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A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm
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“On the other hand, developmental studies often make use of single-cell sequencing (31) and/or spatial expression profiles such as those based on in situ hybridization (32), allowing construction of higher-resolution transcriptomic maps that resolve cellular heterogeneity.”
From Behavior-related gene regulatory networks: A new level of organization in the brain (2020) · cites this paper as [32]
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Gaussian Processes for Machine Learning
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Genome-wide atlas of gene expression in the adult mouse brain
Lein, E. S., Hawrylycz, M. J., Ao, N., Ayres, M., Bensinger, A., Bernard, A., Boe, A. F., Boguski, M. S., Brockway, K. S., Byrnes, E. J., et al. (2007) · Nature · doi:10.1038/nature05453 · Cited by 5,572
GenePaint.org: an atlas of gene expression patterns in the mouse embryo
Visel, A. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh029 · Cited by 528
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Animal Transcription Networks as Highly Connected, Quantitative Continua
Biggin, M. D. (2011) · Developmental Cell · doi:10.1016/j.devcel.2011.09.008 · Cited by 308
Self-citationBehavior-related gene regulatory networks: A new level of organization in the brain
Sinha, S., Jones, B. M., Traniello, I. M., Bukhari, S. A., Halfon, M. S., Hofmann, H. A., Huang, S., Katz, P. S., Keagy, J., Lynch, V. J., et al. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1921625117 · Cited by 85
An Enhancer's Length and Composition Are Shaped by Its Regulatory Task
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“The 60 AP and 39 DV patterning enhancers were collected by Papatsenko et al. (2009) and provided here as Supplementary Data Sheet 1, and in this dataset, we considered the binding of 33 early patterning TFs (Fowlkes et al., 2008; MacArthur et al., 2009).”
BackgroundMethod
Metadata
- Authors
- Fowlkes, C. C., Hendriks, C. L. L., Keränen, S. V. E., Weber, G. H., Rübel, O., Huang, M.-Y., Chatoor, S., DePace, A. H., Simirenko, L., Henriquez, C., Beaton, A., Weiszmann, R., Celniker, S., Hamann, B., Knowles, D. W., Biggin, M. D., Eisen, M. B., & Malik, J.
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2008-04
- Volume
- 133
- Issue
- 2
- Pages
- 364-374
- ISSN
- 0092-8674
- Cited by
- 257
- References
- 3
- Language
- en
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- Fowlkes, C. C., Hendriks, C. L. L., Keränen, S. V. E., Weber, G. H., Rübel, O., Huang, M.-Y., Chatoor, S., DePace, A. H., Simirenko, L., Henriquez, C., Beaton, A., Weiszmann, R., Celniker, S., Hamann, B., Knowles, D. W., Biggin, M. D., Eisen, M. B., & Malik, J. (2008). A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm. Cell. https://doi.org/10.1016/j.cell.2008.01.053