The Mammalian Epigenome

Cited by (1,004)

Items 801–900 of 1,004

1. Reprogramming of somatic cell identity.
   Jacob H. Hanna, Bryce W. Carey, Rudolf Jaenisch · 2008 · Cold Spring Harbor Symposia on Quantitative Biology
2. DNA methylation‐mediated nucleosome dynamics and oncogenic Ras signaling
   Samir Kumar Patra, Moshe Szyf · 2008 · FEBS Journal
3. Introduction to “A Handbook of Transcription Factors”
   Timothy R. Hughes · 2011 · Sub-cellular biochemistry/Subcellular biochemistry
4. Facioscapulohumeral Muscular Dystrophy As a Model for Epigenetic Regulation and Disease
   Charis L. Himeda, Takako Iida Jones, Peter L. Jones · 2014 · Antioxidants and Redox Signaling
5. A higher degree of LINE-1 methylation in peripheral blood mononuclear cells, a one-carbon nutrient related epigenetic alteration, is associated with a lower risk of developing cervical intraepithelial neoplasia
   Chandrika Jayanthi Piyathilake, Maurizio Macaluso, Ronald David Alvarez, Min Chen, Suguna Badiga, Nuzhat R. Siddiqui, Jeffrey C. Edberg, Edward E. Partridge, Gary L. Johanning · 2011 · Nutrition
6. Specification of the germ cell lineage in mice
   Mitinori Saitou · 2009 · Frontiers in bioscience
7. Epigenetic Regulation of Axon Outgrowth and Regeneration in CNS Injury: The First Steps Forward
   Ricco Lindner, Radhika Puttagunta, Simone Di Giovanni · 2013 · Neurotherapeutics
8. Epigenetic nutraceutical diets in Alzheimer's disease
   Sergio Davinelli, Vittorio Calabrese, Davide Zella, Giovanni Scapagnini · 2014 · The journal of nutrition health & aging
9. Epigenetic Mechanisms in Heart Failure Pathogenesis
   Thomas Gerard Di Salvo, Saptarsi M. Haldar · 2014 · Circulation Heart Failure
10. Regulation and function of mammalian DNA methylation patterns: a genomic perspective
    H. Wu, J. Tao, Y. E. Sun · 2012 · Briefings in Functional Genomics
11. Exploiting Long Noncoding RNAs as Pharmacological Targets to Modulate Epigenetic Diseases.
    Bindu Prabhakar, Xiao‐bo Zhong, Theodore P. Rasmussen · 2017 · PubMed Central
12. Epigenetic analysis in rheumatoid arthritis synoviocytes
    Seokjin Ham, Jae‐Bum Bae, Suman Lee, Bong‐Jo Kim, Bok‐Ghee Han, Seung‐Ki Kwok, Tae‐Young Roh · 2019 · Experimental & Molecular Medicine
13. Effects of Biological Therapies on Molecular Features of Rheumatoid Arthritis
    Chary López-Pedrera, Nuria Barbarroja, Alejandra María Patiño-Trives, M. Luque-Tévar, Eduardo Collantes‐Estévez, Alejandro Escudero‐Contreras, C. Pérez‐Sánchez · 2020 · International Journal of Molecular Sciences
14. Are the epigenetic changes predictive of therapeutic efficacy for psychiatric disorders? A translational approach towards novel drug targets
    Vincenzo Micale, Martina Di Bartolomeo, Serena Di Martino, Tibor Štark, Bernardo Maria Dell’Osso, Filippo Drago, Claudio D’Addario · 2022 · Pharmacology & Therapeutics
15. Epigenetic dynamics across the cell cycle
    Tony Bou Kheir, Anders Henrik Lund · 2010 · Essays in Biochemistry
16. Optical mapping discerns genome wide DNA methylation profiles
    Gene E. Ananiev, Steve Goldstein, Rod Runnheim, Dan Forrest, Shiguo Zhou, Konstantinos D. Potamousis, Chris P Churas, Veit Bergendahl, James Alexander Thomson, David C. Schwartz · 2008 · BMC Molecular Biology
17. New clinical and experimental approaches for studying tumor dormancy: does tumor dormancy offer a therapeutic target?
    Paul Edward Goss, Alison L. Allan, David I. Rodenhiser, Paula J. Foster, Ann F. Chambers · 2008 · Apmis
18. Endocrinology of Human Pregnancy and Fetal-Placental Neuroendocrine Development
    Sam A. Mesiano · 2019 · Elsevier eBooks
19. DNA methylation restricts spontaneous multi-lineage differentiation of mesenchymal progenitor cells, but is stable during growth factor-induced terminal differentiation
    Marlinda Hupkes, Eugene P. van Someren, Sjors Middelkamp, Ester Piek, E.J.J. van Zoelen, Koen J. Dechering · 2011 · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research
20. Distribution of DNA methylation, CpGs, and CpG islands in human isochores
    Annalisa Varriale, Giorgio Bernardi · 2009 · Genomics
21. Are Pax proteins potential therapeutic targets in kidney disease and cancer?
    Edward C Grimley, Gregory R. Dressler · 2018 · Kidney International
22. Recent advances in cold atmospheric plasma (CAP) for breast cancer therapy
    Supat Chupradit, Gunawan Widjaja, Basman Radhi Majeed, Maria Kuznetsova, Mohammad Javed Ansari, Wanich Suksatan, Abduladheem Turki Jalil, Bahar Ghazi Esfahani · 2022 · Cell Biology International
23. UHRF1 is a genome caretaker that facilitates the DNA damage response to γ-irradiation
    Helena Sumantrai Mistry, Laura Tamblyn, Hussein Butt, Daniel Sisgoreo, Aileen Gracias, Meghan Larin, Kalpana Gopalakrishnan, Manoor Prakash Hande, John Peter McPherson · 2010 · Genome Integrity
24. Mouse pluripotent stem cells at a glance
    Siim Pauklin, Roger A. Pedersen, Ludovic Vallier · 2011 · Journal of Cell Science
25. Dnmt3a1 Upregulates Transcription of Distinct Genes and Targets Chromosomal Gene Clusters for Epigenetic Silencing in Mouse Embryonic Stem Cells
    Andriana G. Kotini, Anastasia Mpakali, Theodora Agalioti · 2011 · Molecular and Cellular Biology
26. Cellular reprogramming for clinical cartilage repair
    Britta J.H. Driessen, Colin Logie, Lucienne Angela Vonk · 2017 · Cell Biology and Toxicology
27. Surveying the epigenomic landscape, one base at a time
    Gabriel E. Zentner, Steven Henikoff · 2012 · Genome biology
28. Epigenetic Mechanisms of Metabolic Memory in Diabetes
    Sundararajan Jayaraman · 2012 · Circulation Research
29. Impact of the Exposome on the Epigenome in Inflammatory Bowel Disease Patients and Animal Models
    Sophie Vieujean, Bénédicte Caron, Vincent Haghnejad, Jean‐Yves Jouzeau, Patrick Netter, Anne-Charlotte Heba, Ndeye Coumba Ndiaye, David Moulin, Guillermo Barreto, Silvio Danese et al. · 2022 · International Journal of Molecular Sciences
30. Predicting expression: the complementary power of histone modification and transcription factor binding data
    David Budden, Daniel Hurley, Joseph Cursons, John F Markham, Melissa J. Davis, Edmund J. Crampin · 2014 · Epigenetics & Chromatin
31. DNA methylation and hypertension: emerging evidence and challenges
    Liyuan Han, Yanfen Liu, Shiwei Duan, Benjamin Perry, Wen Li, Yonghan He · 2016 · Briefings in Functional Genomics
32. Genome‐wide differential DNA methylation in tropically adapted Creole cattle and their Iberian ancestors
    Natalia Sevane, Rodrigo Alfredo Martínez, Michael W. Bruford · 2018 · Animal Genetics
33. Developmental Programming: Contribution of Epigenetic Enzymes to Antral Follicular Defects in the Sheep Model of PCOS
    Xingzi Guo, Muraly Puttabyatappa, Robert C. Thompson, Vasantha Padmanabhan · 2019 · Endocrinology
34. Epigenetic regulation of adult stem cell function
    Lorenzo Rinaldi, Salvador Aznar Benitah · 2014 · FEBS Journal
35. Biological Role of Dystroglycan in Schwann Cell Function and Its Implications in Peripheral Nervous System Diseases
    Toshihiro Masaki, Kiichiro Matsumura · 2010 · BioMed Research International
36. Imaging epigenetics in Alzheimer's disease.
    S. Lista, F. Garaci, N. Toschi, H. Hampel · 2013 · Current pharmaceutical design
37. siRNA-mediated DNA methylation and H3K9 dimethylation in plants
    Chi Xu, Jing Tian, Beixin Mo · 2013 · Protein & Cell
38. Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data
    Yun Chen, Mette Jørgensen, Raivo Kolde, Xiaobei Zhao, Brian John Parker, Eivind Valen, Jiayu Wen, Albin Sandelin · 2011 · BMC Genomics
39. Genome-wide promoter analysis of histone modifications in human monocyte-derived antigen presenting cells
    Liina Tserel, Raivo Kolde, Ana Rebane, Kai E. Kisand, Tõnis Org, Hedi Peterson, Jaak Vilo, Pärt Peterson · 2010 · BMC Genomics
40. Dysregulation of genome-wide gene expression and DNA methylation in abnormal cloned piglets
    Guanglei Li, Qitao Jia, Jianguo Zhao, Xinyun Li, Mei Yu, Melissa Samuel, Shuhong Zhao, Randall S. Prather, Changchun Li · 2014 · BMC Genomics
41. Cohesin is required for expression of the estrogen receptor-alpha (ESR1) gene
    Tanja Prenzel, Frank Krämer, Upasana Bedi, Sankari Nagarajan, Tim Beißbarth, Steven A. Johnsen · 2012 · Epigenetics & Chromatin
42. Epigenetics
    Jennifer A. McCaughan, Amy Jayne McKnight, Aisling E. Courtney, Alexander Peter Maxwell · 2012 · Transplantation
43. Quantitative integration of epigenomic variation and transcription factor binding using MAmotif toolkit identifies an important role of IRF2 as transcription activator at gene promoters
    Hongduo Sun, Jiawei Wang, Zhaohui Gong, Jiaying Yao, Yuangao Wang, Jian Xu, Guo‐Cheng Yuan, Yijing Zhang, Zhen Shao · 2018 · Cell Discovery
44. Epigenetic Effects of Cadmium in Cancer: Focus on Melanoma
    Mario Venza, Maria Visalli, Carmelo Biondo, Rosaria Oteri, Federica Agliano, Silvia Morabito, Gerardo Caruso, Maria Caffo, Diana Venza Teti, Isabella Venza · 2015 · Current Genomics
45. Fast genomic μChIP-chip from 1,000 cells
    John Arne Dahl, Andrew H. Reiner, Philippe Collas · 2009 · Genome biology
46. Epigenetics: tools and technologies
    William P. Janzen, Tim J. Wigle, Jian Jun Jin, Stephen V. Frye · 2010 · Drug Discovery Today Technologies
47. Alcohol Withdrawal and Cerebellar Mitochondria
    Marianna E. Jung · 2014 · The Cerebellum
48. Current research progresses on calf rearing and nutrition in China
    Qiyu Diao, Rong Zhang, Yan Tu · 2017 · Journal of Integrative Agriculture
49. Learning the Formation Mechanism of Domain-Level Chromatin States with Epigenomics Data
    Wen Jun Xie, Bin Zhang · 2019 · Biophysical Journal
50. Discovery of a Potent and Selective Fragment-like Inhibitor of Methyllysine Reader Protein Spindlin 1 (SPIN1)
    Yan Xiong, Holger Greschik, C. Johansson, Ludwig Seifert, Johannes Bacher, Kwang‐Su Park, Nicolas Babault, Michael L. Martini, Vincent Fagan, Fengling Li et al. · 2019 · Journal of Medicinal Chemistry
51. The Association between Genomic DNA Methylation and Diabetic Peripheral Neuropathy in Patients with Type 2 Diabetes Mellitus
    Honghong Zhang, Xingfa Han, Mengmeng Wang, Qingfang Hu, Sicheng Li, Meng Wang, Ji Hu · 2019 · Journal of Diabetes Research
52. Comprehensive analysis of regulation of DNA methyltransferase isoforms in human breast tumors
    Mangala Hegde, Manjunath Bandu Joshi · 2021 · Journal of Cancer Research and Clinical Oncology
53. Chromatin epigenetics and nuclear lamina keep the nucleus in shape: Examples from natural and accelerated aging
    Pietro Salvatore Carollo, Viviana Barra · 2022 · Biology of the Cell
54. Epigenetic tools in potential anticancer therapy
    Katarina Sebova, Ivana Fridrichová · 2010 · Anti-Cancer Drugs
55. REST: Transcriptional and Epigenetic Regulator
    Angela Bithell · 2011 · Epigenomics
56. Targeting Chromatin Remodeling to Prevent Cardiovascular Disease in Diabetes
    Sarah Costantino, Francesco Paneni, Francesco Cosentino · 2015 · Current Pharmaceutical Biotechnology
57. ThPOK represses CXXC5, which induces methylation of histone H3 lysine 9 in Cd40lg promoter by association with SUV39H1: implications in repression of CD40L expression in CD8+ cytotoxic T cells
    Yukako Tsuchiya, Taku Naito, Mari Tenno, Mitsuo Maruyama, Haruhiko Koseki, Ichiro Taniuchi, Yoshinori Naoe · 2016 · Journal of Leukocyte Biology
58. Charting the dynamic epigenome during B-cell development
    José Ignacio Martín-Subero, Christopher C. Oakes · 2017 · Seminars in Cancer Biology
59. Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification
    Bo Wen, Hao Wu, Hans Tomas Bjornsson, R. D. Green, Rafael A. Irizarry, Andrew P. Feinberg · 2008 · Genome Research
60. Antiepileptic drugs in patients with malignant brain tumor: beyond seizures and pharmacokinetics
    Holly A. Gefroh-Grimes, Barry E. Gidal · 2015 · Acta Neurologica Scandinavica
61. Dark Matters in AMD Genetics: Epigenetics and Stochasticity
    Leonard M. Hjelmeland · 2011 · Investigative Ophthalmology & Visual Science
62. Epigenetics, embryo quality and developmental potential
    Nathalie Beaujean · 2014 · Reproduction Fertility and Development
63. Dynamic changes of histone H3 trimethylated at positions K4 and K27 in human oocytes and preimplantation embryos
    Aijun Zhang, Bufang Xu, Yijuan Sun, Xiaowei Lu, Ruihuan Gu, Ling Wu, Yun Feng, Chen Xu · 2012 · Fertility and Sterility
64. Alterations in Histone H4 Lysine 20 Methylation: Implications for Cancer Detection and Prevention
    Igor Koturbash, Natalie E. Simpson, Frederick A. Beland, Igor P. Pogribny · 2011 · Antioxidants and Redox Signaling
65. The prospect of induced pluripotent stem cells for diabetes mellitus treatment
    A. Soejitno, P. Prayudi · 2011 · Therapeutic Advances in Endocrinology and Metabolism
66. Writing and Rewriting the Epigenetic Code of Cancer Cells: From Engineered Proteins to Small Molecules
    Pilar Blancafort, Jian Jun Jin, Stephen V. Frye · 2012 · Molecular Pharmacology
67. Next Generation Genome Sequencing
    Michael Janitz · 2008 · Wiley eBooks
68. Epigenetic Regulations in Neural Stem Cells and Neurological Diseases
    Hang Zhou, Bin Wang, Hao Sun, Xingshun Xu, Yongxiang Wang · 2018 · Stem Cells International
69. Molecular Mechanisms of Vascular Damage During Lung Injury
    Ramon Bossardi Ramos, Alejandro Pablo Adam · 2021 · Advances in experimental medicine and biology
70. Fascinating Transformation of SAM-Competitive Protein Methyltransferase Inhibitors from Nucleoside Analogues to Non-Nucleoside Analogues
    Arindam Talukdar, Ayan Mukherjee, Debomita Bhattacharya · 2022 · Journal of Medicinal Chemistry
71. The interaction of modified histones with the bromodomain testis-specific ( BRDT ) gene and its mRNA level in sperm of fertile donors and subfertile men
    Cornelia Steilmann, M. C. O. Cavalcanti, Marek Bartkuhn, Jörn Pons‐Kühnemann, Hans-Christian Schuppe, W. Weidner, Klaus Steger, Agnieszka Paradowska · 2010 · Reproduction
72. Role of Epigenetic Mechanisms in the Vascular Complications of Diabetes
    Marpadga A. Reddy, Rama D Natarajan · 2012 · Sub-cellular biochemistry/Subcellular biochemistry
73. Designing DNA interstrand lock for locus-specific methylation detection in a nanopore
    Insoon Kang, Yong Wang, Corbin Reagan, Yumei Fu, Michael Wang, Li‐Qun Gu · 2013 · Scientific Reports
74. Nuclear architecture as an epigenetic regulator of neural development and function
    J M Alexander, Stavros Lomvardas · 2014 · Neuroscience
75. The interactomes of POU5F1 and SOX2 enhancers in human embryonic stem cells
    Fan Gao, Zong Wei, Woojin An, Kai Wang, Wange Lu · 2013 · Scientific Reports
76. The Real Culprit in Systemic Lupus Erythematosus: Abnormal Epigenetic Regulation
    Haijing Wu, Ming Zhao, Christopher Chia-Chi Chang, Qianjin Lu · 2015 · International Journal of Molecular Sciences
77. Loss ofMEN1activates DNMT1 implicating DNA hypermethylation as a driver of MEN1 tumorigenesis
    Ziqiang Yuan, Carmen Sánchez Claros, Masako Suzuki, Elaine C. Maggi, Justin D. Kaner, Noah S. Kinstlinger, Jolanta Gorecka, Thomas J. Quinn, Rula C. Geha, Amanda Corn et al. · 2016 · Oncotarget
78. The Role of Epigenetics in Type 1 Diabetes.
    Zhi-Guo Xie, Christopher Chang, Gan Huang, Zhi-Guang Zhou · 2020 · Advances in Experimental Medicine and Biology
79. Multiplexed single-cell profiling of chromatin states at genomic loci by expansion microscopy
    Marcus A. Woodworth, Kenneth K.H. Ng, Aaron R. Halpern, Nicholas A. Pease, Phuc Hong Nguyen, Hao Yuan Kueh, Joshua C. Vaughan · 2021 · Nucleic Acids Research
80. Emerging concepts on the epigenetic and transcriptional regulation of the Kiss1 gene
    Sheila J. Semaan, Alexander S. Kauffman · 2013 · International Journal of Developmental Neuroscience
81. Transcriptional and epigenetic networks in haematological malignancy
    Ngai Cheung, Chi Wai Eric So · 2011 · FEBS Letters
82. Defining the chromatin signature of inducible genes in T cells
    Pek Siew Lim, Kristine Hardy, Karen L. Bunting, Lina Ma, Kaiman Peng, Xinxin Chen, Mary Shannon · 2009 · Genome biology
83. Human pluripotent stem cell models of Fragile X syndrome
    Anita Bhattacharyya, Xinyu Zhao · 2015 · Molecular and Cellular Neuroscience
84. Integrating epigenomics into pharmacogenomic studies
    Wei Zhang, Dolan, Huang · 2008 · Pharmacogenomics and Personalized Medicine
85. Pure enantiomers of benzoylamino-tranylcypromine: LSD1 inhibition, gene modulation in human leukemia cells and effects on clonogenic potential of murine promyelocytic blasts
    Sérgio Valente, Verónica Rodríguez, Ciro Mercurio, Paola Vianello, Bruna Saponara, Roberto Cirilli, Giuseppe Ciossani, Donatella Labella, Biagina Marrocco, Daria Monaldi et al. · 2015 · European Journal of Medicinal Chemistry
86. Decomposition of RNA methylome reveals co-methylation patterns induced by latent enzymatic regulators of the epitranscriptome
    Lian Liu, Shao‐Wu Zhang, Yu-Chen Zhang, Hui Liu, Lin Zhang, Runsheng Chen, Yufei Huang, Jia Meng · 2014 · Molecular BioSystems
87. Structural organization of human replication timing domains
    Rasha E. Boulos, Guénola Drillon, Françoise Argoul, A. Arnéodo, Benjamin Audit · 2015 · FEBS Letters
88. Effect of Body Mass Index on Global DNA Methylation in Healthy Korean Women
    Yeon Kyung Na, Hae Sook Hong, Duk Hee Lee, Won Kee Lee, Dong Sun Kim · 2014 · Molecules and Cells
89. Linking the Epigenome to the Genome: Correlation of Different Features to DNA Methylation of CpG Islands
    Clemens Wrzodek, Finja Büchel, Georg Hinselmann, Johannes Eichner, Florian Mittag, Andreas Zell · 2012 · PLoS ONE
90. Chromatin Modifications Associated With Diabetes and Obesity
    Dustin E. Schones, Amy Leung, Rama D Natarajan · 2015 · Arteriosclerosis Thrombosis and Vascular Biology
91. Understanding the Complexity of Epigenetic Target Space
    Vineet Pande · 2016 · Journal of Medicinal Chemistry
92. Early epigenetic reprogramming in fertilized, cloned, and parthenogenetic embryos
    Lessly P. Sepulveda-Rincon, Edgar Del Llano, Elisa Serrano-Revuelta, Lydia Ruddick, Walid E. Maalouf, Nathalie Beaujean · 2016 · Theriogenology
93. Dynamic Chromatin Modifications Control GnRH Gene Expression during Neuronal Differentiation and Protein Kinase C Signal Transduction
    Anita K. Iyer, Melissa J. Brayman, Pamela L. Mellon · 2011 · Molecular Endocrinology
94. DNA methylation alterations in the pathogenesis of lupus
    S H Chen, Qiao‐Li Lv, Liang Hu, Mou Peng, G H Wang, B Q Sun · 2016 · Clinical & Experimental Immunology
95. Epigenetic regulation of neural stem cell differentiation towards spinal cord regeneration
    Tomonori Kameda, Takuya Imamura, Kinichi Nakashima · 2017 · Cell and Tissue Research
96. Halophytes and other molecular strategies for the generation of salt-tolerant crops
    Nicolle Louise Ferreira Barros, Deyvid Novaes Marques, Lorene Bianca Araújo Tadaiesky, Cláudia Regina Batista de Souza · 2021 · Plant Physiology and Biochemistry
97. Maintenance of a functional higher order chromatin structure: The role of the nuclear matrix in normal and disease states.
    Amelia K. Linnemann, Stephen A. Krawetz · 2009 · PubMed
98. Cell reprogramming gets direct
    Cory R. Nicholas, Arnold R. Kriegstein · 2010 · Nature
99. Can the battle against tuberculosis gain from epigenetic research?
    Maria M. Esterhuyse, Heinz Linhart, Stefan H. E. Kaufmann · 2012 · Trends in Microbiology
100. Nitrogen dioxide inhalation induces genotoxicity in rats
     Ming Han, Zhen Guo, Guangke Li, Nan Sang · 2013 · Chemosphere