Application of mid-infrared chemical imaging and multivariate chemometrics analyses to characterise a population of microalgae cells
Abstract
A suite of multivariate chemometrics methods was applied to a mid-infrared imaging dataset of a eustigmatophyte, marine Nannochloropsis sp. microalgae strain. This includes the improved leader-follower cluster analysis (iLFCA) to interrogate spectra in an unsupervised fashion, a resonant Mie optical scatter correction algorithm (RMieS-EMSC) that improves data linearity, the band-target entropy minimization (BTEM) self-modeling curve resolution for recovering component spectra, and a multi-linear regression (MLR) for estimating relative concentrations and plotting chemical maps of component spectra. A novel Alpha-Stable probability calculation for microalgae cellular lipid-to-protein ratio Λi is introduced for estimating population characteristics.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Water, protein and lipid content of microalgae cells were evaluated on a compositional basis with this technique.
“Water, protein and lipid content of microalgae cells were evaluated on a compositional basis with this technique.”
From Factors Affecting Microalgae Production for Biofuels and the Potentials of Chemometric Methods in Assessing and Optimizing Productivity (2019) · cites this paper as [71]
Estimation of the lipid-to-protein concentration ratio from the statistical cell population distribution was achieved.
“Furthermore, the estimation of lipid-to-protein concentration ratio from the statistical cell population distribution was achieved.”
From Factors Affecting Microalgae Production for Biofuels and the Potentials of Chemometric Methods in Assessing and Optimizing Productivity (2019) · cites this paper as [71]
The study illustrated a technique for lipid-protein estimation statistically without the need for lipid extraction.
“This study illustrated a technique for lipid-protein estimation statistically without the need for lipid extraction, and an additional supporting process i.e., BTEM-MLR was further used to produce concentrations and chemical maps.”
From Factors Affecting Microalgae Production for Biofuels and the Potentials of Chemometric Methods in Assessing and Optimizing Productivity (2019) · cites this paper as [71]
The two iLFCA procedures took only 48 min, showing the effectiveness of the iLFCA algorithm in sorting out 1195 FTIR spectra.
“The two iLFCA procedures took only 48 min, showing the effectiveness of the iLFCA algorithm in sorting out large number (1195) of FTIR spectra.”
From Factors Affecting Microalgae Production for Biofuels and the Potentials of Chemometric Methods in Assessing and Optimizing Productivity (2019) · cites this paper as [71]
The component spectra from the BTEM-MLR accounted for 97% of the signal from the data set.
“The component spectra from the BTEM-MLR accounted for 97% of the signal from the data set.”
From Factors Affecting Microalgae Production for Biofuels and the Potentials of Chemometric Methods in Assessing and Optimizing Productivity (2019) · cites this paper as [71]
In the study by Tan et al., the iLFCA algorithm was effective in sorting out a large number of FTIR spectra.
“The iLFCA algorithm was effective in sorting out a large number of FTIR spectra.”
From Factors Affecting Microalgae Production for Biofuels and the Potentials of Chemometric Methods in Assessing and Optimizing Productivity (2019) · cites this paper as [71]
Energy storage capacity of microalgae relates directly to lipids content, with C12 to C18 chain lengths being the key ones.
“Energy storage capacity of microalgae is also known to relate directly to the lipids content, with C12 to C18 chain lengths being the key ones [2,71].”
From Factors Affecting Microalgae Production for Biofuels and the Potentials of Chemometric Methods in Assessing and Optimizing Productivity (2019) · cites this paper as [71]
The BTEM-MLR was able to differentiate spectra contributions from major and minor comparative signals.
“The BTEM-MLR was also able to differentiate spectra contributions from major and minor comparative signals.”
From Factors Affecting Microalgae Production for Biofuels and the Potentials of Chemometric Methods in Assessing and Optimizing Productivity (2019) · cites this paper as [71]
Cites
Brennan, L., & Owende, P. (2010) · Renewable and Sustainable Energy Reviews · doi:10.1016/j.rser.2009.10.009 · Cited by 4,894 · see citing works
Chen, C.-Y., Yeh, K.-L., Aisyah, R., Lee, D.-J., & Chang, J.-S. (2011) · Bioresource Technology · doi:10.1016/j.biortech.2010.06.159 · Cited by 1,860 · see citing works
Rawat, I., Ranjith Kumar, R., Mutanda, T., & Bux, F. (2011) · Applied Energy · doi:10.1016/j.apenergy.2010.11.025 · Cited by 1,185 · see citing works
A high throughput Nile red method for quantitative measurement of neutral lipids in microalgae
Chen, W., Zhang, C., Song, L., Sommerfeld, M., & Hu, Q. (2009) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2009.01.001 · Cited by 681 · see citing works
A Practical Guide to Heavy Tails: Statistical Techniques and Applications
Lenth, R. V., Alder, R. J., Feldman, R. E., & Taqqu, M. S. (1999) · Journal of the American Statistical Association · doi:10.2307/2670194 · Cited by 639 · see citing works
Infrared and Raman Spectroscopy of Biological Materials
Gremlich, H., & Yan, B. (2000) · CRC Press eBooks · doi:10.1201/b16936 · Cited by 534 · see citing works
Dean, A. P., Sigee, D. C., Estrada, B., & Pittman, J. K. (2010) · Bioresource Technology · doi:10.1016/j.biortech.2010.01.065 · Cited by 523 · see citing works
Effect of nutrients on growth and lipid accumulation in the green algae Dunaliella tertiolecta
Chen, M., Tang, H., Ma, H., Holland, T. C., Ng, K. Y. S., & Salley, S. O. (2010) · Bioresource Technology · doi:10.1016/j.biortech.2010.09.062 · Cited by 502 · see citing works
Shuping, Z., Yulong, W., Mingde, Y., Kaleem, I., Chun, L., & Tong, J. (2010) · Energy · doi:10.1016/j.energy.2010.07.013 · Cited by 461 · see citing works
Bassan, P., Kohler, A., Martens, H., Lee, J., Byrne, H. J., Dumas, P., Gazi, E., Brown, M., Clarke, N., & Gardner, P. (2010) · The Analyst · doi:10.1039/b921056c · Cited by 375 · see citing works
Lévy processes : theory and applications
Barndorff-Nielsen, O. E., Mikosch, T., & Resnick, S. I. (2001) · International Linear Collider · doi:10.1007/978-1-4612-0197-7 · Cited by 340 · see citing works
Enhanced algae growth in both phototrophic and mixotrophic culture under blue light
Das, P., Lei, W., Aziz, S. S., & Obbard, J. P. (2010) · Bioresource Technology · doi:10.1016/j.biortech.2010.11.102 · Cited by 336 · see citing works
Self-citationStehfest, K., Toepel, J., & Wilhelm, C. (2005) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2005.07.001 · Cited by 316 · see citing works
Giordano, M., Kansiz, M., Heraud, P., Beardall, J., Wood, B., & McNaughton, D. (2001) · Journal of Phycology · doi:10.1046/j.1529-8817.2001.037002271.x · Cited by 301 · see citing works
Mohlenhoff, B., Romeo, M., Diem, M., & Wood, B. R. (2005) · Biophysical Journal · doi:10.1529/biophysj.104.057950 · Cited by 235 · see citing works
Development in lipid analysis: Some new extraction techniques and in situ transesterification
Carrapiso, A. I., & Garcı́a, C. (2000) · Lipids · doi:10.1007/s11745-000-0633-8 · Cited by 192 · see citing works
Simionato, D., Sforza, E., Corteggiani Carpinelli, E., Bertucco, A., Giacometti, G. M., & Morosinotto, T. (2011) · Bioresource Technology · doi:10.1016/j.biortech.2011.02.100 · Cited by 190 · see citing works
Chew, W., Widjaja, E., & Garland, M. (2002) · Organometallics · doi:10.1021/om0108752 · Cited by 164 · see citing works
Self-citationComparative evaluation and selection of a method for lipid and fatty acid extraction from macroalgae
Kumari, P., Reddy, C. R. K., & Jha, B. (2011) · Analytical Biochemistry · doi:10.1016/j.ab.2011.04.010 · Cited by 155 · see citing works
Widjaja, E., Li, C., Chew, W., et al. (2003) · Analytical Chemistry · doi:10.1021/ac0263622 · Cited by 146 · see citing works
Self-citationLEVY-STABLE DISTRIBUTIONS REVISITED: TAIL INDEX > 2 DOES NOT EXCLUDE THE LEVY-STABLE REGIME
Weron, R. (n.d.) · RePEc: Research Papers in Economics · Cited by 115 · see citing works
LEVY-STABLE DISTRIBUTIONS REVISITED: TAIL INDEX > 2 DOES NOT EXCLUDE THE LEVY-STABLE REGIME
WERON, R. (2001) · International Journal of Modern Physics C · doi:10.1142/s0129183101001614 · Cited by 111 · see citing works
Carrasco-Pancorbo, A., Navas-Iglesias, N., & Cuadros-Rodríguez, L. (2009) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2008.12.005 · Cited by 100 · see citing works
Landmark writings in Western mathematics, 1640-1940
(2005) · Choice Reviews Online · doi:10.5860/choice.43-1000 · Cited by 99 · see citing works
Improved Nile Red staining of Nannochloropsis sp.
Doan, T.-T. Y., & Obbard, J. P. (2011) · Journal of Applied Phycology · doi:10.1007/s10811-010-9608-5 · Cited by 96 · see citing works
Self-citation(2006) · Elsevier eBooks · doi:10.1016/b978-0-12-370502-0.x5000-0 · Cited by 92 · see citing works
Li, G., & Doss, H. (1993) · The Annals of Statistics · doi:10.1214/aos/1176349151 · Cited by 66 · see citing works
Vibrational biospectroscopy: from plants to animals to humans. A historical perspective
Shaw, R. A., & Mantsch, H. H. (1999) · Journal of Molecular Structure · doi:10.1016/s0022-2860(98)00648-6 · Cited by 62 · see citing works
Analysis of the nutritional status of algae by Fourier transform infrared chemical imaging
Hirschmugl, C. J., Bayarri, Z.-E., Bunta, M., Holt, J. B., & Giordano, M. (2006) · Infrared Physics & Technology · doi:10.1016/j.infrared.2006.01.032 · Cited by 56 · see citing works
Palmucci, M., & Giordano, M. (2011) · Environmental and Experimental Botany · doi:10.1016/j.envexpbot.2011.07.005 · Cited by 22 · see citing works
Kee, B. H., Sim, W., & Chew, W. (2006) · Analytica Chimica Acta · doi:10.1016/j.aca.2006.04.031 · Cited by 17 · see citing works
Self-citationSubcellular localized chemical imaging of benthic algal nutritional content via HgCdTe array FT-IR
Murdock, J. N., Dodds, W. K., & Wetzel, D. L. (2008) · Vibrational Spectroscopy · doi:10.1016/j.vibspec.2007.12.011 · Cited by 17 · see citing works
Xu, W., Chen, K., Liang, D., et al. (2008) · Analytical Biochemistry · doi:10.1016/j.ab.2008.12.026 · Cited by 15 · see citing works
Tan, S.-T., Chen, K., Ong, S., et al. (2008) · The Analyst · doi:10.1039/b718458a · Cited by 12 · see citing works
Self-citationTan, S.-T., & Chew, W. (2012) · RSC Advances · doi:10.1039/c2ra20495a · Cited by 2 · see citing works
Self-citation
Flagged first, then by citations
Cited by
Sorted by citations
Musa, M., Ayoko, G. A., Ward, A., Rösch, C., Brown, R. J., & Rainey, T. J. (2019) · Cells · doi:10.3390/cells8080851 · Cited by 97 · see citing works
Podevin, M., Fotidis, I. A., & Angelidaki, I. (2018) · Critical Reviews in Biotechnology · doi:10.1080/07388551.2017.1398132 · Cited by 34 · see citing works
- Authors
- Tan, S.-T., Balasubramanian, R. K., Das, P., Obbard, J. P., & Chew, W.
- Affiliations
- Agency for Science, Technology and Research (SG)
- Corresponding author
- Chew, Wee
- Venue
- Bioresource Technology
- Publisher
- Elsevier BV
- Published
- 2013-04
- Volume
- 134
- Pages
- 316-323
- ISSN
- 0960-8524 (ISSN-L)
- OpenAlex
- W2053967833
- Cited by
- 15
- References
- 35
- Citations by year
- 2025: 2 · 2023: 1 · 2022: 2 · 2021: 1 · 2020: 2 · 2019: 3 · 2017: 1 · 2015: 1 · 2014: 2
- FWCI
- 0.95
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Bioresource Technology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Institute of Chemical and Engineering Sciences
- Topics
- Physical Sciences › Chemistry › Analytical Chemistry › Spectroscopy and Chemometric Analyses
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biophysics › Spectroscopy Techniques in Biomedical and Chemical Research
- Physical Sciences › Energy › Renewable Energy, Sustainability and the Environment › Algal biology and biofuel production
- Keywords
- Nannochloropsis, eustigmatophytes, self-modeling curve resolution, multiple linear regression, lipid/protein ratio, marine microalgae
- MeSH terms
- Algorithms, Infrared Rays, Lipids, Proteins, Regression Analysis, Scattering, Radiation, Singapore, Soybean Oil, Multivariate Analysis, Cluster Analysis, Spectroscopy, Fourier Transform Infrared, Entropy, Microalgae, Databases, Chemical
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review