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Lipid Geometry and Bilayer Curvature Modulate LC3/GABARAP-Mediated Model Autophagosomal Elongation

Landajuela, Ane, Hervás, Javier H., Antón, Zuriñe, Montes, L. Ruth, Gil, David, Valle, Mikel, Rodriguez, J. Francisco, Goñi, Felix M., Alonso, Alicia·2016·Biophysical Journal

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Research works printed but not linked: 58

  1. Mizushima, 2011, Autophagy: renovation of cells and tissues, Cell, 147, 728, 10.1016/j.cell.2011.10.026 · DOI
  2. Choi, 2013, Autophagy in human health and disease, N. Engl. J. Med., 368, 651, 10.1056/NEJMra1205406 · DOI · Paper page
  3. Shibutani, 2014, A current perspective of autophagosome biogenesis, Cell Res., 24, 58, 10.1038/cr.2013.159 · DOI
  4. Hamasaki, 2013, Up-to-date membrane biogenesis in the autophagosome formation, Curr. Opin. Cell Biol., 25, 455, 10.1016/j.ceb.2013.03.004 · DOI
  5. Rubinsztein, 2012, Mechanisms of autophagosome biogenesis, Curr. Biol., 22, R29, 10.1016/j.cub.2011.11.034 · DOI
  6. Homma, 2011, The Autophagy Database: an all-inclusive information resource on autophagy that provides nourishment for research, Nucleic Acids Res., 39, D986, 10.1093/nar/gkq995 · DOI
  7. Xie, 2007, Autophagosome formation: core machinery and adaptations, Nat. Cell Biol., 9, 1102, 10.1038/ncb1007-1102 · DOI
  8. Suzuki, 2001, The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation, EMBO J., 20, 5971, 10.1093/emboj/20.21.5971 · DOI
  9. Ichimura, 2000, A ubiquitin-like system mediates protein lipidation, Nature, 408, 488, 10.1038/35044114 · DOI
  10. Xie, 2008, Atg8 controls phagophore expansion during autophagosome formation, Mol. Biol. Cell, 19, 3290, 10.1091/mbc.e07-12-1292 · DOI · Paper page
  11. Yang, 2010, Mammalian autophagy: core molecular machinery and signaling regulation, Curr. Opin. Cell Biol., 22, 124, 10.1016/j.ceb.2009.11.014 · DOI · Paper page
  12. Kouno, 2005, Solution structure of microtubule-associated protein light chain 3 and identification of its functional subdomains, J. Biol. Chem., 280, 24610, 10.1074/jbc.M413565200 · DOI
  13. Coyle, 2002, Structure of GABARAP in two conformations: implications for GABA(A) receptor localization and tubulin binding, Neuron, 33, 63, 10.1016/S0896-6273(01)00558-X · DOI
  14. Kabeya, 2000, LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing, EMBO J., 19, 5720, 10.1093/emboj/19.21.5720 · DOI · Paper page
  15. Tanida, 2002, Human Apg3p/Aut1p homologue is an authentic E2 enzyme for multiple substrates, GATE-16, GABARAP, and MAP-LC3, and facilitates the conjugation of hApg12p to hApg5p, J. Biol. Chem., 277, 13739, 10.1074/jbc.M200385200 · DOI
  16. Sou, 2008, The Atg8 conjugation system is indispensable for proper development of autophagic isolation membranes in mice, Mol. Biol. Cell, 19, 4762, 10.1091/mbc.e08-03-0309 · DOI
  17. Weidberg, 2010, LC3 and GATE-16/GABARAP subfamilies are both essential yet act differently in autophagosome biogenesis, EMBO J., 29, 1792, 10.1038/emboj.2010.74 · DOI · Paper page
  18. Nakatogawa, 2007, Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion, Cell, 130, 165, 10.1016/j.cell.2007.05.021 · DOI
  19. Weidberg, 2011, LC3 and GATE-16 N termini mediate membrane fusion processes required for autophagosome biogenesis, Dev. Cell., 20, 444, 10.1016/j.devcel.2011.02.006 · DOI
  20. Nair, 2011, SNARE proteins are required for macroautophagy, Cell, 146, 290, 10.1016/j.cell.2011.06.022 · DOI
  21. Noda, 2010, Regulation of membrane biogenesis in autophagy via PI3P dynamics, Semin. Cell Dev. Biol., 21, 671, 10.1016/j.semcdb.2010.04.002 · DOI
  22. Dooley, 2014, WIPI2 links LC3 conjugation with PI3P, autophagosome formation, and pathogen clearance by recruiting Atg12-5-16L1, Mol. Cell, 55, 238, 10.1016/j.molcel.2014.05.021 · DOI
  23. Dall’Armi, 2013, The role of lipids in the control of autophagy, Curr. Biol., 23, R33, 10.1016/j.cub.2012.10.041 · DOI
  24. Vicinanza, 2015, PI(5)P regulates autophagosome biogenesis, Mol. Cell, 57, 219, 10.1016/j.molcel.2014.12.007 · DOI
  25. Zens, 2015, In vitro systems for Atg8 lipidation, Methods, 75, 37, 10.1016/j.ymeth.2014.11.004 · DOI
  26. Mayer, 1986, Vesicles of variable sizes produced by a rapid extrusion procedure, Biochim. Biophys. Acta, 858, 161, 10.1016/0005-2736(86)90302-0 · DOI
  27. Fiske, 1925, The colorimetric determination of phosphorus, J. Biol. Chem., 66, 375, 10.1016/S0021-9258(18)84756-1 · DOI
  28. Struck, 1981, Use of resonance energy transfer to monitor membrane fusion, Biochemistry, 20, 4093, 10.1021/bi00517a023 · DOI
  29. Xu, 2005, Hemifusion in SNARE-mediated membrane fusion, Nat. Struct. Mol. Biol., 12, 417, 10.1038/nsmb921 · DOI
  30. Ellens, 1985, H+- and Ca2+-induced fusion and destabilization of liposomes, Biochemistry, 24, 3099, 10.1021/bi00334a005 · DOI
  31. Goñi, 2003, Interaction of phospholipases C and sphingomyelinase with liposomes, Methods Enzymol., 372, 3, 10.1016/S0076-6879(03)72001-1 · DOI
  32. Ichimura, 2004, In vivo and in vitro reconstitution of Atg8 conjugation essential for autophagy, J. Bio. Chem., 279, 40584, 10.1074/jbc.M405860200 · DOI · Paper page
  33. Nakatogawa, 2012, SDS-PAGE techniques to study ubiquitin-like conjugation systems in yeast autophagy, Methods Mol. Biol., 832, 519, 10.1007/978-1-61779-474-2_37 · DOI
  34. Nath, 2014, Lipidation of the LC3/GABARAP family of autophagy proteins relies on a membrane-curvature-sensing domain in Atg3, Nat. Cell Biol., 16, 415, 10.1038/ncb2940 · DOI
  35. Chernomordik, 2008, Mechanics of membrane fusion, Nat. Struct. Mol. Biol., 15, 675, 10.1038/nsmb.1455 · DOI · Paper page
  36. Basáñez, 1996, Origin of the lag period in the phospholipase C cleavage of phospholipids in membranes. Concomitant vesicle aggregation and enzyme activation, Biochemistry, 35, 15183, 10.1021/bi9616561 · DOI
  37. Villar, 2001, Diacylglycerol effects on phosphatidylinositol-specific phospholipase C activity and vesicle fusion, FEBS Lett., 494, 117, 10.1016/S0014-5793(01)02333-X · DOI
  38. Ibarguren, 2010, End-products diacylglycerol and ceramide modulate membrane fusion induced by a phospholipase C/sphingomyelinase from Pseudomonas aeruginosa, Biochim. Biophys. Acta, 1798, 59, 10.1016/j.bbamem.2009.10.017 · DOI
  39. Goñi, 2000, Membrane fusion induced by phospholipase C and sphingomyelinases, Biosci. Rep., 20, 443, 10.1023/A:1010450702670 · DOI
  40. Basáñez, 1998, Effect of single chain lipids on phospholipase C-promoted vesicle fusion. A test for the stalk hypothesis of membrane fusion, Biochemistry, 37, 3901, 10.1021/bi9728497 · DOI
  41. Basanez, 1996, Diacylglycerol and the promotion of lamellar-hexagonal and lamellar-isotropic phase transitions in lipids: implications for membrane fusion, Biophys. J., 70, 2299, 10.1016/S0006-3495(96)79795-3 · DOI
  42. Chernomordik, 1995, The hemifusion intermediate and its conversion to complete fusion: regulation by membrane composition, Biophys. J., 69, 922, 10.1016/S0006-3495(95)79966-0 · DOI
  43. Ahyayauch, 2005, Modulation of PI-specific phospholipase C by membrane curvature and molecular order, Biochemistry, 44, 11592, 10.1021/bi050715k · DOI
  44. de Arcuri, 1999, Protein-induced fusion of phospholipid vesicles of heterogeneous sizes, Biochem. Biophys. Res. Commun., 262, 586, 10.1006/bbrc.1999.1243 · DOI
  45. Knorr, 2014, Membrane morphology is actively transformed by covalent binding of the protein Atg8 to PE-lipids, PLoS One, 9, e115357, 10.1371/journal.pone.0115357 · DOI
  46. Antonny, 2011, Mechanisms of membrane curvature sensing, Annu. Rev. Biochem., 80, 101, 10.1146/annurev-biochem-052809-155121 · DOI
  47. Tanida, 2004, LC3 conjugation system in mammalian autophagy, Int. J. Biochem. Cell Biol., 36, 2503, 10.1016/j.biocel.2004.05.009 · DOI
  48. Tanida, 2002, Mammalian Apg12p, but not the Apg12p.Apg5p conjugate, facilitates LC3 processing, Biochem. Biophys. Res. Commun., 296, 1164, 10.1016/S0006-291X(02)02057-0 · DOI
  49. Mizushima, 2003, Role of the Apg12 conjugation system in mammalian autophagy, Int. J. Biochem. Cell Biol., 35, 553, 10.1016/S1357-2725(02)00343-6 · DOI
  50. Moreau, 2011, Autophagosome precursor maturation requires homotypic fusion, Cell, 146, 303, 10.1016/j.cell.2011.06.023 · DOI
  51. Xu, 2011, A lipid-anchored SNARE supports membrane fusion, Proc. Natl. Acad. Sci. USA, 108, 17325, 10.1073/pnas.1113888108 · DOI
  52. Langosch, 2007, The role of transmembrane domains in membrane fusion, Cell. Mol. Life Sci., 64, 850, 10.1007/s00018-007-6439-x · DOI
  53. Zimmerberg, 2006, How proteins produce cellular membrane curvature, Nat. Rev. Mol. Cell Biol., 7, 9, 10.1038/nrm1784 · DOI
  54. Morero, 1985, Fusion of phospholipid vesicles induced by muscle glyceraldehyde-3-phosphate dehydrogenase in the absence of calcium, Biochemistry, 24, 1904, 10.1021/bi00329a015 · DOI
  55. Dall’Armi, 2010, The phospholipase D1 pathway modulates macroautophagy, Nat. Commun., 1, 142, 10.1038/ncomms1144 · DOI
  56. Shahnazari, 2010, A diacylglycerol-dependent signaling pathway contributes to regulation of antibacterial autophagy, Cell Host Microbe, 8, 137, 10.1016/j.chom.2010.07.002 · DOI
  57. Sakoh-Nakatogawa, 2013, Atg12-Atg5 conjugate enhances E2 activity of Atg3 by rearranging its catalytic site, Nat. Struct. Mol. Biol., 20, 433, 10.1038/nsmb.2527 · DOI
  58. Ma, 2010, Preparation of a functional GABARAP-lipid conjugate in nanodiscs and its investigation by solution NMR spectroscopy, ChemBioChem, 11, 1967, 10.1002/cbic.201000354 · DOI

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Metadata

Authors
Landajuela, A., Hervás, J. H., Antón, Z., Montes, L. R., Gil, D., Valle, M., Rodriguez, J. F., Goñi, F. M., & Alonso, A.
Venue
Biophysical Journal
Publisher
Elsevier BV
Published
2016-01
Volume
110
Issue
2
Pages
411-422
ISSN
0006-3495
Cited by
69
References
5
Language
en

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