Development of highly efficient, low-cost lignocellulolytic enzyme systems in the post-genomic era

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

Cantarel, B. L., Coutinho, P. M., Rancurel, C., Bernard, T., Lombard, V., & Henrissat, B. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn663 · Cited by 5,947 · see citing works

Lignocellulosic residues: Biodegradation and bioconversion by fungi

Sánchez, C. (2008) · Biotechnology Advances · doi:10.1016/j.biotechadv.2008.11.001 · Cited by 1,697 · see citing works

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

Warnecke, F., Luginbühl, P., Ivanova, N., Ghassemian, M., Richardson, T. H., Stege, J. T., Cayouette, M., McHardy, A. C., Djordjevic, G., Aboushadi, N., et al. (2007) · Nature · doi:10.1038/nature06269 · Cited by 1,351 · see citing works

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

Hess, M., Sczyrba, A., Egan, R., Kim, T.-W., Chokhawala, H., Schroth, G., Luo, S., Clark, D. S., Chen, F., Zhang, T., et al. (2011) · Science · doi:10.1126/science.1200387 · Cited by 1,319 · see citing works

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

Martinez, D. A., Berka, R. M., Henrissat, B., Saloheimo, M., Arvas, M., Baker, S., Chapman, J., Chertkov, O., Coutinho, P. M., Cullen, D., et al. (2008) · Nature Biotechnology · doi:10.1038/nbt1403 · Cited by 1,239 · see citing works

Enzymatic conversion of lignocellulose into fermentable sugars: challenges and opportunities

Jørgensen, H., Kristensen, J. B., & Felby, C. (2007) · Biofuels, Bioproducts and Biorefining · doi:10.1002/bbb.4 · Cited by 1,143 · see citing works

How biotech can transform biofuels

Lynd, L. R., Laser, M. S., Bransby, D., Dale, B. E., Davison, B., Hamilton, R., Himmel, M., Keller, M., McMillan, J. D., Sheehan, J., et al. (2008) · Nature Biotechnology · doi:10.1038/nbt0208-169 · Cited by 1,121 · see citing works

A review of lignocellulose bioconversion using enzymatic hydrolysis and synergistic cooperation between enzymes—Factors affecting enzymes, conversion and synergy

van Dyk, J. S., & Pletschke, B. I. (2012) · Biotechnology Advances · doi:10.1016/j.biotechadv.2012.03.002 · Cited by 1,018 · see citing works

The challenge of enzyme cost in the production of lignocellulosic biofuels

Klein‐Marcuschamer, D., Oleśkowicz-Popiel, P., Simmons, B. A., & Blanch, H. W. (2011) · Biotechnology and Bioengineering · doi:10.1002/bit.24370 · Cited by 1,000 · see citing works

Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

Martinez, D. A., Larrondo, L. F., Putnam, N. H., Gelpke, M. D. S., Huang, K. H., Chapman, J., Helfenbein, K. G., Ramaiya, P., Detter, J. C., Larimer, F. W., et al. (2004) · Nature Biotechnology · doi:10.1038/nbt967 · Cited by 933 · see citing works

Structure and Action Mechanism of Ligninolytic Enzymes

Wong, D. W. S. (2008) · Applied Biochemistry and Biotechnology · doi:10.1007/s12010-008-8279-z · Cited by 895 · see citing works

Substrate and Enzyme Characteristics that Limit Cellulose Hydrolysis

Mansfield, S. D., Mooney, C., & Saddler, J. N. (1999) · Biotechnology Progress · doi:10.1021/bp9900864 · Cited by 869 · see citing works

A versatile toolkit for high throughput functional genomics with Trichoderma reesei

Schuster, A., Bruno, K. S., Collett, J. R., Baker, S., Seiboth, B., Kubicek, C. P., & Schmoll, M. (2012) · Biotechnology for Biofuels · doi:10.1186/1754-6834-5-1 · Cited by 834 · see citing works

Directed evolution of industrial enzymes: an update.

Cherry, J., & Fidantsef, A. (2003) · Current Opinion in Biotechnology · doi:10.1016/s0958-1669(03)00099-5 · Cited by 778 · see citing works

Progress and Challenges in Enzyme Development for Biomass Utilization

Merino, S. T., & Cherry, J. R. (2007) · Advances in biochemical engineering, biotechnology · doi:10.1007/10_2007_066 · Cited by 654 · see citing works

Inhibition of cellulase, xylanase and β-glucosidase activities by softwood lignin preparations

Berlin, A., Balakshin, M. Y., Gilkes, N. R., Kadla, J. F., Maximenko, V., Kubo, S., & Saddler, J. N. (2006) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2006.02.021 · Cited by 636 · see citing works

Transcriptional regulation of plant cell wall degradation by filamentous fungi

Aro, N., Pakula, T., & Penttilä, M. E. (2004) · FEMS Microbiology Reviews · doi:10.1016/j.femsre.2004.11.006 · Cited by 616 · see citing works

Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris

Berka, R. M., Grigoriev, I. V., Otillar, R., Salamov, A. A., Grimwood, J., Reid, I. D., Ishmael, N., John, T., Darmond, C., Moisan, M.-C., et al. (2011) · Nature Biotechnology · doi:10.1038/nbt.1976 · Cited by 502 · see citing works

Transcriptional Regulation of Biomass-degrading Enzymes in the Filamentous Fungus Trichoderma reesei

Foreman, P. K., Brown, D., Dankmeyer, L., Dean, R. A., Diener, S. E., Dunn-Coleman, N. S., Goedegebuur, F., Houfek, T. D., England, G. J., Kelley, A. S., et al. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m304750200 · Cited by 476 · see citing works

Cellulases and biofuels

Wilson, D. B. (2009) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2009.05.007 · Cited by 448 · see citing works

Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina

Kubicek, C. P., Mikus, M., Schuster, A., Schmoll, M., & Seiboth, B. (2009) · Biotechnology for Biofuels · doi:10.1186/1754-6834-2-19 · Cited by 424 · see citing works

Optimization of enzyme complexes for lignocellulose hydrolysis

Berlin, A., Maximenko, V., Gilkes, N. R., & Saddler, J. N. (2006) · Biotechnology and Bioengineering · doi:10.1002/bit.21238 · Cited by 413 · see citing works

BRENDA, the enzyme information system in 2011

Scheer, M., Grote, A., Chang, A., Schomburg, I., Munaretto, C., Rother, M., Sohngen, C., Stelzer, M., Thiele, J., & Schomburg, D. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkq1089 · Cited by 409 · see citing works

Lignocellulose: A chewy problem

Sanderson, K. (2011) · Nature · doi:10.1038/474s012a · Cited by 406 · see citing works

Alternatives to Trichoderma reesei in biofuel production

Gusakov, A. V. (2011) · Trends in biotechnology · doi:10.1016/j.tibtech.2011.04.004 · Cited by 402 · see citing works

Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi

Coradetti, S. T., Craig, J. P., Xiong, Y., Shock, T. L., Tian, C., & Glass, N. L. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1200785109 · Cited by 365 · see citing works

Thermostable Enzymes in Lignocellulose Hydrolysis

Viikari, L., Alapuranen, M., Puranen, T., Vehmaanperä, J., & Siika‐aho, M. (2007) · Springer eBooks · doi:10.1007/10_2007_065 · Cited by 362 · see citing works

Development and application of a suite of polysaccharide-degrading enzymes for analyzing plant cell walls

Bauer, Š., Vasu, P., Persson, S., Mort, A. J., & Somerville, C. R. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0604632103 · Cited by 351 · see citing works

Fungal enzyme sets for plant polysaccharide degradation

van den Brink, J., & Vries, R. P. (2011) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-011-3473-2 · Cited by 351 · see citing works

Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa

Tian, C., Beeson, W. T., Iavarone, A. T., Sun, J., Marletta, M. A., Cate, J. H. D., & Glass, N. L. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0906810106 · Cited by 335 · see citing works

Cellodextrin Transport in Yeast for Improved Biofuel Production

Galazka, J. M., Tian, C., Beeson, W. T., Martinez, B., Glass, N. L., & Cate, J. H. D. (2010) · Science · doi:10.1126/science.1192838 · Cited by 326 · see citing works

Engineering of protein secretion in yeast: strategies and impact on protein production

Idiris, A., Tohda, H., Kumagai, H., & Takegawa, K. (2010) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-010-2447-0 · Cited by 324 · see citing works

Enzymatic saccharification of wheat straw for bioethanol production by a combined cellulase xylanase and feruloyl esterase treatment

Tabka, M. G., Herpoël‐Gimbert, I., Monod, F., Asther, M., & Sigoillot, J. (2006) · Enzyme and Microbial Technology · doi:10.1016/j.enzmictec.2006.01.021 · Cited by 292 · see citing works

Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi

King, B. C., Waxman, K. D., Nenni, N. V., Walker, L. P., Bergstrom, G. C., & Gibson, D. M. (2011) · Biotechnology for Biofuels · doi:10.1186/1754-6834-4-4 · Cited by 289 · see citing works

Comparative secretome analyses of two Trichoderma reesei RUT-C30 and CL847 hypersecretory strains

Herpoël‐Gimbert, I., Margeot, A., Dolla, A. R., Jan, G., Mollé, D., Lignon, S., Mathis, H., Sigoillot, J., Monot, F., & Asther, M. (2008) · Biotechnology for Biofuels · doi:10.1186/1754-6834-1-18 · Cited by 286 · see citing works

Effect of xylanase supplementation of cellulase on digestion of corn stover solids prepared by leading pretreatment technologies

Kumar, R., & Wyman, C. E. (2009) · Bioresource Technology · doi:10.1016/j.biortech.2008.11.057 · Cited by 285 · see citing works

ACEI of Trichoderma reesei Is a Repressor of Cellulase and Xylanase Expression

Aro, N., Ilmén, M., Saloheimo, A., & Penttilä, M. E. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.1.56-65.2003 · Cited by 281 · see citing works

Hemicellulases and auxiliary enzymes for improved conversion of lignocellulosic biomass to monosaccharides

Gao, D., Uppugundla, N., Chundawat, S. P. S., Yu, X., Hermanson, S., Gowda, K., Brumm, P. J., Mead, D. A., Balan, V., & Dale, B. E. (2011) · Biotechnology for Biofuels · doi:10.1186/1754-6834-4-5 · Cited by 272 · see citing works

Proteomic Analysis of Extracellular Proteins from Aspergillus oryzae Grown under Submerged and Solid-State Culture Conditions

Oda, K., Kakizono, D., Yamada, O., Iefuji, H., Akita, O., & Iwashita, K. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.72.5.3448-3457.2006 · Cited by 267 · see citing works

A family of thermostable fungal cellulases created by structure-guided recombination

Heinzelman, P., Snow, C. D., Wu, I., Nguyen, C., Villalobos, A., Govindarajan, S., Minshull, J., & Arnold, F. H. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0901417106 · Cited by 267 · see citing works

Improving Enzymes for Biomass Conversion: A Basic Research Perspective

Banerjee, G., Scott‐Craig, J. S., & Walton, J. D. (2010) · BioEnergy Research · doi:10.1007/s12155-009-9067-5 · Cited by 244 · see citing works

Fungal peroxidases: molecular aspects and applications

Conesa, A., Punt, P. J., & van den Hondel, C. A. M. J. J. (2002) · Journal of Biotechnology · doi:10.1016/s0168-1656(01)00394-7 · Cited by 237 · see citing works

Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins

Znameroski, E. A., Coradetti, S. T., Roche, C. M., Tsai, J. C., Iavarone, A. T., Cate, J. H. D., & Glass, N. L. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1118440109 · Cited by 233 · see citing works

Enzymatic properties of cellulases from Humicola insolens

Schülein, M. (1997) · Journal of Biotechnology · doi:10.1016/s0168-1656(97)00090-4 · Cited by 230 · see citing works

The putative protein methyltransferase LAE1 controls cellulase gene expression in Trichoderma reesei

Seiboth, B., Aghcheh, R. K., Phatale, P. A., Linke, R. B., Hartl, L., Sauer, D. G., Smith, K., Baker, S., Freitag, M., & Kubicek, C. P. (2012) · Molecular Microbiology · doi:10.1111/j.1365-2958.2012.08083.x · Cited by 215 · see citing works

The Two Major Xylanases from Trichoderma Reesei: Characterization of Both Enzymes and Genes

Törrönen, A., Mach, R. L., Messner, R., Gonzalez, R., Kalkkinen, N., Harkki, A. M., & Kubicek, C. P. (1992) · Nature Biotechnology · doi:10.1038/nbt1192-1461 · Cited by 213 · see citing works

Genomic and Secretomic Analyses Reveal Unique Features of the Lignocellulolytic Enzyme System of Penicillium decumbens

Liu, G., Zhang, L., Wei, X., Zou, G., Qin, Y., Ma, L., Li, J., Zheng, H., Wang, S., Wang, C., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0055185 · Cited by 212 · see citing works

Cellulases, xylanases, β-glucosidase and ferulic acid esterase produced by Trichoderma and Aspergillus act synergistically in the hydrolysis of sugarcane bagasse

Gottschalk, L. M. F., de Oliveira, R. A., & Bon, E. P. S. (2010) · Biochemical Engineering Journal · doi:10.1016/j.bej.2010.05.003 · Cited by 210 · see citing works

Two Cellobiohydrolase-Encoding Genes from Aspergillus niger Require d -Xylose and the Xylanolytic Transcriptional Activator XlnR for Their Expression

Gielkens, M. M. C., Dekkers, E., Visser, J., & de Graaff, L. H. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.10.4340-4345.1999 · Cited by 208 · see citing works

Enzymatic in situ saccharification of cellulose in aqueous-ionic liquid media

Kamiya, N., Matsushita, Y., Hanaki, M., Nakashima, K., Narita, M., Goto, M., & Takahashi, H. (2008) · Biotechnology Letters · doi:10.1007/s10529-008-9638-0 · Cited by 207 · see citing works

Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing

Crom, S. L., Schackwitz, W., Pennacchio, L. A., Magnuson, J. K., Culley, D. E., Collett, J. R., Martin, J., Druzhinina, I. S., Mathis, H., Monot, F., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0905848106 · Cited by 206 · see citing works

Genetic Modification of Carbon Catabolite Repression in Trichoderma reesei for Improved Protein Production

Nakari‐Setälä, T., Paloheimo, M., Kallio, J., Vehmaanperä, J., Penttilä, M. E., & Saloheimo, M. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.00282-09 · Cited by 201 · see citing works

Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates

Häkkinen, M., Arvas, M., Oja, M., Aro, N., Penttilä, M. E., Saloheimo, M., & Pakula, T. (2012) · Microbial Cell Factories · doi:10.1186/1475-2859-11-134 · Cited by 201 · see citing works

Mixture optimization of six core glycosyl hydrolases for maximizing saccharification of ammonia fiber expansion (AFEX) pretreated corn stover

Gao, D., Chundawat, S. P. S., Krishnan, C., Balan, V., & Dale, B. E. (2009) · Bioresource Technology · doi:10.1016/j.biortech.2009.10.056 · Cited by 200 · see citing works

Identification of the CRE-1 Cellulolytic Regulon in Neurospora crassa

Sun, J., & Glass, N. L. (2011) · PLoS ONE · doi:10.1371/journal.pone.0025654 · Cited by 197 · see citing works

Deciphering Transcriptional Regulatory Mechanisms Associated with Hemicellulose Degradation in Neurospora crassa

Sun, J., Tian, C., Diamond, S., & Glass, N. L. (2012) · Eukaryotic Cell · doi:10.1128/ec.05327-11 · Cited by 188 · see citing works

Microbial enzyme systems for biomass conversion: emerging paradigms

Himmel, M. E., Xu, Q., Luo, Y., Ding, S.-Y., Lamed, R., & Bayer, E. A. (2010) · Biofuels · doi:10.4155/bfs.09.25 · Cited by 186 · see citing works

Protein engineering of cellulases

Schülein, M. (2000) · Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology · doi:10.1016/s0167-4838(00)00247-8 · Cited by 181 · see citing works

Substrate specificity of family 5, 6, 7, 9, 12, and 45 endoglucanases

Vlasenko, E., Schülein, M., Cherry, J. R., & Xu, F. (2009) · Bioresource Technology · doi:10.1016/j.biortech.2009.11.057 · Cited by 179 · see citing works

Identification and characterization of a multidomain hyperthermophilic cellulase from an archaeal enrichment

Graham, J. E., Clark, M. E., Nadler, D. C., Huffer, S., Chokhawala, H. A., Rowland, S. E., Blanch, H. W., Clark, D. S., & Robb, F. T. (2011) · Nature Communications · doi:10.1038/ncomms1373 · Cited by 179 · see citing works

Enzyme-assisted extraction of flavonoids from Ginkgo biloba leaves: Improvement effect of flavonol transglycosylation catalyzed by Penicillium decumbens cellulase

Chen, S., Xing, X., Huang, J.-J., & Xu, M.-S. (2010) · Enzyme and Microbial Technology · doi:10.1016/j.enzmictec.2010.09.017 · Cited by 172 · see citing works

High concentration ethanol production from corncob residues by fed-batch strategy

Liu, K., Lin, X., Yue, J., Li, X., Fang, X., Zhu, M., Lin, J., Qu, Y., & Xiao, L. (2009) · Bioresource Technology · doi:10.1016/j.biortech.2009.11.013 · Cited by 171 · see citing works

RESEARCH: Development of a mature fungal technology and production platform for industrial enzymes based on a Myceliophthora thermophila isolate, previously known as Chrysosporium lucknowense C1

Visser, H., Joosten, V., Punt, P. J., Gusakov, A. V., Olson, P. T., Joosten, R., Bartels, J., Visser, J., Sinitsyn, A. P., Emalfarb, M., et al. (2011) · Industrial Biotechnology · doi:10.1089/ind.2011.7.214 · Cited by 170 · see citing works

Systems biological approaches towards understanding cellulase production by Trichoderma reesei

Kubicek, C. P. (2012) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2012.05.020 · Cited by 167 · see citing works

Rapid optimization of enzyme mixtures for deconstruction of diverse pretreatment/biomass feedstock combinations

Banerjee, G., Car, S., Scott‐Craig, J. S., Borrusch, M. S., & Walton, J. D. (2010) · Biotechnology for Biofuels · doi:10.1186/1754-6834-3-22 · Cited by 166 · see citing works

The cargo and the transport system: secreted proteins and protein secretion in Trichoderma reesei (Hypocrea jecorina)

Saloheimo, M., & Pakula, T. (2011) · Microbiology · doi:10.1099/mic.0.053132-0 · Cited by 164 · see citing works

Evaluation of Minimal Trichoderma reesei Cellulase Mixtures on Differently Pretreated Barley Straw Substrates

Rosgaard, L., Pedersen, S., Langston, J., Akerhielm, D., Cherry, J. R., & Meyer, A. S. (2007) · Biotechnology Progress · doi:10.1021/bp070329p · Cited by 162 · see citing works

Improvement of cellulase activity in Trichoderma reesei by heterologous expression of a beta-glucosidase gene from Penicillium decumbens

Ma, L., Zhang, J., Zou, G., Wang, C., & Zhou, Z. (2011) · Enzyme and Microbial Technology · doi:10.1016/j.enzmictec.2011.06.013 · Cited by 159 · see citing works

A new Zn(II)2Cys6-type transcription factor BglR regulates β-glucosidase expression in Trichoderma reesei

Nitta, M., Furukawa, T., Shida, Y., Mori, K., Kuhara, S., Morikawa, Y., & Ogasawara, W. (2012) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2012.02.009 · Cited by 159 · see citing works

Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis

Couturier, M., Navarro, D., Olivé, C., Chevret, D., Haon, M., Favel, A., Lesage‐Meessen, L., Henrissat, B., Coutinho, P. M., & Berrin, J. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-57 · Cited by 156 · see citing works

Quantitative Secretomic Analysis of Trichoderma reesei Strains Reveals Enzymatic Composition for Lignocellulosic Biomass Degradation

Adav, S. S., Chao, L. T., & Sze, S. K. (2012) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m111.012419 · Cited by 155 · see citing works

Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae

Coutinho, P. M., Andersen, M. R., Kolenová, K., vanKuyk, P., Benoit, I., Gruben, B. S., Trejo-Aguilar, B. A., Visser, H., van Solingen, P., & Pakula, T. (2009) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2008.07.020 · Cited by 153 · see citing works

Status and prospect of lignocellulosic bioethanol production in China

Fang, X., Shen, Y., Zhao, J., Bao, X., & Qu, Y. (2009) · Bioresource Technology · doi:10.1016/j.biortech.2009.11.050 · Cited by 149 · see citing works

The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate

Lü, X., Sun, J., Nimtz, M., Wissing, J. B., Zeng, A., & Rinas, U. (2010) · Microbial Cell Factories · doi:10.1186/1475-2859-9-23 · Cited by 143 · see citing works

Reduced genomic potential for secreted plant cell-wall-degrading enzymes in the ectomycorrhizal fungus Amanita bisporigera, based on the secretome of Trichoderma reesei

Nagendran, S., Hallen‐Adams, H. E., Paper, J. M., Aslam, N., & Walton, J. D. (2009) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2009.02.001 · Cited by 142 · see citing works

Transformation System for Hypocrea jecorina ( Trichoderma reesei ) That Favors Homologous Integration and Employs Reusable Bidirectionally Selectable Markers

Steiger, M. G., Vitikainen, M., Uskonen, P., Brunner, K., Adam, G., Pakula, T., Penttilä, M. E., Saloheimo, M., Mach, R. L., & Mach-Aigner, A. R. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.02100-10 · Cited by 140 · see citing works

Construction of a cellulase hyper-expression system in Trichoderma reesei by promoter and enzyme engineering

Zou, G., Shi, S., Jiang, Y., van den Brink, J., de Vries, R. P., Chen, L., Zhang, J., Ma, L., Wang, C., & Zhou, Z. (2012) · Microbial Cell Factories · doi:10.1186/1475-2859-11-21 · Cited by 137 · see citing works

The G-Alpha Protein GNA3 of Hypocrea jecorina (Anamorph Trichoderma reesei ) Regulates Cellulase Gene Expression in the Presence of Light

Schmoll, M., Schuster, A., Silva, R. N., & Kubicek, C. P. (2009) · Eukaryotic Cell · doi:10.1128/ec.00256-08 · Cited by 137 · see citing works

Roles of Protein Kinase A and Adenylate Cyclase in Light-Modulated Cellulase Regulation in Trichoderma reesei

Schuster, A., Tisch, D., Seidl‐Seiboth, V., Kubicek, C. P., & Schmoll, M. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.06959-11 · Cited by 134 · see citing works

Enzyme production by filamentous fungi: analysis of the secretome of Trichoderma reesei grown on unconventional carbon source

Jun, H., Kieselbach, T., & Jönsson, L. J. (2011) · Microbial Cell Factories · doi:10.1186/1475-2859-10-68 · Cited by 130 · see citing works

High‐throughput microplate technique for enzymatic hydrolysis of lignocellulosic biomass

Chundawat, S. P. S., Balan, V., & Dale, B. E. (2008) · Biotechnology and Bioengineering · doi:10.1002/bit.21805 · Cited by 129 · see citing works

Efficiency of New Fungal Cellulase Systems in Boosting Enzymatic Degradation of Barley Straw Lignocellulose

Rosgaard, L., Pedersen, S. L., Cherry, J. R., Harris, P., & Meyer, A. S. (2006) · Biotechnology Progress · doi:10.1021/bp050361o · Cited by 128 · see citing works

Enhanced Enzymatic Hydrolysis of Lignocellulose by Optimizing Enzyme Complexes

Zhang, M., Su, R., Qi, W. D., & He, Z. (2009) · Applied Biochemistry and Biotechnology · doi:10.1007/s12010-009-8602-3 · Cited by 126 · see citing works

Construction of a recombinant Trichoderma reesei strain expressing Aspergillus aculeatus β‐glucosidase 1 for efficient biomass conversion

Nakazawa, H., Kawai, T., Ida, N., Shida, Y., Kobayashi, Y., Okada, H., Tani, S., Sumitani, J., Kawaguchi, T., Morikawa, Y., et al. (2011) · Biotechnology and Bioengineering · doi:10.1002/bit.23296 · Cited by 126 · see citing works

Development of the cellulolytic fungus Trichoderma reesei strain with enhanced β-glucosidase and filter paper activity using strong artifical cellobiohydrolase 1 promoter

Zhang, J., Zhong, Y., Zhao, X., & Wang, T. (2010) · Bioresource Technology · doi:10.1016/j.biortech.2010.07.078 · Cited by 125 · see citing works

Engineering of vesicle trafficking improves heterologous protein secretion in Saccharomyces cerevisiae

Hou, J., Tyo, K. E. J., Liu, Z., Petranović, D., & Nielsen, J. (2012) · Metabolic Engineering · doi:10.1016/j.ymben.2012.01.002 · Cited by 125 · see citing works

New insights into the mechanism of light modulated signaling by heterotrimeric G-proteins: ENVOY acts on gna1 and gna3 and adjusts cAMP levels in Trichoderma reesei (Hypocrea jecorina)

Tisch, D., Kubicek, C. P., & Schmoll, M. (2011) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2010.12.009 · Cited by 124 · see citing works

Enzymatic hydrolyzing performance of Acremonium cellulolyticus and Trichoderma reesei against three lignocellulosic materials

Fujii, T., Fang, X., Inoue, H., Murakami, K., & Sawayama, S. (2009) · Biotechnology for Biofuels · doi:10.1186/1754-6834-2-24 · Cited by 124 · see citing works

Protein engineering in designing tailored enzymes and microorganisms for biofuels production

Wen, F., Nair, N. U., & Zhao, H. (2009) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2009.07.001 · Cited by 122 · see citing works

Directed evolution for engineering pH profile of endoglucanase III from Trichoderma reesei

Wang, T., Liu, X., Yu, Q., Zhang, X., Qu, Y., Gao, P., & Wang, T. (2005) · Biomolecular Engineering · doi:10.1016/j.bioeng.2004.10.003 · Cited by 121 · see citing works

Synthetic multi-component enzyme mixtures for deconstruction of lignocellulosic biomass

Banerjee, G., Car, S., Scott‐Craig, J. S., Borrusch, M. S., Bongers, M., & Walton, J. D. (2010) · Bioresource Technology · doi:10.1016/j.biortech.2010.07.028 · Cited by 120 · see citing works

Standard assays do not predict the efficiency of commercial cellulase preparations towards plant materials

Kabel, M. A., van der Maarel, M. J. E. C., Klip, G., Voragen, A. G. J., & Schols, H. A. (2005) · Biotechnology and Bioengineering · doi:10.1002/bit.20685 · Cited by 119 · see citing works

Genes regulated by AoXlnR, the xylanolytic and cellulolytic transcriptional regulator, in Aspergillus oryzae

Noguchi, Y., Sano, M., Kanamaru, K., Ko, T., Takeuchi, M., Kato, M., & Kobayashi, T. (2009) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-009-2236-9 · Cited by 117 · see citing works

Synthetic enzyme mixtures for biomass deconstruction: Production and optimization of a core set

Banerjee, G., Car, S., Scott‐Craig, J. S., Borrusch, M. S., Aslam, N., & Walton, J. D. (2010) · Biotechnology and Bioengineering · doi:10.1002/bit.22741 · Cited by 117 · see citing works

Crucial factors of the light perception machinery and their impact on growth and cellulase gene transcription in Trichoderma reesei

Castellanos, F. J., Schmoll, M., Martínez, P., Tisch, D., Kubicek, C. P., Herrera‐Estrella, A., & Naranjo, E. U. E. (2010) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2010.02.001 · Cited by 117 · see citing works

Improvementof Foreign-Protein Production in Aspergillus niger var. awamori by Constitutive Induction of the Unfolded-ProteinResponse

Valkonen, M. J., Ward, M. P., Wang, H., Penttilä, M. E., & Saloheimo, M. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.12.6979-6986.2003 · Cited by 116 · see citing works

The effect of specific growth rate on protein synthesis and secretion in the filamentous fungus Trichoderma reesei

Pakula, T., Salonen, K., Uusitalo, J. M., & Penttilä, M. E. (2005) · Microbiology · doi:10.1099/mic.0.27458-0 · Cited by 113 · see citing works

Differential Involvement of β-Glucosidases from Hypocrea jecorina in Rapid Induction of Cellulase Genes by Cellulose and Cellobiose

Zhou, Q., Xu, J., Kou, Y., Lv, X., Zhang, X., Zhao, G., Zhang, W., Chen, G., & Liu, W. (2012) · Eukaryotic Cell · doi:10.1128/ec.00170-12 · Cited by 112 · see citing works

Application of metagenomic techniques in mining enzymes from microbial communities for biofuel synthesis

Xing, M., Zhang, X., & Huang, H. (2012) · Biotechnology Advances · doi:10.1016/j.biotechadv.2012.01.021 · Cited by 108 · see citing works

Curation of characterized glycoside hydrolases of Fungal origin

Murphy, C., Powlowski, J. B., Wu, M. H., Butler, G., & Tsang, A. (2011) · Database · doi:10.1093/database/bar020 · Cited by 105 · see citing works

Efficient screening of fungal cellobiohydrolase class I enzymes for thermostabilizing sequence blocks by SCHEMA structure-guided recombination

Heinzelman, P., Komor, R. S., Kanaan, A., Romero, P. A., Yu, X., Mohler, S., Snow, C. D., & Arnold, F. H. (2010) · Protein Engineering Design and Selection · doi:10.1093/protein/gzq063 · Cited by 104 · see citing works

Identification of genes encoding microbial glucuronoyl esterases

Li, X.-L., Špániková, S., de Vries, R. P., & Biely, P. (2007) · FEBS Letters · doi:10.1016/j.febslet.2007.07.041 · Cited by 103 · see citing works

The phosducin-like protein PhLP1 impacts regulation of glycoside hydrolases and light response in Trichoderma reesei

Tisch, D., Kubicek, C. P., & Schmoll, M. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-613 · Cited by 101 · see citing works

Podospora anserina Hemicellulases Potentiate the Trichoderma reesei Secretome for Saccharification of Lignocellulosic Biomass

Couturier, M., Haon, M., Coutinho, P. M., Henrissat, B., Lesage‐Meessen, L., & Berrin, J. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.01761-10 · Cited by 101 · see citing works

Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the FungiPreprint

Cornell, M. J., Alam, I. S., Soanes, D. M., Wong, H. M., Hedeler, C., Paton, N. W., Rattray, M., Hubbard, S. J., Talbot, N. J., & Oliver, S. G. (2007) · Genome Research · doi:10.1101/gr.6531807 · Cited by 100 · see citing works

Mining metagenomes for novel cellulase genes

Duan, C., & Feng, J. (2010) · Biotechnology Letters · doi:10.1007/s10529-010-0356-z · Cited by 99 · see citing works

Quantitative Proteomic Approach for Cellulose Degradation by Neurospora crassa

Phillips, C. M., Iavarone, A. T., & Marletta, M. A. (2011) · Journal of Proteome Research · doi:10.1021/pr200329b · Cited by 99 · see citing works

Simultaneous saccharification and fermentation of acid-pretreated corncobs with a recombinant Saccharomyces cerevisiae expressing β-glucosidase

Shen, Y., Zhang, Y., Ma, T., Bao, X., Du, F., Zhuang, G., & Qu, Y. (2007) · Bioresource Technology · doi:10.1016/j.biortech.2007.09.046 · Cited by 98 · see citing works

Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties

Vitikainen, M., Arvas, M., Pakula, T., Oja, M., Penttilä, M. E., & Saloheimo, M. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-441 · Cited by 98 · see citing works

Directed evolution of endoglucanase III (Cel12A) from Trichoderma reesei

Nakazawa, H., Okada, K., Onodera, T., Ogasawara, W., Okada, H., & Morikawa, Y. (2009) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-009-1901-3 · Cited by 96 · see citing works

Engineering endoglucanase II from Trichoderma reesei to improve the catalytic efficiency at a higher pH optimum

Qin, Y., Wei, X., Song, X., & QU, Y. (2008) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2008.03.016 · Cited by 95 · see citing works

Expression of lignocellulolytic enzymes in Pichia pastoris

Mellitzer, A., Weís, R., Glieder, A., & Flicker, K. (2012) · Microbial Cell Factories · doi:10.1186/1475-2859-11-61 · Cited by 93 · see citing works

Proteomics-based Compositional Analysis of Complex Cellulase–Hemicellulase Mixtures

Chundawat, S. P. S., Lipton, M. S. W., Purvine, S. O., Uppugundla, N., Gao, D., Balan, V., & Dale, B. E. (2011) · Journal of Proteome Research · doi:10.1021/pr101234z · Cited by 91 · see citing works

Electrokinetic transport of red blood cells in microcapillaries

Minerick, A. R., Ostafin, A., & Chang, H. (2002) · Electrophoresis · doi:10.1002/1522-2683(200207)23:14 · Cited by 91 · see citing works

Cellulolytic Enzyme Production and Enzymatic Hydrolysis for Second-Generation Bioethanol Production

Wang, M., Li, Z., Fang, X., Wang, L., & Qu, Y. (2012) · Advances in biochemical engineering, biotechnology · doi:10.1007/10_2011_131 · Cited by 90 · see citing works

Three α‐Galactosidase Genes of Trichoderma reesei Cloned by Expression in Yeast

Margolles‐Clark, E., Tenkanen, M., Luonteri, E., & Penttilä, M. E. (1996) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1996.0104h.x · Cited by 88 · see citing works

A glucoamylase::GFP gene fusion to study protein secretion by individual hyphae of Aspergillus niger

Gordon, C. L., Archer, D. B., Jeenes, D. J., Doonan, J. H., Wells, B. L., Trinci, A. P. J., & Robson, G. D. (2000) · Journal of Microbiological Methods · doi:10.1016/s0167-7012(00)00170-6 · Cited by 88 · see citing works

Isolation and characterization of a β-glucosidase from Penicillium decumbens and improving hydrolysis of corncob residue by using it as cellulase supplementation

Chen, M., Qin, Y., Liu, Z., Liu, K., Wang, F., & Qu, Y. (2010) · Enzyme and Microbial Technology · doi:10.1016/j.enzmictec.2010.01.008 · Cited by 88 · see citing works

Overexpression of an exotic thermotolerant β-glucosidase in trichoderma reesei and its significant increase in cellulolytic activity and saccharification of barley straw

Dashtban, M., & Qin, W. (2012) · Microbial Cell Factories · doi:10.1186/1475-2859-11-63 · Cited by 86 · see citing works

Microbial β-glucosidases from cow rumen metagenome enhance the saccharification of lignocellulose in combination with commercial cellulase cocktail

del Pozo, M. V., Fernández‐Arrojo, L., Gil-Martínez, J., Montesinos, A., Chernikova, T. N., Nechitaylo, T. Y., Waliszek, A., Tortajada, M., Rojas, A., Huws, S., et al. (2012) · Biotechnology for Biofuels · doi:10.1186/1754-6834-5-73 · Cited by 85 · see citing works

Genome shuffling improves production of cellulase byPenicillium decumbensJU-A10

Cheng, Y., Song, X., Qin, Y., & Qu, Y. (2009) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2009.04362.x · Cited by 83 · see citing works

Heterologous expression of Pycnoporus cinnabarinus cellobiose dehydrogenase in Pichia pastoris and involvement in saccharification processes

Bey, M., Berrin, J., Poidevin, L., & Sigoillot, J. (2011) · Microbial Cell Factories · doi:10.1186/1475-2859-10-113 · Cited by 83 · see citing works

Optimization of a synthetic mixture composed of major Trichoderma reesei enzymes for the hydrolysis of steam-exploded wheat straw

Billard, H., Faraj, A., Ferreira, N. L., Menir, S., & Heiss‐Blanquet, S. (2012) · Biotechnology for Biofuels · doi:10.1186/1754-6834-5-9 · Cited by 82 · see citing works

Light-dependent roles of the G-protein α subunit GNA1 of Hypocrea jecorina (anamorph Trichoderma reesei)

Seibel, C., Gremel, G., Silva, R. N., Schuster, A., Kubicek, C. P., & Schmoll, M. (2009) · BMC Biology · doi:10.1186/1741-7007-7-58 · Cited by 82 · see citing works

Proteomic Analysis of pH and Strains Dependent Protein Secretion of Trichoderma reesei

Adav, S. S., Ravindran, A., Chao, L. T., Tan, L., Singh, S., & Sze, S. K. (2011) · Journal of Proteome Research · doi:10.1021/pr200416t · Cited by 81 · see citing works

A time course analysis of the extracellular proteome of Aspergillus nidulans growing on sorghum stover

Saykhedkar, S., Ray, A., Ayoubi-Canaan, P., Hartson, S. D., Prade, R. A., & Mort, A. J. (2012) · Biotechnology for Biofuels · doi:10.1186/1754-6834-5-52 · Cited by 81 · see citing works

Metabolic Engineering of the Morphology of Aspergillus oryzae by Altering Chitin Synthesis

Müller, C. R., McIntyre, M., Hansen, K., & Nielsen, J. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.4.1827-1836.2002 · Cited by 81 · see citing works

Calnexin Overexpression Increases Manganese Peroxidase Production in Aspergillus niger

Conesa, A., Jeenes, D. J., Archer, D. B., van den Hondel, C. A. M. J. J., & Punt, P. J. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.2.846-851.2002 · Cited by 81 · see citing works

A homologous production system for Trichoderma reesei secreted proteins in a cellulase-free background

Uzbaş, F., Sezerman, O. U., Hartl, L., Kubicek, C. P., & Seiboth, B. (2011) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-011-3674-8 · Cited by 80 · see citing works

The Penicillium echinulatum Secretome on Sugar Cane Bagasse

Ribeiro, D. A., Cota, J., Alvarez, T. M., Brüchli, F., Bragatto, J., Pereira, B. M. P., Pauletti, B. A., Jackson, G., Pimenta, M. T. B., Murakami, M. T., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0050571 · Cited by 79 · see citing works

Fusarium verticillioides secretome as a source of auxiliary enzymes to enhance saccharification of wheat straw

Ravalason, H., Grisel, S., Chevret, D., Favel, A., Berrin, J., Sigoillot, J., & Herpoël‐Gimbert, I. (2012) · Bioresource Technology · doi:10.1016/j.biortech.2012.03.009 · Cited by 78 · see citing works

Comparative performance of precommercial cellulases hydrolyzing pretreated corn stover

McMillan, J. D., Jennings, E. W., Mohagheghi, A., & Zuccarello, M. (2011) · Biotechnology for Biofuels · doi:10.1186/1754-6834-4-29 · Cited by 75 · see citing works

Exploring the Natural Fungal Biodiversity of Tropical and Temperate Forests toward Improvement of Biomass Conversion

Berrin, J., Navarro, D., Couturier, M., Olivé, C., Grisel, S., Haon, M., Taussac, S., Lechat, C., Courtecuisse, R., Favel, A., et al. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.01651-12 · Cited by 73 · see citing works

Studies on cellulosic ethanol production for sustainable supply of liquid fuel in China

Qu, Y., Zhu, M., Liu, K., Bao, X., & Lin, J. (2006) · Biotechnology Journal · doi:10.1002/biot.200600067 · Cited by 71 · see citing works

Genome-wide expression analysis upon constitutive activation of the HacA bZIP transcription factor in Aspergillus niger reveals a coordinated cellular response to counteract ER stress

Carvalho, N. D. S. P., Jørgensen, T. R., Arentshorst, M., Nitsche, B. M., van den Hondel, C. A. M. J. J., Archer, D. B., & Ram, A. F. J. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-350 · Cited by 70 · see citing works

Hemicellulase production in Chrysosporium lucknowense C1

Hinz, S. W. A., Pouvreau, L. A. M., Joosten, R., Bartels, J., Jonathan, M. C., Wery, J., & Schols, H. A. (2009) · Journal of Cereal Science · doi:10.1016/j.jcs.2009.07.005 · Cited by 69 · see citing works

The composition of basal and induced cellulase systems in Penicillium decumbens under induction or repression conditions

Sun, X., Liu, Z., Zheng, K., Song, X., & Qu, Y. (2008) · Enzyme and Microbial Technology · doi:10.1016/j.enzmictec.2008.01.020 · Cited by 67 · see citing works

Correlation of gene expression and protein production rate - a system wide study

Arvas, M., Pakula, T., Smit, B., Rautio, J. J., Koivistoinen, H., Jouhten, P., Lindfors, E., Wiebe, M. G., Penttilä, M. E., & Saloheimo, M. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-616 · Cited by 67 · see citing works

Fungal polysaccharide monooxygenases: new players in the decomposition of cellulose

Žifčáková, L., & Baldrián, P. (2012) · Fungal ecology · doi:10.1016/j.funeco.2012.05.001 · Cited by 65 · see citing works

Development of a highly efficient gene targeting system allowing rapid genetic manipulations in Penicillium decumbens

Li, Z., Du, C., Zhong, Y., & Wang, T. (2010) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-010-2566-7 · Cited by 64 · see citing works

Highly thermostable fungal cellobiohydrolase I (Cel7A) engineered using predictive methods

Komor, R. S., Romero, P. A., Xie, C. B., & Arnold, F. H. (2012) · Protein Engineering Design and Selection · doi:10.1093/protein/gzs058 · Cited by 64 · see citing works

Acceleration of ethanol production from paper mill waste fiber by supplementation with β-glucosidase

Xin, Z., Qu, Y., & Peiji, G. (1993) · Enzyme and Microbial Technology · doi:10.1016/0141-0229(93)90117-k · Cited by 63 · see citing works

Hypocrea jecorina CEL6A protein engineering

Lantz, S. E., Goedegebuur, F., Hommes, R. W. J., Kaper, T., Kelemen, B. R., Mitchinson, C., WALLACE, L. A., Ståhlberg, J., & Larenas, E. A. (2010) · Biotechnology for Biofuels · doi:10.1186/1754-6834-3-20 · Cited by 63 · see citing works

N-Glycoform Diversity of Cellobiohydrolase I from Penicillium decumbens and Synergism of Nonhydrolytic Glycoform in Cellulose Degradation

Gao, L., Gao, F., Wang, L., Geng, C., Chi, L., Zhao, J., & Qu, Y. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.332890 · Cited by 62 · see citing works

Overexpression of native PSE1 and SOD1 in Saccharomyces cerevisiae improved heterologous cellulase secretion

Kroukamp, H., den Haan, R., van Wyk, N., & van Zyl, W. H. (2012) · Applied Energy · doi:10.1016/j.apenergy.2012.05.062 · Cited by 61 · see citing works

Heat shock response improves heterologous protein secretion in Saccharomyces cerevisiae

Hou, J., Österlund, T., Liu, Z., Petranović, D., & Nielsen, J. (2012) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-012-4596-9 · Cited by 60 · see citing works

Enhanced production of cellobiohydrolases in Trichoderma reesei and evaluation of the new preparations in biofinishing of cotton

Miettinen‐Oinonen, A., Paloheimo, M., Lantto, R., & Suominen, P. L. (2004) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2004.10.017 · Cited by 60 · see citing works

Effects of salts on activity of halophilic cellulase with glucomannanase activity isolated from alkaliphilic and halophilic Bacillus sp. BG-CS10

Zhang, G., Li, S., Xue, Y., Mao, L., & Ma, Y. (2011) · Extremophiles · doi:10.1007/s00792-011-0403-2 · Cited by 60 · see citing works

Kinetic model for batch cellulase production by Trichoderma reesei RUT C30

Velkovska, S., Marten, M. R., & Ollis, D. F. (1997) · Journal of Biotechnology · doi:10.1016/s0168-1656(97)01669-6 · Cited by 59 · see citing works

Enzymic Release of Reducing Sugars from Oat Hulls by Cellulase, as Influenced by Aspergillus Ferulic Acid Esterase and Trichoderma Xylanase

Yu, P., McKinnon, J. J., Maenz, D. D., Olkowski, A. A., Racz, V. J., & Christensen, D. A. (2002) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf020476x · Cited by 56 · see citing works

Proteomics analysis of “Rovabio™ Excel”, a secreted protein cocktail from the filamentous fungus Penicillium funiculosum grown under industrial process fermentation

Guais, O., Borderies, G., Pichereaux, C., Maestracci, M., Neugnot, V., Rossignol, M., & François, J. (2008) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-008-0430-x · Cited by 52 · see citing works

Evaluation of Glycosyl Hydrolases in the Secretome of Aspergillus fumigatus and Saccharification of Alkali-Treated Rice Straw

Sharma, M. B., Soni, R., Nazir, A., Oberoi, H. S., & Chadha, B. S. (2010) · Applied Biochemistry and Biotechnology · doi:10.1007/s12010-010-9064-3 · Cited by 51 · see citing works

Isolation and Identification of Cellulose-Binding Proteins from Sheep Rumen Contents

Toyoda, A., Iio, W., Mitsumori, M., & Minato, H. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.01838-08 · Cited by 47 · see citing works

High-Temperature Enzymatic Breakdown of Cellulose

Wang, H., Squina, F. M., Segato, F., Mort, A. J., Lee, D., Pappan, K. L., & Prade, R. A. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.00199-11 · Cited by 47 · see citing works

Characterization of a novel thermostable β-glucosidase from a metagenomic library of termite gut

Wang, Q., Qian, C., Zhang, X., Liu, N. X., Yan, X., & Zhou, Z. (2012) · Enzyme and Microbial Technology · doi:10.1016/j.enzmictec.2012.07.015 · Cited by 46 · see citing works

Protein production and induction of the unfolded protein response in Trichoderma reesei strain Rut‐C30 and its transformant expressing endoglucanase I with a hydrophobic tag

Collén, A., Saloheimo, M., Bailey, M., Penttilä, M. E., & Pakula, T. (2004) · Biotechnology and Bioengineering · doi:10.1002/bit.20350 · Cited by 46 · see citing works

Strategy for Identification of Novel Fungal and Bacterial Glycosyl Hydrolase Hybrid Mixtures that can Efficiently Saccharify Pretreated Lignocellulosic Biomass

Gao, D., Chundawat, S. P. S., Liu, T., Hermanson, S., Gowda, K., Brumm, P. J., Dale, B. E., & Balan, V. (2010) · BioEnergy Research · doi:10.1007/s12155-009-9066-6 · Cited by 45 · see citing works

Extracellular hydrolase profiles of fungi isolated from koala faeces invite biotechnological interest

Peterson, R., Grinyer, J., & Nevalainen, H. K. M. (2010) · Mycological Progress · doi:10.1007/s11557-010-0690-5 · Cited by 45 · see citing works

Cellulase production from spent sulfite liquor and paper-mill waste fiber

Qu, Y., Xin, Z., Peiji, G., & Zunong, W. (1991) · Applied Biochemistry and Biotechnology · doi:10.1007/bf02922615 · Cited by 44 · see citing works

Generation of Large Chromosomal Deletions in Koji Molds Aspergillus oryzae and Aspergillus sojae via a Loop-Out Recombination

Takahashi, T., Jin, F. J., Sunagawa, M., Machida, M., & Koyama, Y. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.00692-08 · Cited by 41 · see citing works

Mapping the polysaccharide degradation potential of Aspergillus niger

Andersen, M. R., Giese, M., de Vries, R. P., & Nielsen, J. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-313 · Cited by 41 · see citing works

Heterologous production of cellobiose dehydrogenases from the basidiomycete Coprinopsis cinerea and the ascomycete Podospora anserina and their effect on saccharification of wheat straw

Turbé-Doan, A., Arfi, Y., Record, É., Alvarado, M. I. E., & Levasseur, A. (2012) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-012-4355-y · Cited by 40 · see citing works

Shotgun Proteomics of Aspergillus niger Microsomes upon d -Xylose Induction

de Oliveira, J. M. P. F., van Passel, M. W. J., Schaap, P. J., & de Graaff, L. H. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.00482-10 · Cited by 40 · see citing works

Purification and characterization of a novel cellobiohydrolase (PdCel6A) from Penicillium decumbens JU-A10 for bioethanol production

Gao, L., Wang, F., Gao, F., Wang, L., Zhao, J., & Qu, Y. (2011) · Bioresource Technology · doi:10.1016/j.biortech.2011.06.033 · Cited by 40 · see citing works

Improved biomass saccharification by Trichoderma reesei through heterologous expression of lacA gene from Trametes sp. AH28-2

Zhang, J., Qu, Y., Xiao, P., Wang, X., Wang, T., & He, F. (2012) · Journal of Bioscience and Bioengineering · doi:10.1016/j.jbiosc.2012.01.016 · Cited by 38 · see citing works

Discovery of Glycoside Hydrolase Enzymes in an Avicel-Adapted Forest Soil Fungal Community by a Metatranscriptomic Approach

Takasaki, K., Miura, T., Kanno, M., Tamaki, H., Hanada, S., Kamagata, Y., & Kimura, N. (2013) · PLoS ONE · doi:10.1371/journal.pone.0055485 · Cited by 37 · see citing works

Proteomic analysis in non-denaturing condition of the secretome reveals the presence of multienzyme complexes in Penicillium purpurogenum

Gonzalez-Vogel, A., Eyzaguirre, J. P., Oleas, G., Callegari, E. A., & Navarrete, M. (2010) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-010-2953-0 · Cited by 32 · see citing works

Molecular characterization of the Aspergillus nidulans fbxA encoding an F-box protein involved in xylanase induction

Colabardini, A. C., Humanes, A. C., de Gouvêa, P. F., Savoldi, M., Goldman, M. H. S., Kress, M. R. V. Z., Bayram, Ö., Oliveira, J., Gomes, M. D., Braus, G. H., et al. (2011) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2011.11.004 · Cited by 28 · see citing works

Transcription analysis of lignocellulolytic enzymes of Penicillium decumbens 114-2 and its catabolite-repression-resistant mutant

Wei, X., Zheng, K., Chen, M., Liu, G., Li, J., Lei, Y., Qin, Y., & Qu, Y. (2011) · Comptes Rendus Biologies · doi:10.1016/j.crvi.2011.06.002 · Cited by 28 · see citing works

13C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose

Jouhten, P., Pitkänen, E., Pakula, T., Saloheimo, M., Penttilä, M. E., & Maaheimo, H. (2009) · BMC Systems Biology · doi:10.1186/1752-0509-3-104 · Cited by 27 · see citing works

Enhancement of β-xylosidase productivity in cellulase producing fungus Acremonium cellulolyticus

Kanna, M., Yano, S., Inoue, H., Fujii, T., & Sawayama, S. (2011) · AMB Express · doi:10.1186/2191-0855-1-15 · Cited by 27 · see citing works

Identification of elevated transcripts in a Trichoderma reesei strain expressing a chimeric transcription activator using suppression subtractive hybridization

Su, X., Chu, X., & Dong, Z. (2009) · World Journal of Microbiology and Biotechnology · doi:10.1007/s11274-009-9993-6 · Cited by 14 · see citing works

Improved cellulase production via disruption of PDE01641 in cellulolytic fungus Penicillium decumbens

Zhang, Y., Zhang, J., Xiao, P., Wang, T., & Qu, Y. (2012) · Bioresource Technology · doi:10.1016/j.biortech.2012.07.101 · Cited by 13 · see citing works

Isolation of cellulolytic enzymes from moldy silage by new culture-independent strategy

Yu, R., Wang, L., Duan, X., & Gao, P. (2007) · Biotechnology Letters · doi:10.1007/s10529-007-9350-5 · Cited by 11 · see citing works

The role of the site 342 in catalytic efficiency and pH optima of endoglucanase II fromTrichoderma reeseias probed by saturation mutagenesis

Qin, Y., Wei, X., Song, X. Y., & Qu, Y. (2008) · Biocatalysis and Biotransformation · doi:10.1080/10242420802249299 · Cited by 8 · see citing works

Superactive cellulase formulation using cellobiohydrolase-1 from Penicillium funiculosum

Adney, W. S. (2011) · OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) · Cited by 1 · see citing works

Overproduction of cellulase by Trichoderma reesei RUT C30 through batch-feeding of synthesized low-cost sugar mixture

Li, Y., Liu, C., Bai, F., & Zhao, X. (2016) · Bioresource Technology · doi:10.1016/j.biortech.2016.05.108 · Cited by 153 · see citing works

Progress and challenges in the engineering of non-cellulolytic microorganisms for consolidated bioprocessing

den Haan, R., van Rensburg, E., Rose, S. H., Görgens, J. F., & van Zyl, W. H. (2014) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2014.10.003 · Cited by 151 · see citing works

Engineering of filamentous fungi for efficient conversion of lignocellulose: Tools, recent advances and prospects

Liu, G., & Qu, Y. (2018) · Biotechnology Advances · doi:10.1016/j.biotechadv.2018.12.004 · Cited by 133 · see citing works

Development of lignocellulosic biorefineries for the sustainable production of biofuels: Towards circular bioeconomy

Yadav, A., Sharma, V., Tsai, M., Chen, C., Sun, P., Nargotra, P., Wang, J., & Dong, C. (2023) · Bioresource Technology · doi:10.1016/j.biortech.2023.129145 · Cited by 126 · see citing works

Hemicellulases from Penicillium and Talaromyces for lignocellulosic biomass valorization: A review

Méndez-Líter, J. A., de Eugenio, L. I., Nieto‐Domínguez, M., Prieto, A., & Martı́nez, M. J. (2020) · Bioresource Technology · doi:10.1016/j.biortech.2020.124623 · Cited by 124 · see citing works

New biorefineries and sustainable agriculture: Increased food, biofuels, and ecosystem security

Chen, H., & Zhang, Y. ‐. P. (2015) · Renewable and Sustainable Energy Reviews · doi:10.1016/j.rser.2015.02.048 · Cited by 120 · see citing works

Metataxonomic profiling and prediction of functional behaviour of wheat straw degrading microbial consortia

Jiménez, D. J., Dini‐Andreote, F., & van Elsas, J. D. (2014) · Biotechnology for Biofuels · doi:10.1186/1754-6834-7-92 · Cited by 116 · see citing works

Designing cellulolytic enzyme systems for biorefinery: From nature to application

Champreda, V., Mhuantong, W., Lekakarn, H., Bunterngsook, B., Kanokratana, P., Zhao, X., Zhang, F., Inoue, H., Fujii, T., & Eurwilaichitr, L. (2019) · Journal of Bioscience and Bioengineering · doi:10.1016/j.jbiosc.2019.05.007 · Cited by 106 · see citing works

On the production cost of lignocellulose‐degrading enzymes

Ferreira, R. G., Azzoni, A. R., & Freitas, S. (2020) · Biofuels Bioproducts and Biorefining · doi:10.1002/bbb.2142 · Cited by 105 · see citing works

Recent Developments in Lignocellulosic Biofuels, a Renewable Source of Bioenergy

Rai, A. K., Al Makishah, N. H., Wen, Z., Gupta, G., Pandit, S., & Prasad, R. (2022) · Fermentation · doi:10.3390/fermentation8040161 · Cited by 90 · see citing works

Characterization of hemicellulase and cellulase from the extremely thermophilic bacterium Caldicellulosiruptor owensensis and their potential application for bioconversion of lignocellulosic biomass without pretreatment

Peng, X., Qiao, W., Mi, S., Jia, X., Su, H., & Han, Y. (2015) · Biotechnology for Biofuels · doi:10.1186/s13068-015-0313-0 · Cited by 86 · see citing works

Combining manipulation of transcription factors and overexpression of the target genes to enhance lignocellulolytic enzyme production in Penicillium oxalicum

Gao, L., Li, Z., Xia, C., Qu, Y., Liu, M., Yang, P., Yu, L., & Song, X. (2017) · Biotechnology for Biofuels · doi:10.1186/s13068-017-0783-3 · Cited by 83 · see citing works

On-site cellulase production and efficient saccharification of corn stover employing cbh2 overexpressing Trichoderma reesei with novel induction system

Li, Y., Zhang, X., Xiong, L., Mehmood, M. A., Zhao, X., & Bai, F. (2017) · Bioresource Technology · doi:10.1016/j.biortech.2017.04.084 · Cited by 75 · see citing works

Aqueous enzymatic extraction: A green, environmentally friendly and sustainable oil extraction technology

Gao, Y., Ding, Z., Liu, Y., & Xu, Y. (2023) · Trends in Food Science & Technology · doi:10.1016/j.tifs.2023.104315 · Cited by 73 · see citing works

Identification and characterization of core cellulolytic enzymes from Talaromyces cellulolyticus (formerly Acremonium cellulolyticus) critical for hydrolysis of lignocellulosic biomass

Inoue, H., Decker, S. R., Taylor, L. E., Yano, S., & Sawayama, S. (2014) · Biotechnology for Biofuels · doi:10.1186/s13068-014-0151-5 · Cited by 72 · see citing works

Towards efficient bioethanol production from agricultural and forestry residues: Exploration of unique natural microorganisms in combination with advanced strain engineering

Zhao, X., Xiong, L., Zhang, M., & Bai, F. (2016) · Bioresource Technology · doi:10.1016/j.biortech.2016.03.158 · Cited by 69 · see citing works

Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction

Ivanova, C., Ramoni, J., Aouam, T., Frischmann, A., Seiboth, B., Baker, S., Crom, S. L., Lemoine, S., Margeot, A., & Bidard, F. (2017) · Biotechnology for Biofuels · doi:10.1186/s13068-017-0897-7 · Cited by 68 · see citing works

Integrated engineering of enzymes and microorganisms for improving the efficiency of industrial lignocellulose deconstruction

Liu, G., & Qu, Y. (2021) · Engineering Microbiology · doi:10.1016/j.engmic.2021.100005 · Cited by 67 · see citing works

Stepwise enzymatic hydrolysis of alkaline oxidation treated sugarcane bagasse for the co-production of functional xylo-oligosaccharides and fermentable sugars

Li, H., Chen, X., Xiong, L., Luo, M., Chen, X., Wang, C., Huang, C., & Chen, X. (2018) · Bioresource Technology · doi:10.1016/j.biortech.2018.12.063 · Cited by 67 · see citing works

Enzymatic Cellulose Hydrolysis: Enzyme Reusability and Visualization of β-Glucosidase Immobilized in Calcium Alginate

Tsai, C., & Meyer, A. S. (2014) · Molecules · doi:10.3390/molecules191219390 · Cited by 60 · see citing works

Production of highly efficient cellulase mixtures by genetically exploiting the potentials of Trichoderma reesei endogenous cellulases for hydrolysis of corncob residues

Qian, Y., Zhong, L., Gao, J., Sun, N., Wang, Y., Sun, G., Qu, Y., & Zhong, Y. (2017) · Microbial Cell Factories · doi:10.1186/s12934-017-0825-3 · Cited by 51 · see citing works

Lignin‐modifying enzymes: a green and environmental responsive technology for organic compound degradation

Vilar, D. D. S., Bilal, M., Bharagava, R. N., Kumar, A., Nadda, A. K., Salazar-Banda, G. R., Eguiluz, K. I. B., & Ferreira, L. F. R. (2021) · Journal of Chemical Technology & Biotechnology · doi:10.1002/jctb.6751 · Cited by 51 · see citing works

Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype

Lichius, A., Bidard, F., Buchholz, F., Crom, S. L., Martin, J., Schackwitz, W., Austerlitz, T., Grigoriev, I. V., Baker, S., Margeot, A., et al. (2015) · BMC Genomics · doi:10.1186/s12864-015-1526-0 · Cited by 44 · see citing works

CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems

Abot, A., Arnal, G., Auer, L., Lazuka, A., Labourdette, D., Lamarre, S., Trouilh, L., Laville, É., Lombard, V., Potocki-Véronèse, G., et al. (2016) · BMC Genomics · doi:10.1186/s12864-016-2988-4 · Cited by 44 · see citing works

Combined genome and transcriptome sequencing to investigate the plant cell wall degrading enzyme system in the thermophilic fungus Malbranchea cinnamomea

Hüttner, S., Nguyen, T. T., Granchi, Z., Chin‐A‐Woeng, T. F. C., Ahrén, D., Larsbrink, J., Thanh, V. N., & Lisbeth Olsson, A. (2017) · Biotechnology for Biofuels · doi:10.1186/s13068-017-0956-0 · Cited by 44 · see citing works

Optimizing ethanol production by thermotolerant Kluyveromyces marxianus CCT 7735 in a mixture of sugarcane bagasse and ricotta whey

Ferreira, P. G., da Silveira, F. A., dos Santos, R. C. V., Geniêr, H. L. A., Diniz, R. H. S., Ribeiro, J. I., Fietto, L. G., Passos, F. M. L., & da Silveira, W. B. (2015) · Food Science and Biotechnology · doi:10.1007/s10068-015-0182-0 · Cited by 42 · see citing works

Characterization and Strain Improvement of a Hypercellulytic Variant, Trichoderma reesei SN1, by Genetic Engineering for Optimized Cellulase Production in Biomass Conversion Improvement

Qian, Y., Zhong, L., Hou, Y.-H., Qu, Y., & Zhong, Y. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01349 · Cited by 42 · see citing works

Improving lignocellulolytic enzyme production withPenicillium: from strain screening to systems biology

Liu, G., Qin, Y., Li, Z., & Qu, Y. (2013) · Biofuels · doi:10.4155/bfs.13.38 · Cited by 42 · see citing works

Efficient production and evaluation of lignocellulolytic enzymes using a constitutive protein expression system in Penicillium oxalicum

Hu, Y., Xue, H., Liu, G., Song, X., & Qu, Y. (2015) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-015-1607-8 · Cited by 41 · see citing works

Regulation and production of lignocellulolytic enzymes from Trichoderma reesei for biofuels production

Zhang, F., Bunterngsook, B., Li, J., Zhao, X., Champreda, V., Liu, C., & Bai, F. (2019) · Advances in bioenergy · doi:10.1016/bs.aibe.2019.03.001 · Cited by 39 · see citing works

Deletion of the middle region of the transcription factor ClrB in Penicillium oxalicum enables cellulase production in the presence of glucose

Gao, L., Xu, Y., Song, X., Li, S., Xia, C., Xu, J., Qin, Y., Liu, G., & Qu, Y. (2019) · Journal of Biological Chemistry · doi:10.1074/jbc.ra119.010863 · Cited by 37 · see citing works

Effect of highly branched hyphal morphology on the enhanced production of cellulase in Trichoderma reesei DES-15

He, R., Li, C., Ma, L., Zhang, D., & Chen, S. (2016) · 3 Biotech · doi:10.1007/s13205-016-0516-5 · Cited by 36 · see citing works

Metagenomics for the development of new biocatalysts to advance lignocellulose saccharification for bioeconomic development

Montella, S., Amore, A., & Faraco, V. (2015) · Critical Reviews in Biotechnology · doi:10.3109/07388551.2015.1083939 · Cited by 36 · see citing works

Enhancement of an efficient enzyme cocktail from Penicillium consortium on biodegradation of pretreated poplar

Liang, C., Wang, Q., Wang, W., Lin, C. S. K., Hu, Y., & Qi, W. (2022) · Chemical Engineering Journal · doi:10.1016/j.cej.2022.139352 · Cited by 30 · see citing works

Modification of a cellulase system by engineering Penicillium oxalicum to produce cellulose nanocrystal

Yang, T., Guo, Y., Gao, N., Li, X., & Zhao, J. (2020) · Carbohydrate Polymers · doi:10.1016/j.carbpol.2020.115862 · Cited by 30 · see citing works

Production and Characterization of Multi-Polysaccharide Degrading Enzymes from Aspergillus aculeatus BCC199 for Saccharification of Agricultural Residues

Suwannarangsee, S., Arnthong, J., Eurwilaichitr, L., & Champreda, V. (2014) · Journal of Microbiology and Biotechnology · doi:10.4014/jmb.1406.06050 · Cited by 29 · see citing works

Degradation of 2, 2-Dichlorovinyl dimethyl phosphate (dichlorvos) through the rhizosphere interaction between Panicum maximum Jacq and some selected fungi

Asemoloye, M. D., Jonathan, S. G., & Ahmad, R. (2019) · Chemosphere · doi:10.1016/j.chemosphere.2019.01.058 · Cited by 28 · see citing works

An aldonolactonase AltA from Penicillium oxalicum mitigates the inhibition of β-glucosidase during lignocellulose biodegradation

Peng, S., Cao, Q., Qin, Y., Li, X., Liu, G., & Qu, Y. (2017) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-017-8134-7 · Cited by 26 · see citing works

Optimization of on‐site cellulase preparation for efficient hydrolysis of atmospheric glycerol organosolv pretreated wheat straw

Sun, F. F., Mukasekuru, M. R., Tan, L., Ren, J., Huang, Z., Ren, H., & Zhang, Z. (2018) · Journal of Chemical Technology & Biotechnology · doi:10.1002/jctb.5605 · Cited by 26 · see citing works

Tailoring the expression of Xyr1 leads to efficient production of lignocellulolytic enzymes in Trichoderma reesei for improved saccharification of corncob residues

Shen, L., Yan, A., Wang, Y., Wang, Y., Liu, H., & Zhong, Y. (2022) · Biotechnology for Biofuels and Bioproducts · doi:10.1186/s13068-022-02240-9 · Cited by 24 · see citing works

Employing Bifunctional Enzymes for Enhanced Extraction of Bioactives from Plants: Flavonoids as an Example

Xu, M.-S., Chen, S., Wang, W., & Liu, S.-Q. (2013) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf402125y · Cited by 24 · see citing works

Host Organisms:Bacillus subtilis

Hohmann, H., van Dijl, J. M., Krishnappa, L., & Prágai, Z. (2016) · Industrial Biotechnology · doi:10.1002/9783527807796.ch7 · Cited by 23 · see citing works

Bionanoconjugation for Proteomics applications — An overview

da Costa, J. P., Oliveira‐Silva, R., Daniel‐da‐Silva, A. L., & Vitorino, R. M. P. (2014) · Biotechnology Advances · doi:10.1016/j.biotechadv.2014.04.013 · Cited by 22 · see citing works

A new paradigm in lignocellulolytic enzyme cocktail optimization: Free from expert-level prior knowledge and experimental datasets

Gao, L., Yu, Z., Wang, S., Hou, Y., Zhang, S., Zhou, C.-C., & Wu, X. (2023) · Bioresource Technology · doi:10.1016/j.biortech.2023.129758 · Cited by 21 · see citing works

Bacterial valorization of pulp and paper industry process streams and waste

Brown, D. M., Pawlak, J. J., & Grunden, A. M. (2021) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-021-11107-2 · Cited by 20 · see citing works

Engineering the Effector Domain of the Artificial Transcription Factor to Improve Cellulase Production by Trichoderma reesei

Meng, Q.-S., Zhang, F., Wang, W., Liu, C., Zhao, X., & Bai, F. (2020) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2020.00675 · Cited by 19 · see citing works

Lactose-inducted production of a complete lignocellulolytic enzyme system by a novel bacterium Bacillus sp. BS-5 and its application for saccharification of alkali-pretreated corn cob

Xu, J., Gao, Z. Z., Wu, B., & He, B. (2017) · Cellulose · doi:10.1007/s10570-017-1247-4 · Cited by 19 · see citing works

Heterologous expression and biochemical studies of a thermostable glucose tolerant β-glucosidase from Methylococcus capsulatus ( bath strain )

Sathe, S. S., Soni, S., Ranvir, V., Choudhari, V. G., Odaneth, A. A., Lali, A. M., & Chandrayan, S. K. (2017) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2017.04.078 · Cited by 19 · see citing works

Xyloglucan Oligosaccharides Hydrolysis by Exo-Acting Glycoside Hydrolases from Hyperthermophilic Microorganism Saccharolobus solfataricus

Curci, N., Strazzulli, A., Iacono, R., Lise, F. D., Maurelli, L., Fenza, M. D., Cobucci‐Ponzano, B., & Moracci, M. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22073325 · Cited by 18 · see citing works

Metabolic Engineering of Fungal Strains for Efficient Production of Cellulolytic Enzymes

Zhao, X., Zhang, X., Zhang, F., Zhang, R. Q., Jiang, B., & Bai, F. (2018) · Springer eBooks · doi:10.1007/978-981-13-0749-2_2 · Cited by 18 · see citing works

Expression of feruloyl esterase A from Aspergillus terreus and its application in biomass degradation

Zhang, S., Wang, L., Liu, Y., Zhai, H.-C., Cai, J.-P., & Hu, Y. (2015) · Protein Expression and Purification · doi:10.1016/j.pep.2015.08.015 · Cited by 17 · see citing works

Improvement of Lignocellulolytic Enzyme Production Mediated by Calcium Signaling in Bacillus subtilis Z2 under Graphene Oxide Stress

Liu, S., Gao, Y., Quan, L., Yang, M., Wang, Y., & Hou, C. (2022) · Applied and Environmental Microbiology · doi:10.1128/aem.00960-22 · Cited by 15 · see citing works

Degradation of agricultural waste is dependent on chemical fertilizers in long-term paddy-dry rotation field

Nabi, F., Chen, H., Sajid, S., Yang, G., Kyung, Y., Shah, S. M. M., Wang, X., & Hu, Y. (2024) · Journal of Environmental Management · doi:10.1016/j.jenvman.2024.120460 · Cited by 14 · see citing works

Second-Generation Biofuels: Concepts, Applications, and Challenges

Gautam, A., Pant, M., Pant, G., & Kumar, G. (2024) · Springer eBooks · doi:10.1007/978-981-97-0676-1_16 · Cited by 13 · see citing works

GlSwi6 Positively Regulates Cellulase and Xylanase Activities through Intracellular Ca2+ Signaling in Ganoderma lucidum

Lian, L., Shi, L., Zhu, J. K., Liu, R., Shi, L., Ren, A., Yu, H., & Zhao, M. (2022) · Journal of Fungi · doi:10.3390/jof8020187 · Cited by 12 · see citing works

Bioenergy Conversion Potential of Decaying Hardwoods

Dupuis, E. V., Thiffault, É., Barrette, J., Adjallé, K., & Martineau, C. (2020) · Energies · doi:10.3390/en14010093 · Cited by 12 · see citing works

Molecular and biochemical characterization of recombinant cel12B, cel8C, and peh28 overexpressed in Escherichia coli and their potential in biofuel production

Ibrahim, E. K., Jones, K. D., Taylor, K. E., Hosseney, E. N., Mills, P. L., & Escudero, J. M. (2017) · Biotechnology for Biofuels · doi:10.1186/s13068-017-0732-1 · Cited by 12 · see citing works

Independent metabolism of oligosaccharides is the keystone of synchronous utilization of cellulose and hemicellulose in Myceliophthora

Liu, J., Chen, M., Gu, S., Fan, R., Zhao, Z., Sun, W., Yao, Y., Li, J., & Tian, C. (2024) · PNAS Nexus · doi:10.1093/pnasnexus/pgae053 · Cited by 11 · see citing works

Mitochondria thioredoxin's backup role in oxidative stress resistance in Trichoderma reesei

Wang, G., Wang, H., Xiong, X., Chen, S., & Zhang, D. (2015) · Microbiological Research · doi:10.1016/j.micres.2015.01.005 · Cited by 11 · see citing works

Expression and characterization of a cellobiohydrolase (CBH7B) from the thermophilic fungus Thielavia terrestris in Pichia pastoris

Woon, J. S.-K., Mackeen, M. M., Mahadi, N. M., Illias, R. M., Murad, A. M. A., & Bakar, F. D. A. (2015) · Biotechnology and Applied Biochemistry · doi:10.1002/bab.1431 · Cited by 11 · see citing works

Cloning, expression and characterization of C. crescentus xynA2 gene and application of Xylanase II in the deconstruction of plant biomass

Jacomini, D. L. J., Bussler, L., Corrêa, J. M., Kadowaki, M. K., Maller, A., Silva, J. L. D. C., & Simão, R. D. C. G. (2020) · Molecular Biology Reports · doi:10.1007/s11033-020-05507-2 · Cited by 11 · see citing works

Total utilization of different parts of wild cocoyam in production of sugar feedstock for bioethanol production; An integrated approach

Amadi, O. C., Onyenma, N. C., Nwagu, T. N., Nnamchi, C. I., Ndubuisi, I. A., Akachukwu, S. O., Moneke, A. N., Okolo, B. N., & Agu, R. C. (2020) · Bioresource Technology Reports · doi:10.1016/j.biteb.2020.100550 · Cited by 10 · see citing works

Protein disulfide isomerase homolog TrPDI2 contributing to cellobiohydrolase production in Trichoderma reesei

Wang, G., Lv, P., He, R., Wang, H., Wang, L., Zhang, D., & Chen, S. (2015) · Enzyme and Microbial Technology · doi:10.1016/j.enzmictec.2015.05.004 · Cited by 10 · see citing works

Efficient Constitutive Expression of Cellulolytic Enzymes in Penicillium oxalicum for Improved Efficiency of Lignocellulose Degradation

Waghmare, P. R., Waghmare, P., Gao, L., Sun, W., Qin, Y., Liu, G., & Qu, Y. (2021) · Journal of Microbiology and Biotechnology · doi:10.4014/jmb.2101.01003 · Cited by 9 · see citing works

Drafting Penicillium oxalicum calcineurin-CrzA pathway by combining the analysis of phenotype, transcriptome, and endogenous protein–protein interactions

Zhao, K., Liu, Z., Li, M., Hu, Y., Yang, L., Song, X., & Qin, Y. (2021) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2021.103652 · Cited by 9 · see citing works

Tiny bugs play big role

Yi, Y. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-818862-0.00007-8 · Cited by 8 · see citing works

Enhanced enzymatic hydrolysis of cellulose in microgels

Chang, A., Wu, Q., Xu, W., Xie, J., & Wu, W. (2015) · Chemical Communications · doi:10.1039/c5cc03543k · Cited by 8 · see citing works

Molecular Mechanism of Cellulase Production Systems in Penicillium

Rastegari, A. A. (2017) · Elsevier eBooks · doi:10.1016/b978-0-444-63501-3.00008-9 · Cited by 8 · see citing works

Valorization of orange peels exploiting fungal solid‐state and lacto‐fermentation

Ricci, A., Díaz, A. B., Lazzi, C., & Blandino, A. (2023) · Journal of the Science of Food and Agriculture · doi:10.1002/jsfa.12537 · Cited by 8 · see citing works

An ethanolamine kinase Eki1 affects radial growth and cell wall integrity inTrichoderma reesei

He, R., Guo, W., & Zhang, D. (2015) · FEMS Microbiology Letters · doi:10.1093/femsle/fnv133 · Cited by 7 · see citing works

The Model Filamentous Fungus Neurospora crassa: Progress Toward a Systems Understanding of Plant Cell Wall Deconstruction

Chen, S., Xiong, B., Wei, L., Wang, Y., Yang, Y. L., Liu, Y., Zhang, D., Guo, S., Liu, Q., Fang, H., et al. (2018) · Springer eBooks · doi:10.1007/978-981-13-0749-2_6 · Cited by 7 · see citing works

How ligninolytic enzymes can help in the degradation of biomass polysaccharides, cleavage, and catalytic mechanisms?

Schneider, W. D. H., Camassola, M., & Fontana, R. C. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-99986-1.00007-7 · Cited by 5 · see citing works

In Situ Corn Fiber Conversion for Ethanol Improvement by the Addition of a Novel Lignocellulolytic Enzyme Cocktail

Gao, L., Chen, S., & Zhang, D. (2022) · Journal of Fungi · doi:10.3390/jof8030221 · Cited by 5 · see citing works

Nanotechnology Applied for Cellulase Improvements

Molina, G., Borin, G., Pelissari, F. M., & Contesini, F. J. (2018) · Biofuel and biorefinery technologies · doi:10.1007/978-3-319-75052-1_7 · Cited by 5 · see citing works

A β-glucosidase Hyperproducing Strain, Pencillium piceum: Novel Characterization of Lignocellulolytic Enzyme Systems and Its Application in Biomass Bioconversion

Gao, L., He, R., Zong, Z., & Zhang, D. (2018) · Springer eBooks · doi:10.1007/978-981-13-0749-2_5 · Cited by 5 · see citing works

Recent advances in bioethanol production from rice straw and husks by physical, chemical, and biological pretreatment methods

Ningthoujam, R., Jangid, P., Yadav, V. K., Zairov, R., Hasnain, S. M. M., Annu, Patel, A., & Dhingra, H. K. (2026) · Results in Engineering · doi:10.1016/j.rineng.2026.109162 · Cited by 4 · see citing works

Personalized Targeted Prevention and Therapy Relied on Detection of Global and Local Single Nucleotide Polymorphisms

Li, Y. (2015) · International Journal of Hematology and Therapy · doi:10.15436/2381-1404.15.001 · Cited by 4 · see citing works

Synergistic effects of enzyme-microbe co-fermentation on the nutritional quality and digestibility of corn stalks

Wei, J., Sun, M., Wang, C., Wang, Q., Huang, Y., Ma, W., & Wang, Y. U. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1721614 · Cited by 3 · see citing works

Aspergillus flavus Degraded Brewer Dried Grains for Broiler Chicken Diet: Performance and Nutrient Digestibility Parameters

Lawal, T. E., Ademola, S. G., Owoseni, A. A., Atobatele, O. E., & Asuelimen, P. (2016) · Journal of Advances in Biology & Biotechnology · doi:10.9734/jabb/2017/28681 · Cited by 3 · see citing works

Bioprocessing of hemp hurd (Cannabis sativa) for biofuel production

Abraham, R. E. (2014) · Cited by 3 · see citing works

Optimizing enzymatic oil extraction: critical roles of enzyme selection, process parameters, and synergistic effects on yield and quality

Lin, X., Ma, Z., Liu, F., Li, Y., & Zheng, H. (2025) · Food Chemistry · doi:10.1016/j.foodchem.2025.146347 · Cited by 2 · see citing works

Enzymes in Fuel Biotechnology

Shawky, B. T., Talaat, N. B., & Mohapatra, S. (2021) · Springer eBooks · doi:10.1007/978-981-33-4195-1_10 · Cited by 2 · see citing works

Molecular Characterization of Nanoimmobilized Cellulase in Facilitating Pretreatment of Lignocellulosic Biomass

Abraham, R. E., Barrow, C. J., & Puri, M. (2016) · Elsevier eBooks · doi:10.1016/b978-0-444-63507-5.00012-5 · Cited by 2 · see citing works

Identification of Key Components for the Optimization of Cellulase Mixtures Using a Proteomic Strategy

Qu, J., Zhu, J., Liu, G., & Qu, Y. (2018) · Methods in molecular biology · doi:10.1007/978-1-4939-7877-9_9 · Cited by 2 · see citing works

Development of Highly Efficient, Low-Cost Lignocellulolytic Enzyme Systems in a Penicillium: From Strain Screening to Systems Biology

Qin, Y., Liu, G., Li, Z., & Qu, Y. (2018) · Springer eBooks · doi:10.1007/978-981-13-0749-2_4 · Cited by 2 · see citing works

Systems biology of carbohydrate active enzyme production in Trichoderma reesei

Bischof, R. H., & Seiboth, B. (2015) · doi:10.4155/fseb2013.14.166 · Cited by 2 · see citing works

TrLys9 participates in fungal development and lysine biosynthesis in Trichoderma reesei

Lan, J., Zhang, L., Gao, J., & He, R. (2023) · The Journal of General and Applied Microbiology · doi:10.2323/jgam.2023.01.002 · Cited by 1 · see citing works

Development and in silico evaluation of an expression platform based on E.coli for the production of a recombinant beta-glucosidase.

Ferreira, R. G. (2019) · doi:10.11606/t.3.2019.tde-29052019-135103 · Cited by 1 · see citing works

Modification and Expression of Beta-1,4-Endoglucanase encoding sequences of fungal origin in Escherichia coli BL21.

Calle, N. G., Franco, G. M. R., & Vanegas, N. F. G. (2020) · Revista Colombiana de Biotecnología · doi:10.15446/rev.colomb.biote.v22n2.79448

General backgrounds

Bajpai, P. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-21492-9.00001-x

Additional file 3 of Tailoring the expression of Xyr1 leads to efficient production of lignocellulolytic enzymes in Trichoderma reesei for improved saccharification of corncob residues

Shen, L., Yan, A., Wang, Y., Wang, Y., Liu, H., & Zhong, Y. (2023) · Figshare · doi:10.6084/m9.figshare.22601546

Additional file 1 of Tailoring the expression of Xyr1 leads to efficient production of lignocellulolytic enzymes in Trichoderma reesei for improved saccharification of corncob residues

Shen, L., Yan, A., Wang, Y., Wang, Y., Liu, H., & Zhong, Y. (2023) · Figshare · doi:10.6084/m9.figshare.22601540

Additional file 2 of Tailoring the expression of Xyr1 leads to efficient production of lignocellulolytic enzymes in Trichoderma reesei for improved saccharification of corncob residues

Shen, L., Yan, A., Wang, Y., Wang, Y., Liu, H., & Yaohua, Z. (2023) · Figshare · doi:10.6084/m9.figshare.22601543

Advances in Feedstock Transport and Logistic Supply Chain Development for Lignocellulosic Bioethanol Production

Gupta, V. C., Singh, A., Prashant, N., & Zafar, M. (2026) · Clean Energy Production Technologies · doi:10.1007/978-981-95-9690-4_3

Advances in fungal enzyme cocktails for lignocellulosic biomass deconstruction and second-generation ethanol production

Contato, A. G., & Conte-Junior, C. A. (2026) · Bioresource Technology Reports · doi:10.1016/j.biteb.2026.103026

Engineering of filamentous fungi for efficient conversion of lignocellulose: Tools, recent advances and prospects

Liu, G., & Qu, Y. (2018) · Biotechnology Advances · doi:10.1016/j.biotechadv.2018.12.004 · Cited by 133 · see citing works

Fungal systems for lignocellulose deconstruction: From enzymatic mechanisms to hydrolysis optimization

Ren, F., Wu, F., Wu, X., Bao, T., Jie, Y., & Gao, L. (2024) · GCB Bioenergy · doi:10.1111/gcbb.13130 · Cited by 66 · see citing works

Development of Highly Efficient, Low-Cost Lignocellulolytic Enzyme Systems in a Penicillium: From Strain Screening to Systems Biology

Qin, Y., Liu, G., Li, Z., & Qu, Y. (2018) · Springer eBooks · doi:10.1007/978-981-13-0749-2_4 · Cited by 2 · see citing works

Advancement in lignocellulolytic enzyme production: tailored strategies to overcome challenges in biomass hydrolysis

Raheja, Y., Gaur, P., Islam, T., Chaurasia, A. K., Gaur, V. K., & Chadha, B. S. (2025) · Systems Microbiology and Biomanufacturing · doi:10.1007/s43393-025-00342-7 · Cited by 23 · see citing works

Integrated engineering of enzymes and microorganisms for improving the efficiency of industrial lignocellulose deconstruction

Liu, G., & Qu, Y. (2021) · Engineering Microbiology · doi:10.1016/j.engmic.2021.100005 · Cited by 67 · see citing works