequence, Animals, Base Sequence, Binding Sites, Cell Line, Ligands, Models, Molecular, Molecular Sequence Data, Recombinant Fusion Proteins, Species Specificity, Transcriptional Activation, Mutagenesis, Site-Directed, Sequence Homology, Amino Acid, Protein Structure, Tertiary, DNA Primers, Receptors, Aryl Hydrocarbon, Amino Acid Substitution, Drosophila Proteins, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review