Densely Interconnected Transcriptional Circuits Control Cell States in Human Hematopoiesis
Novershtern, Noa, Subramanian, Aravind, Lawton, Lee N., Mak, Raymond H., Haining, W. Nicholas, McConkey, Marie E., Habib, Naomi, Yosef, Nir +17 more·2011·Cell
Cited by (949)
Items 301–400 of 949
- Mediator Kinase Phosphorylation of STAT1 S727 Promotes Growth of Neoplasms With JAK-STAT ActivationI Niţulescu, Sara C. Meyer, Qiang Jeremy Wen, John D. Crispino, Madeleine E. Lemieux, Ross L. Levine, Henry E. Pelish, Matthew D. Shair · 2017 · EBioMedicine
- A hierarchical regulatory network analysis of the vitamin D induced transcriptome reveals novel regulators and complete VDR dependency in monocytesTimothy Warwick, Marcel H. Schulz, Stefan Günther, Ralf Gilsbach, Antonio Neme, Carsten Carlberg, Ralf Peter Brandes, Sabine Seuter · 2021 · Scientific Reports
- Dynamic Module Detection in Temporal Attributed Networks of CancersDongyuan Li, Shuyao Zhang, Xiaoke Ma · 2021 · IEEE Transactions on Computational Biology and Bioinformatics
- Myeloid nuclear differentiation antigen, neutrophil apoptosis and sepsisÉric Milot, Nasser Fotouhi‐Ardakani, János G. Filep · 2012 · Frontiers in Immunology
- IFN Regulatory Factor 8 Represses GM-CSF Expression in T Cells To Affect Myeloid Cell Lineage DifferentiationAmy V. Paschall, Ruihua Zhang, Chen‐Feng Qi, Kankana Bardhan, Liang Peng, Geming Lu, Jianjun Yang, Miriam Mérad, Tracy L. McGaha, Gang Zhou et al. · 2015 · The Journal of Immunology
- ImmQuant: a user-friendly tool for inferring immune cell-type composition from gene-expression dataAmit Frishberg, Avital Brodt, Yael Steuerman, Irit Gat‐Viks · 2016 · Bioinformatics
- Pandemic H1N1 influenza A viruses suppress immunogenic RIPK3-driven dendritic cell deathBoris Hartmann, Randy A. Albrecht, Elena Zaslavsky, German Nudelman, Hanna Pinças, Nada Marjanović, Michael Schotsaert, Carles Martínez‐Romero, Rafael Fenutría, Justin P. Ingram et al. · 2017 · Nature Communications
- HIV-1 infection of hematopoietic progenitor cells in vivo in humanized miceChristopher C. Nixon, Dimitrios N. Vatakis, Scott N. Reichelderfer, Dhaval Dixit, Sohn G. Kim, Christel H. Uíttenbogaart, Jerome A. Zack · 2013 · Blood
- Tribbles in acute leukemiaKai Ling Liang, Loveena Rishi, Karen Keeshan · 2013 · Blood
- BloodChIP: a database of comparative genome-wide transcription factor binding profiles in human blood cellsD. Chacon, D. Beck, Dilmi Perera, J. Wong, J. Pimanda · 2013 · Nucleic Acids Res.
- A Framework for Regularized Non-Negative Matrix Factorization, with Application to the Analysis of Gene Expression DataLeo Taslaman, Björn Nilsson · 2012 · PLoS ONE
- Nuclear microRNAs in normal hemopoiesis and cancerJohn E.J. Rasko, Justin J. -L. Wong · 2017 · Journal of Hematology & Oncology
- Epigenomic PU.1-VDR crosstalk modulates vitamin D signalingSabine Seuter, Antonio Neme, Carsten Carlberg · 2017 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
- Iterative Modeling Reveals Evidence of Sequential Transcriptional Control MechanismsChristine S. Cheng, Marcelo Behar, Gajendra W. Suryawanshi, Kristyn E. Feldman, Roberto Spreafico, Alexander Hoffmann · 2017 · Cell Systems
- Network Approaches for Dissecting the Immune SystemHao Shi, Koon‐Kiu Yan, Liang Ding, Chenxi Qian, Hongbo Chi, Jiyang Yu · 2020 · iScience
- Epigenetic regulation of neutrophil development and functionRenato Ostuni, Gioacchino Natoli, Marco Antonio Cassatella, Nicola Tamassia · 2016 · Seminars in Immunology
- A GWAS sequence variant for platelet volume marks an alternative DNM3 promoter in megakaryocytes near a MEIS1 binding siteSylvia Nürnberg, Augusto Rendon, Peter A. Smethurst, Dirk S. Paul, Katrin Voß, Jonathan N. Thon, Heather Lloyd-Jones, Jennifer G. Sambrook, Marloes R. Tijssen, Joseph E. Italiano et al. · 2012 · Blood
- Modular expression analysis reveals functional conservation between human Langerhans cells and mouse cross-priming dendritic cellsMaxim N. Artyomov, Adiel Munk, Laurent Gorvel, Daniel Korenfeld, Marina Cella, Thomas Tung, Eynav Klechevsky · 2015 · The Journal of Experimental Medicine
- Systems-Level Analysis of Innate ImmunityDaniel E. Zak, Vincent C. Tam, Alan A. Aderem · 2014 · Annual Review of Immunology
- Modulation of vitamin D signaling by the pioneer factor CEBPAVeijo Nurminen, Antonio Neme, Sabine Seuter, Carsten Carlberg · 2018 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
- Epithelial–mesenchymal transition-related factors in solid tumor and hematological malignancyYi-Sheng Chou, Muh‐Hwa Yang · 2015 · Journal of the Chinese Medical Association
- Long noncoding RNAs during normal and malignant hematopoiesisJuan R. Alvarez‐Dominguez, Wenqian Hu, Austin A. Gromatzky, Harvey F. Lodish · 2014 · International Journal of Hematology
- Concise Review: Multidimensional Regulation of the Hematopoietic Stem Cell StateI. Oh, R. Humphries · 2012 · Stem Cells
- Long-Chain Acyl-CoA Synthetase 1 Role in Sepsis and Immunity: Perspectives From a Parallel Review of Public Transcriptome Datasets and of the LiteratureJessica P Roelands, Mathieu Garand, Emily Hinchcliff, Ying Ma, Parin Shah, Mohammed Toufiq, Mohamed Alfaki, Wouter Hendrickx, Sabri Boughorbel, Darawan Rinchai et al. · 2019 · Frontiers in Immunology
- Generation of cDC-like cells from human induced pluripotent stem cells via Notch signalingKenichi Makino, Mark D. Long, Ryutaro Kajihara, Satoko Matsueda, Takaaki Oba, Kazunori Kanehira, Song Liu, Fumito Ito · 2022 · Journal for ImmunoTherapy of Cancer
- H2.0-like Homeobox Regulates Early Hematopoiesis and Promotes Acute Myeloid LeukemiaMasahiro Kawahara, Ashley Pandolfi, Boris Bartholdy, Laura Barreyro, Britta Will, Michael E. Roth, Ujunwa Cynthia Okoye-Okafor, Tihomira I. Todorova, María E. Figueroa, Ari M. Melnick et al. · 2012 · Cancer Cell
- Cellular sensing of extracellular purine nucleosides triggers an innate IFN-β responseRekha Dhanwani, Mariko Takahashi, Ian T. Mathews, Camille Lenzi, Artem Romanov, Jeramie D. Watrous, Bartijn C. H. Pieters, Catherine C. Hedrick, Chris A. Benedict, Joel M Linden et al. · 2020 · Science Advances
- BloodGen3Module: blood transcriptional module repertoire analysis and visualization using RDarawan Rinchai, Jessica P Roelands, Mohammed Toufiq, Wouter Hendrickx, Matthew C. Altman, Davide Bedognetti, Damien Chaussabel · 2021 · Bioinformatics
- Strategic Applications of Gene Expression: From Drug Discovery/Development to BedsideJane P. F. Bai, Alexander V. Alekseyenko, Alexander Statnikov, I‐Ming Wang, Peggy H. Wong · 2013 · The AAPS Journal
- Integrative analysis of breast cancer reveals prognostic haematopoietic activity and patient-specific immune response profilesFrederick S. Varn, Erik H. Andrews, David W. Mullins, Chao Cheng · 2016 · Nature Communications
- Cytolytic Activity (CYT) Score Is a Prognostic Biomarker Reflecting Host Immune Status in Hepatocellular Carcinoma (HCC)Hiroaki Wakiyama, Takaaki Masuda, Yushi Motomura, Qingjiang Hu, Taro Tobo, Hidetoshi Eguchi, Katsumi Sakamoto, Masakazu Hirakawa, Hiroshi Honda, Koshi Mimori · 2018 · Anticancer Research
- Diagnosing Cornelia de Lange syndrome and related neurodevelopmental disorders using RNA sequencingStefan Rentas, Komal S. Rathi, Maninder Kaur, Pichai Raman, Ian D. Krantz, Mahdi Sarmady, Ahmad N. Abou Tayoun · 2020 · Genetics in Medicine
- Definition of erythroid cell‐positive blood transcriptome phenotypes associated with severe respiratory syncytial virus infectionDarawan Rinchai, Matthew C. Altman, Océane Konza, Signe Hässler, Federica Martina, Mohammed Toufiq, Mathieu Garand, Basirudeen Syed Ahamed Kabeer, Karolina Palucka, Asunción Mejías et al. · 2020 · Clinical and Translational Medicine
- Immunosuppression and outcomes in adult patients with de novo acute myeloid leukemia with normal karyotypesFrancesca Ferraro, Christopher A. Miller, Keegan A. Christensen, Nichole Helton, Margaret O’Laughlin, Catrina C. Fronick, Robert S. Fulton, Jessica Kohlschmidt, Ann‐Kathrin Eisfeld, Clara Derber Bloomfield et al. · 2021 · Proceedings of the National Academy of Sciences
- The IKAROS Interaction with a Complex Including Chromatin Remodeling and Transcription Elongation Activities Is Required for HematopoiesisStefania Bottardi, Lionel O. Mavoungou, Helen Pak, Salima Daou, Vincent Bourgoin, Yahia Abdelali Lakehal, El Bachir Affar, Éric Milot · 2014 · PLoS Genetics
- BRPF1 is essential for development of fetal hematopoietic stem cellsLinya You, Lin Li, Jinfeng Zou, Kezhi Yan, Jad I. Belle, Anastasia Nijnik, Edwin Wang, Xiang‐Jiao Yang · 2016 · Journal of Clinical Investigation
- Higher HOPX expression is associated with distinct clinical and biological features and predicts poor prognosis in de novo acute myeloid leukemiaChien‐Chin Lin, Yueh-Chwen Hsu, Yi-Hung Li, Yuan‐Yeh Kuo, Hsin‐An Hou, Keng-Hsueh Lan, Tsung‐Chih Chen, Yi-Shiuan Tzeng, Yi-Yi Kuo, Chein‐Jun Kao et al. · 2017 · Haematologica
- SOX4 controls invariant NKT cell differentiation by tuning TCR signalingNidhi Malhotra, Yilin Qi, Nicholas A. Spidale, Michela Frascoli, Bing Miu, Okhyun Cho, Katelyn Sylvia, Joonsoo Kang · 2018 · The Journal of Experimental Medicine
- Elevated signature of a gene module coexpressed with CDC20 marks genomic instability in gliomaYunqiu Zhang, Jiuyi Li, Kaikai Yi, Jing Feng, Zhengmin Cong, Zheng Wang, Yanfei Wei, Fan Wu, Wen Cheng, Ayaz Ali Samo et al. · 2019 · Proceedings of the National Academy of Sciences
- Characterization of CD8+ T Cell Differentiation following SIVΔnef Vaccination by Transcription Factor Expression ProfilingJames M. Billingsley, Premeela A. Rajakumar, Michelle Connole, Nadine C. Salisch, Sama Adnan, Yury V. Kuzmichev, Henoch Sangjoon Hong, Roger Keith Reeves, Hyung‐Joo Kang, Wenjun Li et al. · 2015 · PLoS Pathogens
- Reconstruction of monocyte transcriptional regulatory network accompanies monocytic functions in human fibroblastsSuzuki, Takahiro, Nakano-Ikegaya, Mika, Yabukami-Okuda, Haruka, de Hoon, Michiel, Severin, Jessica, Saga-Hatano, Satomi, Shin, Jay W., Kubosaki, Atsutaka, Simon, Christophe, Hasegawa, Yuki et al. · 2012 · PLoS ONE
- Death domain fold proteins in immune signaling and transcriptional regulationYu‐San Huoh, Sun Hur · 2021 · FEBS Journal
- Acute myeloid leukemia: from NGS, through scRNA-seq, to CAR-T. dissect cancer heterogeneity and tailor the treatmentEdoardo Peroni, Maria Luigia Randi, Antonio Rosato, Stefano Cagnin · 2023 · Journal of Experimental & Clinical Cancer Research
- Systematic immune cell dysregulation and molecular subtypes revealed by single-cell RNA-seq of subjects with type 1 diabetesMohammad Amin Honardoost, Andreas Adinatha, Florian Schmidt, Bobby Ranjan, Maryam Ghaeidamini, Nirmala Arul Rayan, Michelle Gek Liang Lim, Ignasius Joanito, Quy Xiao Xuan Lin, Deepa Rajagopalan et al. · 2024 · Genome Medicine
- Vitamin D Receptor and RXR in the Post‐Genomic EraMark D. Long, Lara E. Sucheston‐Campbell, Moray J. Campbell · 2014 · Journal of Cellular Physiology
- Transcription Factor Networks Directing the Development, Function, and Evolution of Innate Lymphoid EffectorsJoonsoo Kang, Nidhi Malhotra · 2015 · Annual Review of Immunology
- Monocyte, Macrophage, and Dendritic Cell Development: the Human PerspectiveMatthew P. Collin, Venetia Bigley · 2016 · Microbiology Spectrum
- Cholesterol transport between red blood cells and lipoproteins contributes to cholesterol metabolism in bloodRyunosuke Ohkawa, Hann Low, Nigora Mukhamedova, Ying Fu, Shao-Jui Lai, Mai Sasaoka, Ayuko Hara, Azusa Yamazaki, Takahiro Kameda, Yuna Horiuchi et al. · 2020 · Journal of Lipid Research
- The DEK oncoprotein binds to highly and ubiquitously expressed genes with a dual role in their transcriptional regulationCarl Sandén, Linnea Järvstråt, Andreas Lennartsson, Per Ludvik Brattås, Björn Nilsson, Urban Gullberg · 2014 · Molecular Cancer
- NKL homeobox genes in leukemiaIrene Homminga, Rob Pieters, Jules P.P. Meijerink · 2011 · Leukemia
- Proteomic Profiling Identifies Distinct Protein Patterns in Acute Myelogenous Leukemia CD34+CD38- Stem-Like CellsSteven Mitchell Kornblau, Amina Ann Qutub, Hui Yao, Heather York, Yi Hua Qiu, David Graber, Farhad Ravandi, Jörge E. Cortes, Michael Andreeff, Nianxiang Zhang et al. · 2013 · PLoS ONE
- Equine arteritis virus long-term persistence is orchestrated by CD8+ T lymphocyte transcription factors, inhibitory receptors, and the CXCL16/CXCR6 axisMariano Carossino, Pouya Dini, Ted Kalbfleisch, Alan Thomas Loynachan, Igor F. Canisso, R. Frank Cook, Peter J. Timoney, Udeni B. R. Balasuriya · 2019 · PLoS Pathogens
- A vision and a prescription for big data–enabled medicineDamien Chaussabel, Bali Pulendran · 2015 · Nature Immunology
- Synergistic anti-AML effects of the LSD1 inhibitor T-3775440 and the NEDD8-activating enzyme inhibitor pevonedistat via transdifferentiation and DNA rereplicationYoshinori Ishikawa, K. Nakayama, Megumi Morimoto, A Mizutani, Akiko Nakayama, K Toyoshima, A Hayashi, S Takagi, Ryo Dairiki, H Miyashita et al. · 2017 · Oncogenesis
- BLVRB redox mutation defines heme degradation in a metabolic pathway of enhanced thrombopoiesis in humansSong Wu, Zongdong Li, Dmitri V. Gnatenko, Beibei Zhang, Lu Hua Zhao, Lisa E. Malone, Nedialka G. Markova, Timothy J. Mantle, Natasha M. Nesbitt, Wadie F. Bahou · 2016 · Blood
- An evolutionary recent IFN/IL-6/CEBP axis is linked to monocyte expansion and tuberculosis severity in humansMurilo Delgobo, Daniel A. G. B. Mendes, Edgar Gonzalez‐Kozlova, Edroaldo Lummertz da Rocha, Gabriela Flavia Rodrigues-Luiz, Lucas Zanon Mascarin, Greicy Brisa Malaquias Dias, Daniel de Oliveira Patricio, Tim Dierckx, Maira Assunção Bicca et al. · 2019 · eLife
- HES1 and HES4 have non-redundant roles downstream of Notch during early human T-cell developmentMatthias Decker, Marieke Lavaert, Juliette Roels, Laurentijn Tilleman, Bart Vandekerckhove, Georges Leclercq, Filip Van Nieuwerburgh, Pieter Van Vlierberghe, Tom Taghon · 2020 · Haematologica
- Landscape and Dynamics of the Transcriptional Regulatory Network During Natural Killer Cell DifferentiationKun Li, Yang Wu, Young Li, Qiaoni Yu, Tian Zhigang, Haiming Wei, Kun Qu · 2020 · Genomics Proteomics & Bioinformatics
- ICARUS, an interactive web server for single cell RNA-seq analysisAndrew Jiang, Klaus Lehnert, Linya You, Russell G. Snell · 2022 · Nucleic Acids Research
- GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior KnowledgeWagner, Florian · 2015 · PLOS ONE
- Antioxidant Functions of Vitamin D and CYP11A1-Derived Vitamin D, Tachysterol, and Lumisterol Metabolites: Mechanisms, Clinical Implications, and Future DirectionsHéctor Vázquez‐Lorente, Lourdes Herrera‐Quintana, Laura Jiménez-Sánchez, Beatriz Fernández-Perea, Julio Plaza‐Díaz · 2024 · Antioxidants
- CD41 Marks the Initial Myelo-Erythroid Lineage Specification in Adult Mouse Hematopoiesis: Redefinition of Murine Common Myeloid ProgenitorKohta Miyawaki, Yojiro Arinobu, Hiromi Iwasaki, Kentaro Kohno, Hirofumi Tsuzuki, Tadafumi Iino, Takahiro Shima, Yoshikane Kikushige, Katsuto Takenaka, Toshihiro Miyamoto et al. · 2014 · Stem Cells
- Leukemia cell infiltration causes defective erythropoiesis partially through MIP-1α/CCL3Yan Wang, A Gao, Huijuan Zhao, Ping Lu, H Cheng, Fang Dong, Yuemin Gong, S. Ma, Yizhou Zheng, Han Zhang et al. · 2016 · Leukemia
- Trib1 regulates eosinophil lineage commitment and identity by restraining the neutrophil programEthan A. Mack, Sarah J. Stein, Kelly Rome, Lanwei Xu, Gerald B. W. Wertheim, Rossana C. N. Melo, Warren S. Pear · 2019 · Blood
- Sequencing of RNA in single cells reveals a distinct transcriptome signature of hematopoiesis in GATA2 deficiencyZhijie Wu, Shouguo Gao, Carrie E. Diamond, Sachiko Kajigaya, Jinguo Chen, Rongye Shi, Cindy L. Palmer, Amy P. Hsu, Katherine R. Calvo, Dennis D. Hickstein et al. · 2020 · Blood Advances
- Origin, prospective identification, and function of circulating endothelial colony-forming cells in mice and humansYang Lin, Kimihiko Banno, Chang-Hyun Gil, Jered Myslinski, Takashi Hato, William Christopher Shelley, Hongyu Gao, Xiaoling Xuei, Yunlong Liu, David Patrick Basile et al. · 2023 · JCI Insight
- Transcription factors interfering with dedifferentiation induce cell type-specific transcriptional profilesTakafusa Hikichi, Ryo Matoba, Takashi Ikeda, Akira Watanabe, Takuya Yamamoto, Satoko Yoshitake, Miwa Tamura‐Nakano, Takayuki Kimura, Masayoshi Kamon, Mari Shimura et al. · 2013 · Proceedings of the National Academy of Sciences
- An integrated approach to characterize transcription factor and microRNA regulatory networks involved in Schwann cell response to peripheral nerve injuryLi‐Wei Chang, Andreu Viader, Nobish Varghese, Jacqueline E. Payton, Jeffrey Milbrandt, Rakesh Nagarajan · 2013 · BMC Genomics
- HIV-1 infection depletes human CD34+CD38- hematopoietic progenitor cells via pDC-dependent mechanismsGuangming Li, Juanjuan Zhao, Liang Cheng, Qi Jiang, Sheng Kan, Enqiang Qin, Bo Tu, Xin Zhang, Liguo Zhang, Lishan Su et al. · 2017 · PLoS Pathogens
- Simultaneous B and T cell acute lymphoblastic leukemias in zebrafish driven by transgenic MYC: implications for oncogenesis and lymphopoiesisChiara Borga, Gilseung Park, Clay A. Foster, Jessica Burroughs-Garcìa, Matteo Marchesin, Rikin K. Shah, Ameera Hasan, Syed Talha Ahmed, Silvia Bresolin, Lance A. Batchelor et al. · 2018 · Leukemia
- Far Upstream Element Binding Protein Plays a Crucial Role in Embryonic Development, Hematopoiesis, and Stabilizing Myc Expression LevelsWeixin Zhou, Yang Jo Chung, Edgardo R. Parrilla Castellar, Ying Zheng, Hye‐Jung Chung, Russell Bandle, Juhong Liu, Lino Tessarollo, Eric Batchelor, Peter D. Aplan et al. · 2016 · American Journal Of Pathology
- Genome-wide effects of chromatin on vitamin D signalingAndrea Hänel, Henna-Riikka Malmberg, Carsten Carlberg · 2020 · Journal of Molecular Endocrinology
- C/EBPα is required for development of dendritic cell progenitorsRobert S. Welner, Deepak Bararia, Giovanni Amabile, Akos Gabor Czibere, Touati Benoukraf, Christian Bach, K. D. Senali Abayratna Wansa, Min Ye, Hong Zhang, Tadafumi Iino et al. · 2013 · Blood
- Current transcriptomics in pig immunity researchMartine Schroyen, Christopher Keith Tuggle · 2014 · Mammalian Genome
- Identification of nuclear-enriched miRNAs during mouse granulopoiesisJustin J. -L. Wong, William Ritchie, Dadi Gao, Katherine A. Lau, Maria Gonzalez, Anupma Choudhary, Ryan J. Taft, John E.J. Rasko, Jeff Holst · 2014 · Journal of Hematology & Oncology
- StemMapper: a curated gene expression database for stem cell lineage analysisJosé Pinto, Rui S. R. Machado, Ramiro Magno, Daniel V. Oliveira, Susana Machado, Raquel P. Andrade, José Bragança, Isabel Duarte, Matthias Erwin Futschik · 2017 · Nucleic Acids Research
- Attenuated DNA damage responses and increased apoptosis characterize human hematopoietic stem cells exposed to irradiationShahar Biechonski, Leonid Olender, Adi Zipin‐Roitman, Muhammad Yassin, Nasma Aqaqe, Victoria Marcu‐Malina, Melanie Rall-Scharpf, Magan Trottier, M. Stephen Meyn, Lisa Wiesmüller et al. · 2018 · Scientific Reports
- Myeloid lncRNA LOUP mediates opposing regulatory effects of RUNX1 and RUNX1-ETO in t(8;21) AMLBon Q. Trinh, Simone Ummarino, Yanzhou Zhang, Alexander K. Ebralidze, Mahmoud Adel Bassal, Tuan M. Nguyen, Gerwin Heller, Rory Coffey, Danielle E. Tenen, Emiel van der Kouwe et al. · 2021 · Blood
- Induced differentiation of acute myeloid leukemia cells by activation of retinoid X and liver X receptorsP V Sanchez, Spencer T. Glantz, Sarah Scotland, Margaret T. Kasner, Martin P Carroll · 2013 · Leukemia
- Comparative transcriptomic analysis of hematopoietic system between human and mouse by Microwell-seqShujing Lai, Wentao Huang, Yang Xu, Mengmeng Jiang, Haide Chen, Chen Cheng, Yingru Lu, He Huang, Guoji Guo, Xiaoping Han · 2018 · Cell Discovery
- Coordinated immune networks in leukemia bone marrow microenvironments distinguish response to cellular therapyKatie Maurer, Cameron Y. Park, Shouvik Mani, Mehdi Borji, Florian Raths, Kenneth H. Gouin, Livius Penter, Yinuo Jin, Jia Yi Zhang, Crystal S. Shin et al. · 2025 · Science Immunology
- Elevated TRIB 2 with NOTCH 1 activation in paediatric/adult T ‐ ALLMaura Hannon, Fiona Lohan, Yücel Erbilgin, Müge Sayitoğlu, Kathleen O’Hagan, Ken Mills, Uğur Özbek, Karen Keeshan · 2012 · British Journal of Haematology
- Hematopoietic Stem and Progenitor Cells Acquire Distinct DNA-Hypermethylation During in vitro CultureCarola Ingrid Weidner, Thomas Walenda, Qiong Lin, Monika Martina Wölfler, Bernd Denecke, Ivan G. Costa, Martin Zenke, Wolfgang Wagner · 2013 · Scientific Reports
- Epigenetic Regulation of B Lymphocyte Differentiation, Transdifferentiation, and ReprogrammingBruna Barneda‐Zahonero, Lidia Román-González, Olga Collazo, Tokameh Mahmoudi, Maribel Parra · 2012 · Comparative and Functional Genomics
- ETS transcription factor family member GABPA contributes to vitamin D receptor target gene regulationSabine Seuter, Antonio Neme, Carsten Carlberg · 2017 · The Journal of Steroid Biochemistry and Molecular Biology
- A Neutrophil-Driven Inflammatory Signature Characterizes the Blood Transcriptome Fingerprint of PsoriasisArun Rawat, Darawan Rinchai, Mohammed Toufiq, Alexandra Katharina Marr, Tomoshige Kino, Mathieu Garand, Zohreh Tatari-Calderone, Basirudeen Syed Ahamed Kabeer, Navaneethakrishnan Krishnamoorthy, Davide Bedognetti et al. · 2020 · Frontiers in Immunology
- Bayesian multi-source regression and monocyte-associated gene expression predict BCL-2 inhibitor resistance in acute myeloid leukemiaBrian S. White, Suleiman A. Khan, Mike J. Mason, Muhammad Ammad-ud-din, Swapnil Potdar, Disha Malani, Heikki A Kuusanmäki, Brian J. Druker, Caroline Akemi Heckman, Olli Kallioniemi et al. · 2021 · npj Precision Oncology
- Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levelsYuansheng Zhang, Dong Zou, Tongtong Zhu, Tianyi Xu, Ming Chen, Guangyi Niu, Wenting Zong, Rong Pan, Wei Jing, Jian Sang et al. · 2021 · Nucleic Acids Research
- A Pan-Cancer Modular Regulatory Network Analysis to Identify Common and Cancer-Specific Network ComponentsSara Knaack, Alireza Fotuhi Siahpirani, Sushmita Roy · 2014 · Cancer Informatics
- Hematopoietic stem cell heterogeneity and age-associated platelet bias are evolutionarily conservedMerve Aksöz, Grigore Gafencu, Bilyana Stoilova, Mario Buono, Ying Zhang, Sven Turkalj, Yiran Meng, Niels Asger Jakobsen, Marlen Metzner, Sally‐Ann Clark et al. · 2024 · Science Immunology
- Genetic and Transcriptional Contributions to Relapse in Normal Karyotype Acute Myeloid LeukemiaAllegra A. Petti, Saad M. Khan, Ziheng Xu, Nichole Helton, Catrina C. Fronick, Robert Fulton, Sai M. Ramakrishnan, Sridhar Nonavinkere Srivatsan, Sharon E. Heath, Peter Westervelt et al. · 2021 · Blood Cancer Discovery
- Targeting Tetramer-Forming GABPβ Isoforms Impairs Self-Renewal of Hematopoietic and Leukemic Stem CellsShuyang Yu, Xuefang Jing, John D. Colgan, Dongmei Zhao, Hai‐Hui Xue · 2012 · Cell stem cell
- Plenary Perspective: The complexity of constitutive and inducible gene expression in mononuclear phagocytesDavid Arthur Hume · 2012 · Journal of Leukocyte Biology
- Transcriptional networks in acute myeloid leukemiaJulie A.I. Thoms, Dominik Beck, John E. Pimanda · 2019 · Genes Chromosomes and Cancer
- Homeostatic Milieu Induces Production of Deoxyribonuclease 1–like 3 from Myeloid CellsShoichiro Inokuchi, Hiroki Mitoma, Shotaro Kawano, Shota Nakano, Masahiro Ayano, Yasutaka Kimoto, Mitsuteru Akahoshi, Yojiro Arinobu, Hiroshi Tsukamoto, Koichi Akashi et al. · 2020 · The Journal of Immunology
- Inflammatory macrophage–associated 3-gene signature predicts subclinical allograft injury and graft survivalTej Deepak Azad, Michele Donato, Line Heylen, Andrew Bo Liu, Shai S. Shen-Orr, Timothy E. Sweeney, Jonathan S. Maltzman, Maarten Naesens, Purvesh Khatri · 2018 · JCI Insight
- CHIT1 at diagnosis predicts faster disability progression and reflects early microglial activation in multiple sclerosisBeliën, Jarne, Swinnen, Stijn, D’hondt, Robbe, Verdú de Juan, Laia, Dedoncker, Nina, Matthys, Patrick, Bauer, Jan, Vens, Celine, Moylett, Sinéad, Dubois, Bénédicte · 2024 · Nature Communications
- Vitamin D and Aging: Central Role of ImmunocompetenceCarsten Carlberg, Eunike Velleuer · 2024 · Nutrients
- Constructing Logical Models of Gene Regulatory Networks by Integrating Transcription Factor–DNA Interactions with Expression Data: An Entropy-Based ApproachGuy Karlebach, Ron Shamir A · 2012 · Journal of Computational Biology
- EBI2 in splenic and local immune responses and in autoimmunityLine Barington, Florian Wanke, Kristine Niss Arfelt, Peter Johannes Holst, Florian C. Kurschus, METTE MARIE ROSENKILDE · 2018 · Journal of Leukocyte Biology