Diversity among POU transcription factors in chromatin recognition and cell fate reprogramming
Open accessAbstract
The POU (Pit-Oct-Unc) protein family is an evolutionary ancient group of transcription factors (TFs) that bind specific DNA sequences to direct gene expression programs. The fundamental importance of POU TFs to orchestrate embryonic development and to direct cellular fate decisions is well established, but the molecular basis for this activity is insufficiently understood. POU TFs possess a bipartite 'two-in-one' DNA binding domain consisting of two independently folding structural units connected by a poorly conserved and flexible linker. Therefore, they represent a paradigmatic example to study the molecular basis for the functional versatility of TFs. Their modular architecture endows POU TFs with the capacity to accommodate alternative composite DNA sequences by adopting different quaternary structures. Moreover, associations with partner proteins crucially influence the selection of their DNA binding sites. The plentitude of DNA binding modes confers the ability to POU TFs to regulate distinct genes in the context of different cellular environments. Likewise, different binding modes of POU proteins to DNA could trigger alternative regulatory responses in the context of different genomic locations of the same cell. Prominent POU TFs such as Oct4, Brn2, Oct6 and Brn4 are not only essential regulators of development but have also been successfully employed to reprogram somatic cells to pluripotency and neural lineages. Here we review biochemical, structural, genomic and cellular reprogramming studies to examine how the ability of POU TFs to select regulatory DNA, alone or with partner factors, is tied to their capacity to epigenetically remodel chromatin and drive specific regulatory programs that give cells their identities.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The study examined expression patterns of several transcription factor families (Fox, Klf, Lhx, Nkx, Nr, Pax, Pou, Prdm, Sox, Tbx), all of which have been shown to have important roles in spatial patterning, cell-type specification and differentiation during development.
“We examined the expression patterns of several transcription factor families (Extended Data Fig. 13), including forkhead box (Fox), Krüppel-like factor (Klf), LIM homeobox (Lhx), NKX-homeodomain (Nkx), nuclear receptor (Nr), Paired box (Pax), POU domain (Pou), positive regulatory domain (Prdm), SRY-related HMG-box (Sox), and T-box (Tbx), all of which have been shown to have important roles in”
From A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain (2023) · cites this paper as [102]
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
1 retracted
Liang, Q., Fujita, R., Yamashita, T., Angulo, S. L., Rhinn, H., Rhee, D. B., Doege, C. A., Chau, L., Aubry, L., Vanti, W. B., et al. (2011) · Cell · doi:10.1016/j.cell.2011.07.007 · Cited by 230 · see citing works
RetractedTakahashi, K., & Yamanaka, S. (2006) · Cell · doi:10.1016/j.cell.2006.07.024 · Cited by 26,673 · see citing works
Induction of Pluripotent Stem Cells from Adult Human Fibroblasts by Defined Factors
Takahashi, K., Tanabe, K., Ohnuki, M., Narita, M., Ichisaka, T., Tomoda, K., & Yamanaka, S. (2007) · Cell · doi:10.1016/j.cell.2007.11.019 · Cited by 20,221 · see citing works
Heinz, S., Benner, C., Spann, N., Bertolino, E., Lin, Y. C., Laslo, P., Cheng, J. X., Murre, C., Singh, H., & Glass, C. K. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.05.004 · Cited by 13,382 · see citing works
Induced Pluripotent Stem Cell Lines Derived from Human Somatic Cells
Yu, J., Vodyanik, M. A., Smuga-Otto, K., Antosiewicz-Bourget, J., Frane, J. L., Tian, S., Nie, J., Jonsdottir, G. A., Ruotti, V., Stewart, R., et al. (2007) · Science · doi:10.1126/science.1151526 · Cited by 10,310 · see citing works
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
Bernstein, B. E., Mikkelsen, T. S., Xie, X., Kamal, M., Huebert, D. J., Cuff, J., Fry, B., Meissner, A., Wernig, M., Plath, K., et al. (2006) · Cell · doi:10.1016/j.cell.2006.02.041 · Cited by 5,361 · see citing works
Core Transcriptional Regulatory Circuitry in Human Embryonic Stem Cells
Boyer, L. A., Lee, T. I., Cole, M. F., Johnstone, S. E., Levine, S. S., Zucker, J. P., Guenther, M. G., Kumar, R. M., Murray, H. L., Jenner, R. G., et al. (2005) · Cell · doi:10.1016/j.cell.2005.08.020 · Cited by 4,505 · see citing works
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
Mikkelsen, T. S., Ku, M., Jaffe, D. B., Issac, B., Lieberman, E., Giannoukos, G., Alvarez, P., Brockman, W., Kim, T.-K., Koche, R. P., et al. (2007) · Nature · doi:10.1038/nature06008 · Cited by 4,129 · see citing works
Niwa, H., Miyazaki, J., & Smith, A. G. (2000) · Nature Genetics · doi:10.1038/74199 · Cited by 3,606 · see citing works
Nichols, J., Zevnik, B., Anastassiadis, K., Niwa, H., Klewe-Nebenius, D., Chambers, I., Schöler, H. R., & Smith, A. G. (1998) · Cell · doi:10.1016/s0092-8674(00)81769-9 · Cited by 3,394 · see citing works
Reprogramming of human somatic cells to pluripotency with defined factors
Park, I.-H., Zhao, R., West, J. A., Yabuuchi, A., Huo, H.-G., Ince, T., Lerou, P., Lensch, M., & Daley, G. Q. (2008) · Nature · doi:10.1038/nature06534 · Cited by 3,028 · see citing works
Direct conversion of fibroblasts to functional neurons by defined factors
Vierbuchen, T., Ostermeier, A., Pang, Z. P., Kokubu, Y., Südhof, T. C., & Wernig, M. (2010) · Nature · doi:10.1038/nature08797 · Cited by 3,017 · see citing works
Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts
Nakagawa, M., Koyanagi, M., Tanabe, K., Takahashi, K., Ichisaka, T., Aoi, T., Okita, K., Mochiduki, Y., Takizawa, N., & Yamanaka, S. (2007) · Nature Biotechnology · doi:10.1038/nbt1374 · Cited by 2,781 · see citing works
Chen, X., Han, X., Yuan, P., Fang, F., Huss, M., Vega, V. B., Wong, E., Orlov, Y. L., Zhang, W., Jiang, J., et al. (2008) · Cell · doi:10.1016/j.cell.2008.04.043 · Cited by 2,474 · see citing works
The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
Loh, Y., Wu, Q., Chew, J.-L., Vega, V. B., Zhang, W., Chen, X., Bourque, G., George, J., Leong, B., Liu, J., et al. (2006) · Nature Genetics · doi:10.1038/ng1760 · Cited by 2,438 · see citing works
Disease-Specific Induced Pluripotent Stem Cells.
Park, I.-H., Arora, N., Huo, H., Maherali, N., Ahfeldt, T., Shimamura, A., Lensch, M. W., Cowan, C., Hochedlinger, K., & Daley, G. Q. (2008) · Cell · doi:10.1016/j.cell.2008.07.041 · Cited by 2,196 · see citing works
Dimos, J. T., Rodolfa, K. T., Niakan, K. K., Weisenthal, L. M., Mitsumoto, H., Chung, W. K., Croft, G. F., Saphier, G., Leibel, R. L., Goland, R., et al. (2008) · Science · doi:10.1126/science.1158799 · Cited by 1,959 · see citing works
Mediator and cohesin connect gene expression and chromatin architecture
Kagey, M. H., Newman, J. J., Bilodeau, S., Zhan, Y., Orlando, D. A., van Berkum, N. L., Ebmeier, C. C., Goossens, J., Rahl, P. B., Levine, S. S., et al. (2010) · Nature · doi:10.1038/nature09380 · Cited by 1,939 · see citing works
Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
Weirauch, M. T., Yang, A. W. H., Albu, M., Coté, A. G., Montenegro‐Montero, A., Drewe, P., Najafabadi, H. S., Lambert, S. A., Mann, I. K., Cook, K. B., et al. (2014) · Cell · doi:10.1016/j.cell.2014.08.009 · Cited by 1,705 · see citing works
Induced pluripotent stem cells generated without viral integration
Stadtfeld, M., Nagaya, M., Utikal, J., Weir, G., & Hochedlinger, K. (2008) · Science · doi:10.1126/science.1162494 · Cited by 1,683 · see citing works
Soldner, F., Hockemeyer, D., Beard, C., Gao, Q., Bell, G. W., Cook, E. G., Hargus, G., Blak, A., Cooper, O., Mitalipova, M., et al. (2009) · Cell · doi:10.1016/j.cell.2009.02.013 · Cited by 1,615 · see citing works
Induced pluripotent stem cells from a spinal muscular atrophy patient
Ebert, A. D., Yu, J., Rose, F. F., Mattis, V. B., Lorson, C. L., Thomson, J. A., & Svendsen, C. N. (2009) · Nature · doi:10.1038/nature07677 · Cited by 1,441 · see citing works
Efficient and rapid generation of induced pluripotent stem cells from human keratinocytes
Aasen, T., Raya, A., Barrero, M. J., Garreta, E., Consiglio, A., Gonzalez, F., Vassena, R., Bilić, J., Pekarik, V., Tiscornia, G., et al. (2008) · Nature Biotechnology · doi:10.1038/nbt.1503 · Cited by 1,423 · see citing works
Chromatin signatures of pluripotent cell lines
Azuara, V., Perry, P., Sauer, S., Spivakov, M., Jørgensen, H. F., John, R. M., Gouti, M., Casanova, M., Warnes, G., Merkenschlager, M., et al. (2006) · Nature Cell Biology · doi:10.1038/ncb1403 · Cited by 1,357 · see citing works
Induction of pluripotent stem cells from primary human fibroblasts with only Oct4 and Sox2
Huangfu, D., Osafune, K., Maehr, R., Guo, W., Eijkelenboom, A., Chen, S., Muhlestein, W. E., & Melton, D. A. (2008) · Nature Biotechnology · doi:10.1038/nbt.1502 · Cited by 1,342 · see citing works
Deep mutational scanning: a new style of protein science
Fowler, D. M., & Fields, S. (2014) · Nature Methods · doi:10.1038/nmeth.3027 · Cited by 1,287 · see citing works
Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5
Clark, K., Halay, E. D., Lai, E., & Burley, S. K. (1993) · Nature · doi:10.1038/364412a0 · Cited by 1,275 · see citing works
Impact of cytosine methylation on DNA binding specificities of human transcription factors
Yin, Y., Morgunova, E., Jolma, A., Kaasinen, E., Sahu, B., Khund-Sayeed, S., Das, P. K., Kivioja, T., Dave, K., Zhong, F., et al. (2017) · Science · doi:10.1126/science.aaj2239 · Cited by 1,257 · see citing works
Induction of human neuronal cells by defined transcription factors
Pang, Z. P., Yang, N., Vierbuchen, T., Ostermeier, A., Fuentes, D., Yang, T. Q., Citri, A., Sebastiano, V., Marro, S. G., Südhof, T. C., et al. (2011) · Nature · doi:10.1038/nature10202 · Cited by 1,249 · see citing works
DNA-Binding Specificities of Human Transcription Factors
Jolma, A., Yan, J., Whitington, T., Toivonen, J., Nitta, K. R., Rastas, P. M. A., Morgunova, E. Y., Enge, M., Taipale, M., Wei, G., et al. (2013) · Cell · doi:10.1016/j.cell.2012.12.009 · Cited by 1,228 · see citing works
Opening of Compacted Chromatin by Early Developmental Transcription Factors HNF3 (FoxA) and GATA-4
Cirillo, L. A., Lin, F. R., Cuesta, I., Friedman, D., Jarník, M., & Zaret, K. S. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00459-8 · Cited by 1,188 · see citing works
Transcriptional Regulation of Nanog by OCT4 and SOX2
Rodda, D. J., Chew, J.-L., Lim, L. H., Loh, Y., Wang, B., Ng, H., & Robson, P. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m502573200 · Cited by 1,140 · see citing works
Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
Arnold, C. D., Gerlach, D., Stelzer, C., Boryń, Ł. M., Rath, M., & Stark, A. (2013) · Science · doi:10.1126/science.1232542 · Cited by 1,125 · see citing works
Linking the p53 tumour suppressor pathway to somatic cell reprogramming
Kawamura, T., Suzuki, J., Wang, Y. V., Menendez, S., Morera, L. B., Raya, A., Wahl, G. M., & Belmonte, J. C. I. (2009) · Nature · doi:10.1038/nature08311 · Cited by 1,115 · see citing works
Generation of Pluripotent Stem Cells from Adult Mouse Liver and Stomach Cells
Aoi, T., Yae, K., Nakagawa, M., Ichisaka, T., Okita, K., Takahashi, K., Chiba, T., & Yamanaka, S. (2008) · Science · doi:10.1126/science.1154884 · Cited by 1,055 · see citing works
Generation of human induced pluripotent stem cells from dermal fibroblasts
Lowry, W. E., Richter, L., Yachechko, R., Pyle, A. D., Tchieu, J., Sridharan, R., Clark, A. T., & Plath, K. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0711983105 · Cited by 1,041 · see citing works
Diversity and Complexity in DNA Recognition by Transcription Factors
Badis, G., Berger, M., Philippakis, A. A., Talukder, S., Gehrke, A. R., Jaeger, S., Chan, E. T., Metzler, G., Vedenko, A., Chen, X., et al. (2009) · Science · doi:10.1126/science.1162327 · Cited by 1,031 · see citing works
Stepwise reprogramming of B cells into macrophages.
Xie, H.-F., Ye, M., Feng, R., & Graf, T. (2004) · Cell · doi:10.1016/s0092-8674(04)00419-2 · Cited by 1,030 · see citing works
Weintraub, H. M., Tapscott, S. J., Davis, R. L., Thayer, M. J., Adam, M. A., Lassar, A. B., & Miller, A. D. (1989) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.86.14.5434 · Cited by 985 · see citing works
A tissue-specific transcription factor containing a homeodomain specifies a pituitary phenotype
Ingraham, H. A., Chen, R., Mangalam, H. J., Elsholtz, H. P., Flynn, S. E., Lin, C. R., Simmons, D. M., Swanson, L. W., & Rosenfeld, M. G. (1988) · Cell · doi:10.1016/0092-8674(88)90038-4 · Cited by 978 · see citing works
The Ink4/Arf locus is a barrier for iPS cell reprogramming
Li, H., Collado, M., Villasante, A., Strati, K., Ortega, S., Cañamero, M., Blasco, M. A., & Serrano, M. (2009) · Nature · doi:10.1038/nature08290 · Cited by 968 · see citing works
Pluripotent stem cells induced from adult neural stem cells by reprogramming with two factors
Kim, J. B., Zaehres, H., Wu, G., Gentile, L., Ko, K., Sebastiano, V., Araúzo-Bravo, M. J., Ruau, D., Han, D., Zenke, M., et al. (2008) · Nature · doi:10.1038/nature07061 · Cited by 956 · see citing works
McGinnis, W. J., Garber, R. L., Wirz, J., Kuroiwa, A., & Gehring, W. J. (1984) · Cell · doi:10.1016/0092-8674(84)90370-2 · Cited by 941 · see citing works
Oct4-Induced Pluripotency in Adult Neural Stem Cells
Kim, J. B., Sebastiano, V., Wu, G., Araúzo-Bravo, M. J., Sasse, P., Gentile, L., Ko, K., Ruau, D., Ehrich, M., van den Boom, D., et al. (2009) · Cell · doi:10.1016/j.cell.2009.01.023 · Cited by 931 · see citing works
MicroRNA-mediated conversion of human fibroblasts to neurons
Yoo, A. S., Sun, A. X., Li, L., Shcheglovitov, A., Portmann, T., Li, Y., Lee-Messer, C., Dolmetsch, R. E., Tsien, R. W., & Crabtree, G. R. (2011) · Nature · doi:10.1038/nature10323 · Cited by 919 · see citing works
Shi, Y., Desponts, C., Tae, J., Hahm, H. S., Schöler, H. R., & Ding, S. (2008) · Cell stem cell · doi:10.1016/j.stem.2008.10.004 · Cited by 898 · see citing works
Soufi, A., Donahue, G., & Zaret, K. S. (2012) · Cell · doi:10.1016/j.cell.2012.09.045 · Cited by 887 · see citing works
Modelling pathogenesis and treatment of familial dysautonomia using patient-specific iPSCs
Lee, G., Papapetrou, E. P., Kim, H., Chambers, S. M., Tomishima, M. J., Fasano, C. A., Ganat, Y. M., Menon, J., Shimizu, F., Viale, A. J., et al. (2009) · Nature · doi:10.1038/nature08320 · Cited by 870 · see citing works
SOX17 Is a Critical Specifier of Human Primordial Germ Cell Fate
Irie, N., Weinberger, L., Tang, W. W. C., Kobayashi, T., Viukov, S. V., Manor, Y. S., Dietmann, S., Hanna, J. H., & Surani, M. A. (2014) · Cell · doi:10.1016/j.cell.2014.12.013 · Cited by 839 · see citing works
Expression of a large family of POU-domain regulatory genes in mammalian brain development
He, X., Treacy, M. N., Simmons, D. M., Ingraham, H. A., Swanson, L. W., & Rosenfeld, M. G. (1989) · Nature · doi:10.1038/340035a0 · Cited by 830 · see citing works
Direct Reprogramming of Terminally Differentiated Mature B Lymphocytes to Pluripotency
Hanna, J. H., Markoulaki, S., Schorderet, P., Carey, B. W., Beard, C., Wernig, M., Creyghton, M. P., Steine, E. J., Cassady, J. P., Foreman, R. K., et al. (2008) · Cell · doi:10.1016/j.cell.2008.03.028 · Cited by 815 · see citing works
Yuan, H., Corbi, N., Basilico, C., & Dailey, L. (1995) · Genes & Development · doi:10.1101/gad.9.21.2635 · Cited by 811 · see citing works
Promotion of Reprogramming to Ground State Pluripotency by Signal Inhibition
Silva, J., Barrandon, O., Nichols, J., Kawaguchi, J., Theunissen, T. W., & Smith, A. G. (2008) · PLoS Biology · doi:10.1371/journal.pbio.0060253 · Cited by 810 · see citing works
Scott, M. P., & Weiner, A. J. (1984) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.81.13.4115 · Cited by 790 · see citing works
Sox10, a Novel Transcriptional Modulator in Glial Cells
Kuhlbrodt, K., Herbarth, B., Sock, E., Hermans-Borgmeyer, I., & Wegner, M. (1998) · The Journal of Neuroscience · doi:10.1523/jneurosci.18-01-00237.1998 · Cited by 781 · see citing works
Pioneer Transcription Factors Target Partial DNA Motifs on Nucleosomes to Initiate Reprogramming
Soufi, A., Garcia, M. F., Jaroszewicz, A., Osman, N., Pellegrini, M., & Zaret, K. S. (2015) · Cell · doi:10.1016/j.cell.2015.03.017 · Cited by 780 · see citing works
Transposable elements have rewired the core regulatory network of human embryonic stem cells
Kunarso, G., Chia, N., Jeyakani, J., Hwang, C., Lu, X., Chan, Y.-S., Ng, H., & Bourque, G. (2010) · Nature Genetics · doi:10.1038/ng.600 · Cited by 777 · see citing works
The pituitary-specific transcription factor GHF-1 is a homeobox-containing protein
Bodner, M., Castrillo, J.-L., Theill, L. E., Deerinck, T. J., Ellisman, M. H., & Karin, M. (1988) · Cell · doi:10.1016/0092-8674(88)90037-2 · Cited by 757 · see citing works
New type of POU domain in germ line-specific protein Oct-4
Schöler, H. R., Ruppert, S., Suzuki, N., Chowdhury, K., & Gruß, P. (1990) · Nature · doi:10.1038/344435a0 · Cited by 745 · see citing works
Herr, W., Sturm, R. A., Clerc, R. G., Corcoran, L. M., Baltimore, D., Sharp, P. A., Ingraham, H. A., Rosenfeld, M. G., Finney, M., & Ruvkun, G. (1988) · Genes & Development · doi:10.1101/gad.2.12a.1513 · Cited by 743 · see citing works
Direct conversion of human fibroblasts to dopaminergic neurons
Pfisterer, U., Kirkeby, A., Torper, O., Wood, J. C., Nelander, J., Dufour, A., Björklund, A., Lindvall, O., Jakobsson, J., & Parmar, M. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1105135108 · Cited by 740 · see citing works
Crystal structure of globular domain of histone H5 and its implications for nucleosome binding
Ramakrishnan, V., Finch, J. T., Graziano, V., Lee, P. L., & Sweet, R. M. (1993) · Nature · doi:10.1038/362219a0 · Cited by 736 · see citing works
A novel octamer binding transcription factor is differentially expressed in mouse embryonic cells
Okamoto, K., Okazawa, H., Okuda, A., Sakai, M., Muramatsu, M., & Hamada, H. (1990) · Cell · doi:10.1016/0092-8674(90)90597-8 · Cited by 723 · see citing works
Direct reprogramming of human neural stem cells by OCT4
Kim, J. B., Greber, B., Araúzo-Bravo, M. J., Meyer, J., Park, K. I., Zaehres, H., & Schöler, H. R. (2009) · Nature · doi:10.1038/nature08436 · Cited by 692 · see citing works
Direct conversion of human fibroblasts to multilineage blood progenitors
Szabo, E., Rampalli, S., Risueño, R. M., Schnerch, A., Mitchell, R. R., Fiebig‐Comyn, A., Levadoux‐Martin, M., & Bhatia, M. (2010) · Nature · doi:10.1038/nature09591 · Cited by 691 · see citing works
The ubiquitous octamer-binding protein Oct-1 contains a POU domain with a homeo box subdomain.Preprint
Sturm, R. A., Das, G., & Herr, W. (1988) · Genes & Development · doi:10.1101/gad.2.12a.1582 · Cited by 673 · see citing works
A Combined Chemical and Genetic Approach for the Generation of Induced Pluripotent Stem Cells
Shi, Y., Tae, J., Desponts, C., Hahm, H. S., Schöler, H. R., & Ding, S. (2008) · Cell stem cell · doi:10.1016/j.stem.2008.05.011 · Cited by 669 · see citing works
A lymphoid-specific protein binding to the octamer motif of immunoglobulin genes
Staudt, L. M., Singh, H., Sen, R., Wirth, T. C., Sharp, P. A., & Baltimore, D. (1986) · Nature · doi:10.1038/323640a0 · Cited by 658 · see citing works
Bar-Nur, O., Russ, H., Efrat, S., & Benvenisty, N. (2011) · Cell Stem Cell · doi:10.1016/j.stem.2011.06.007 · Cited by 651 · see citing works
Schöler, H. R., Hatzopoulos, A. K., Balling, R., Suzuki, N., & Gruss, P. (1989) · The EMBO Journal · doi:10.1002/j.1460-2075.1989.tb08392.x · Cited by 646 · see citing works
Pairing SOX off: with partners in the regulation of embryonic development
Kamachi, Y., Uchikawa, M., & Kondoh, H. (2000) · Trends in Genetics · doi:10.1016/s0168-9525(99)01955-1 · Cited by 641 · see citing works
Chew, J.-L., Loh, Y., Zhang, W., Chen, X., Tam, W. L., Yeap, L.-S., Li, P., Ang, Y.-S., Lim, B., Robson, P., et al. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.25.14.6031-6046.2005 · Cited by 641 · see citing works
c-Myc Is Dispensable for Direct Reprogramming of Mouse Fibroblasts
Wernig, M., Meissner, A., Cassady, J. P., & Jaenisch, R. (2008) · Cell stem cell · doi:10.1016/j.stem.2007.12.001 · Cited by 627 · see citing works
Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons
Wapinski, O. L., Vierbuchen, T., Qu, K., Lee, Q. Y., Chanda, S., Fuentes, D. R., Giresi, P. G., Ng, Y. H., Marro, S., Neff, N. F., et al. (2013) · Cell · doi:10.1016/j.cell.2013.09.028 · Cited by 627 · see citing works
An Atomic Model of the Interferon-β Enhanceosome
Panne, D., Maniatis, T., & Harrison, S. C. (2007) · Cell · doi:10.1016/j.cell.2007.05.019 · Cited by 625 · see citing works
Conversion of mouse fibroblasts into cardiomyocytes using a direct reprogramming strategy
Efe, J. A., Hilcove, S. A., Kim, J., Zhou, H., Ouyang, K., Wang, G., Chen, J., & Ding, S. (2011) · Nature Cell Biology · doi:10.1038/ncb2164 · Cited by 618 · see citing works
Cryo-EM Study of the Chromatin Fiber Reveals a Double Helix Twisted by Tetranucleosomal Units
Song, F., Chen, P., Sun, D., Wang, M., Dong, L., Liang, D., Xu, R.-M., Zhu, P., & Li, G. (2014) · Science · doi:10.1126/science.1251413 · Cited by 617 · see citing works
Generation of human induced pluripotent stem cells from urine samples
Zhou, T., Benda, C., Dunzinger, S., Huang, Y., Ho, J. C., Yang, J., Wang, Y., Zhang, Y., Zhuang, Q., Li, Y., et al. (2012) · Nature Protocols · doi:10.1038/nprot.2012.115 · Cited by 614 · see citing works
Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
Chen, J., Zhang, Z., Li, L., Chen, B.-C., Revyakin, A., Hajj, B., Legant, W., Dahan, M., Lionnet, T., Betzig, E., et al. (2014) · Cell · doi:10.1016/j.cell.2014.01.062 · Cited by 602 · see citing works
Hepatic specification of the gut endoderm in vitro: cell signaling and transcriptional control.Preprint
Gualdi, R., Bossard, P., Zheng, M., Hamada, Y., Coleman, J. R., & Zaret, K. S. (1996) · Genes & Development · doi:10.1101/gad.10.13.1670 · Cited by 590 · see citing works
Direct reprogramming of mouse fibroblasts to neural progenitors
Kim, J., Efe, J. A., Zhu, S., Talantova, M. V., Xu, Y., Wang, S., Lipton, S. A., Zhang, K., & Ding, S. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1103113108 · Cited by 568 · see citing works
A High-Efficiency System for the Generation and Study of Human Induced Pluripotent Stem Cells
Maherali, N., Ahfeldt, T., Rigamonti, A., Utikal, J., Cowan, C., & Hochedlinger, K. (2008) · Cell Stem Cell · doi:10.1016/j.stem.2008.08.003 · Cited by 563 · see citing works
DNA-dependent formation of transcription factor pairs alters their binding specificity
Jolma, A., Yin, Y., Nitta, K. R., Dave, K., Popov, A. N., Taipale, M., Enge, M., Kivioja, T., Morgunova, E. Y., & Taipale, J. (2015) · Nature · doi:10.1038/nature15518 · Cited by 555 · see citing works
Cooperative Binding of Transcription Factors Orchestrates Reprogramming
Chronis, C., Fiziev, P., Papp, B., Butz, S., Bonora, G., Sabri, S., Ernst, J., & Plath, K. (2017) · Cell · doi:10.1016/j.cell.2016.12.016 · Cited by 555 · see citing works
Ang, Y.-S., Tsai, S., Lee, D., Monk, J. M., Su, J., Ratnakumar, K., Ding, J., Ge, Y., Darr, H., Chang, B., et al. (2011) · Cell · doi:10.1016/j.cell.2011.03.003 · Cited by 545 · see citing works
An Oct4-Centered Protein Interaction Network in Embryonic Stem Cells
van den Berg, D. L. C., Snoek, T., Mullin, N. P., Yates, A., Bezstarosti, K., Demmers, J., Chambers, I., & Poot, R. A. (2010) · Cell Stem Cell · doi:10.1016/j.stem.2010.02.014 · Cited by 542 · see citing works
Structure of the 5' ends of immunoglobulin genes: a novel conserved sequence.
Parslow, T. G., Blair, D. L., Murphy, W. J., & Granner, D. K. (1984) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.81.9.2650 · Cited by 529 · see citing works
Generation of induced pluripotent stem cells from human cord blood.
Haase, A., Olmer, R., Schwanke, K., Wunderlich, S., Merkert, S., Hess, C., Zweigerdt, R., Gruh, I., Meyer, J., Wagner, S., et al. (2009) · Cell Stem Cell · doi:10.1016/j.stem.2009.08.021 · Cited by 520 · see citing works
Direct Reprogramming of Fibroblasts into Neural Stem Cells by Defined Factors
Han, D., Tàpia, N., Hermann, A., Hemmer, K., Höing, S., Araúzo-Bravo, M. J., Zaehres, H., Wu, G., Frank, S., Moritz, S., et al. (2012) · Cell stem cell · doi:10.1016/j.stem.2012.02.021 · Cited by 514 · see citing works
Klemm, J. D., Rould, M. A., Aurora, R., Herr, W., & Pabo, C. O. (1994) · Cell · doi:10.1016/0092-8674(94)90231-3 · Cited by 506 · see citing works
Octamer and Sox Elements Are Required for Transcriptional cis Regulation of Nanog Gene Expression
Kuroda, T., Tada, M., Kubota, H., Kimura, H., Hatano, S.-Y., Suemori, H., Nakatsuji, N., & Tada, T. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.25.6.2475-2485.2005 · Cited by 490 · see citing works
Fletcher, C., Heintz, N., & Roeder, R. G. (1987) · Cell · doi:10.1016/0092-8674(87)90100-0 · Cited by 487 · see citing works
Direct Conversion of Fibroblasts into Stably Expandable Neural Stem Cells
Thier, M. C., Wörsdörfer, P., Lakes, Y. B., Gorris, R., Herms, S., Opitz, T., Seiferling, D., Quandel, T., Hoffmann, P., Nöthen, M. M., et al. (2012) · Cell stem cell · doi:10.1016/j.stem.2012.03.003 · Cited by 485 · see citing works
POU domain family values: flexibility, partnerships, and developmental codes.Preprint
Ryan, A. K., & Rosenfeld, M. G. (1997) · Genes & Development · doi:10.1101/gad.11.10.1207 · Cited by 482 · see citing works
Direct Reprogramming of Adult Human Fibroblasts to Functional Neurons under Defined Conditions
Ambasudhan, R., Talantova, M. V., Coleman, R., Xu, Y., Zhu, S., Lipton, S. A., & Ding, S. (2011) · Cell stem cell · doi:10.1016/j.stem.2011.07.002 · Cited by 480 · see citing works
Reprogramming of fibroblasts into induced pluripotent stem cells with orphan nuclear receptor Esrrb
Feng, B., Jiang, J., Kraus, P., Ng, J.-H., Heng, J.-C. D., Chan, Y.-S., Yaw, L. P., Zhang, W., Loh, Y., Han, J., et al. (2009) · Nature Cell Biology · doi:10.1038/ncb1827 · Cited by 472 · see citing works
Two Supporting Factors Greatly Improve the Efficiency of Human iPSC Generation
Zhao, Y., Yin, X., Qin, H., Zhu, F., Liu, H., Yang, W., Zhang, Q., Xiang, C., Hou, P., Song, Z., et al. (2008) · Cell Stem Cell · doi:10.1016/j.stem.2008.10.002 · Cited by 468 · see citing works
Werner, M. H., Huth, J. R., Gronenborn, A. M., & Clore, G. M. (1995) · Cell · doi:10.1016/0092-8674(95)90532-4 · Cited by 464 · see citing works
Müller, M. M., Ruppert, S., Schaffner, W., & Matthias, P. (1988) · Nature · doi:10.1038/336544a0 · Cited by 462 · see citing works
POU-domain transcription factors: pou-er-ful developmental regulators.Preprint
Rosenfeld, M. G. (1991) · Genes & Development · doi:10.1101/gad.5.6.897 · Cited by 456 · see citing works
Classification and nomenclature of all human homeobox genes
Holland, P. W., Booth, H. A. F., & Bruford, E. A. (2007) · BMC Biology · doi:10.1186/1741-7007-5-47 · Cited by 443 · see citing works
Eminli, S., Foudi, A., Stadtfeld, M., Maherali, N., Ahfeldt, T., Mostoslavsky, G., Hock, H. R., & Hochedlinger, K. (2009) · Nature Genetics · doi:10.1038/ng.428 · Cited by 438 · see citing works
Direct conversion of mouse fibroblasts to self-renewing, tripotent neural precursor cells
Lujan, E., Chanda, S., Ahlenius, H., Südhof, T. C., & Wernig, M. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1121003109 · Cited by 421 · see citing works
The B-cell-specific Oct-2 protein contains POU box- and homeo box-type domains.Preprint
Clerc, R. G., Corcoran, L. M., LeBowitz, J. H., Baltimore, D., & Sharp, P. A. (1988) · Genes & Development · doi:10.1101/gad.2.12a.1570 · Cited by 409 · see citing works
Generation of Induced Pluripotent Stem Cells from Human Cord Blood Using OCT4 and SOX2
Giorgetti, A., Montserrat, N., Aasen, T., Gonzãlez, F., Rodríguez‐Pizà, I., Vassena, R., Raya, Á., Boué, S., Barrero, M. J., Arán, B., et al. (2009) · Cell stem cell · doi:10.1016/j.stem.2009.09.008 · Cited by 407 · see citing works
Reményi, A., Lins, K., Nissen, L. J., Reinbold, R. A., Schöler, H. R., & Wilmanns, M. (2003) · Genes & Development · doi:10.1101/gad.269303 · Cited by 392 · see citing works
Direct reprogramming of somatic cells is promoted by maternal transcription factor Glis1
Maekawa, M., Yamaguchi, K., Nakamura, T., Shibukawa, R., Kodanaka, I., Ichisaka, T., Kawamura, Y., Mochizuki, H., Goshima, N., & Yamanaka, S. (2011) · Nature · doi:10.1038/nature10106 · Cited by 388 · see citing works
Herr, W., & Cleary, M. A. (1995) · Genes & Development · doi:10.1101/gad.9.14.1679 · Cited by 388 · see citing works
Oct-3/4 and Sox2 Regulate Oct-3/4 Gene in Embryonic Stem Cells
Okumura-Nakanishi, S., Saito, M., Niwa, H., & Ishikawa, F. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m410015200 · Cited by 387 · see citing works
Scheidereit, C., Heguy, A., & Roeder, R. G. (1987) · Cell · doi:10.1016/0092-8674(87)90101-2 · Cited by 384 · see citing works
Binding of the winged‐helix transcription factor HNF3 to a linker histone site on the nucleosome
Cirillo, L. A., McPherson, C. E., Bossard, P., Stevens, K., Cherian, S., Shim, E. Y., Clark, K., Burley, S. K., & Zaret, K. S. (1998) · The EMBO Journal · doi:10.1093/emboj/17.1.244 · Cited by 381 · see citing works
An Expanded Oct4 Interaction Network: Implications for Stem Cell Biology, Development, and Disease
Pardo, M., Lang, B., Yu, L., Prosser, H., Bradley, A., Babu, M. M., & Choudhary, J. (2010) · Cell Stem Cell · doi:10.1016/j.stem.2010.03.004 · Cited by 379 · see citing works
Octamania: The POU factors in murine development
Schöler, H. R. (1991) · Trends in Genetics · doi:10.1016/0168-9525(91)90422-m · Cited by 372 · see citing works
Nishimoto, M., Fukushima, A., Okuda, A., & Muramatsu, M. (1999) · Molecular and Cellular Biology · doi:10.1128/mcb.19.8.5453 · Cited by 368 · see citing works
Ambrosetti, D. C., Basilico, C., & Dailey, L. (1997) · Molecular and Cellular Biology · doi:10.1128/mcb.17.11.6321 · Cited by 368 · see citing works
Reprogramming Factor Expression Initiates Widespread Targeted Chromatin Remodeling
Koche, R. P., Smith, Z. D., Adli, M., Gu, H., Ku, M., Gnirke, A., Bernstein, B., & Meissner, A. (2011) · Cell stem cell · doi:10.1016/j.stem.2010.12.001 · Cited by 367 · see citing works
Lyssiotis, C. A., Foreman, R. K., Staerk, J., Garcia, M. E., Mathur, D., Markoulaki, S., Hanna, J. H., Lairson, L. L., Charette, B. D., Bouchez, L. C., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0903860106 · Cited by 367 · see citing works
Generation of iPSCs from mouse fibroblasts with a single gene, Oct4, and small molecules
Li, Y., Zhang, Q., Yin, X., Yang, W., Du, Y., Hou, P., Ge, J., Liu, C., Zhang, W., Zhang, X., et al. (2010) · Cell Research · doi:10.1038/cr.2010.142 · Cited by 365 · see citing works
Scheidereit, C., Cromlish, J. A., Gerster, T., Kawakami, K., Balmaceda, C.-G., Currie, R. A., & Roeder, R. G. (1988) · Nature · doi:10.1038/336551a0 · Cited by 364 · see citing works
Tgfβ Signal Inhibition Cooperates in the Induction of iPSCs and Replaces Sox2 and cMyc
Maherali, N., & Hochedlinger, K. (2009) · Current Biology · doi:10.1016/j.cub.2009.08.025 · Cited by 348 · see citing works
Utikal, J., Maherali, N., Kulalert, W., & Hochedlinger, K. (2009) · Journal of Cell Science · doi:10.1242/jcs.054783 · Cited by 348 · see citing works
The H3K27 demethylase Utx regulates somatic and germ cell epigenetic reprogramming
Mansour, A. A., Gafni, O., Weinberger, L., Zviran, A., Ayyash, M., Rais, Y., Krupalnik, V., Zerbib, M., Amann‐Zalcenstein, D., Maza, I., et al. (2012) · Nature · doi:10.1038/nature11272 · Cited by 344 · see citing works
Direct Lineage Conversion of Terminally Differentiated Hepatocytes to Functional Neurons
Marro, S. G., Pang, Z. P., Yang, N., Tsai, M.-C., Qu, K., Chang, H. Y., Südhof, T. C., & Wernig, M. (2011) · Cell stem cell · doi:10.1016/j.stem.2011.09.002 · Cited by 343 · see citing works
iPS Cells Reprogrammed From Human Mesenchymal-Like Stem/Progenitor Cells of Dental Tissue Origin
Yan, X., Qin, H., Qu, C., Tuan, R. S., Shi, S., & Huang, G. T. ‐. (2009) · Stem Cells and Development · doi:10.1089/scd.2009.0314 · Cited by 341 · see citing works
Pioneer transcription factors, chromatin dynamics, and cell fate control
Zaret, K. S., & Mango, S. E. (2016) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2015.12.003 · Cited by 337 · see citing works
Finney, M., Ruvkun, G., & Horvitz, H. R. (1988) · Cell · doi:10.1016/0092-8674(88)90132-8 · Cited by 332 · see citing works
Jang, H., Kim, T. W., Yoon, S., Choi, S., Kang, T.-W., Kim, S., Kwon, Y., Cho, E., & Youn, H. (2012) · Cell stem cell · doi:10.1016/j.stem.2012.03.001 · Cited by 318 · see citing works
Botquin, V., Hess, H., Fuhrmann, G., Anastassiadis, K., Gross, M. K., Vriend, G., & Schöler, H. R. (1998) · Genes & Development · doi:10.1101/gad.12.13.2073 · Cited by 314 · see citing works
DNA-dependent formation of transcription factor pairs alters their binding specificity
Jolma, A., Yin, Y., Nitta, K. R., Dave, K., Popov, A. N., Taipale, M., Enge, M., Kivioja, T., Morgunova, E. Y., & Taipale, J. (2016) · Nature · doi:10.1038/nature18912 · Cited by 314 · see citing works
Identification of Sox-2 regulatory region which is under the control of Oct-3/4-Sox-2 complex
Tomioka, M. (2002) · Nucleic Acids Research · doi:10.1093/nar/gkf435 · Cited by 307 · see citing works
Matching SOX: partner proteins and co-factors of the SOX family of transcriptional regulators
Wilson, M. J., & Koopman, P. A. (2002) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(02)00323-4 · Cited by 307 · see citing works
Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1
Bednář, J., Garcia-Saez, I., Boopathi, R., Cutter, A. R., Pápai, G., Reymer, A., Syed, S. H., Lone, I. N., Tonchev, O., Crucifix, C., et al. (2017) · Molecular Cell · doi:10.1016/j.molcel.2017.04.012 · Cited by 297 · see citing works
Interaction of cell-type-specific nuclear proteins with immunoglobulin VH promoter region sequences
Landolfi, N. F., Capra, J. D., & Tucker, P. W. (1986) · Nature · doi:10.1038/323548a0 · Cited by 293 · see citing works
Kim, S., Broströmer, E., Xing, D., Jin, J., Chong, S., Ge, H., Wang, S. S., Gu, C., Yang, L., Gao, Y. Q., et al. (2013) · Science · doi:10.1126/science.1229223 · Cited by 293 · see citing works
SCIP: A glial POU domain gene regulated by cyclic AMP
Monuki, E. S., Weinmaster, G., Kuhn, R., & Lemke, G. (1989) · Neuron · doi:10.1016/0896-6273(89)90247-x · Cited by 292 · see citing works
Cloning of a Lymphoid-Specific cDNA Encoding a Protein Binding the Regulatory Octamer DNA Motif
Staudt, L. M., Clerc, R. G., Singh, H., LeBowitz, J. H., Sharp, P. A., & Baltimore, D. (1988) · Science · doi:10.1126/science.3399892 · Cited by 289 · see citing works
OCT4 Spliced Variants Are Differentially Expressed in Human Pluripotent and Nonpluripotent Cells
Atlasi, Y., Mowla, S. J., Ziaee, S. A. M., Gokhale, P. J., & Andrews, P. W. (2008) · Stem Cells · doi:10.1634/stemcells.2008-0530 · Cited by 287 · see citing works
Takeda, J., Seino, S., & Bell, G. I. (1992) · Nucleic Acids Research · doi:10.1093/nar/20.17.4613 · Cited by 286 · see citing works
Schonemann, M. D., Ryan, A. K., McEvilly, R. J., O’Connell, S. M., Arias, C., Kalla, K. A., Li, P., Sawchenko, P. E., & Rosenfeld, M. G. (1995) · Genes & Development · doi:10.1101/gad.9.24.3122 · Cited by 283 · see citing works
POU domain transcription factors
Verrijzer, C. P., & van der Vliet, P. C. (1993) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/0167-4781(93)90237-8 · Cited by 281 · see citing works
Interplay of SOX and POU Factors in Regulation of the Nestin Gene in Neural Primordial Cells
Tanaka, S., Kamachi, Y., Tanouchi, A., Hamada, H., Jing, N., & Kondoh, H. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.20.8834-8846.2004 · Cited by 277 · see citing works
Tokuzawa, Y., Kaiho, E., Maruyama, M., Takahashi, K., Mitsui, K., Maeda, M., Niwa, H., & Yamanaka, S. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.8.2699-2708.2003 · Cited by 269 · see citing works
The DNA binding specificity of the bipartite POU domain and its subdomains.
Verrijzer, C. P., Alkema, M. J., van Weperen, W. W., van Leeuwen, H. C., Strating, M., & van der Vliet, P. C. (1992) · The EMBO Journal · doi:10.1002/j.1460-2075.1992.tb05606.x · Cited by 266 · see citing works
Mouse liver repopulation with hepatocytes generated from human fibroblasts
Zhu, S.-Y., Rezvani, M., Harbell, J., Mattis, A. N., Wolfe, A., Benet, L., Willenbring, H., & Ding, S. (2014) · Nature · doi:10.1038/nature13020 · Cited by 266 · see citing works
中井, 茂., Kawano, H., Yudate, T., Nishi, M., Kuno, J., Nagata, A., Jishage, K., Hamada, H., Fujii, H., & Kawamura, K. (1995) · Genes & Development · doi:10.1101/gad.9.24.3109 · Cited by 263 · see citing works
POU-domain proteins: structure and function of developmental regulators
Wegner, M., Drolet, D. W., & Rosenfeld, M. G. (1993) · Current Opinion in Cell Biology · doi:10.1016/0955-0674(93)90015-i · Cited by 258 · see citing works
The Human OCT-4 Isoforms Differ in Their Ability to Confer Self-renewal
Lee, J., Kim, H., Rho, J.-Y., Han, Y., & Kim, J. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m603937200 · Cited by 257 · see citing works
Nucleosome–Chd1 structure and implications for chromatin remodelling
Farnung, L., Vos, S. M., Wigge, C., & Cramer, P. (2017) · Nature · doi:10.1038/nature24046 · Cited by 257 · see citing works
Pruijn, G. J. M., van Driel, W., & van der Vliet, P. C. (1986) · Nature · doi:10.1038/322656a0 · Cited by 256 · see citing works
Chromatin Accessibility Dynamics during iPSC Reprogramming
Li, D., Liu, J., Yang, X., Zhou, C., Guo, J., Wu, C., Qin, Y., Guo, L., He, J., Yu, S., et al. (2017) · Cell Stem Cell · doi:10.1016/j.stem.2017.10.012 · Cited by 251 · see citing works
Generation of Endoderm-Derived Human Induced Pluripotent Stem Cells From Primary Hepatocytes
Liu, H., Ye, Z., Kim, Y., Sharkis, S. J., & Jang, Y.-Y. (2010) · Hepatology · doi:10.1002/hep.23626 · Cited by 247 · see citing works
Klf4 Cooperates with Oct3/4 and Sox2 To Activate the Lefty1 Core Promoter in Embryonic Stem Cells
Nakatake, Y., Fukui, N., Iwamatsu, Y., Masui, S., Takahashi, K., Yagi, R., Yagi, K., Miyazaki, J., Matoba, R., Ko, M. S. H., et al. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.00468-06 · Cited by 247 · see citing works
Allosteric Effects of Pit-1 DNA Sites on Long-Term Repression in Cell Type Specification
Scully, K. M., Jacobson, E. M., Jepsen, K., Lunyak, V. V., Viadiu, H., Carrière, C., Rose, D. W., Hooshmand, F., Aggarwal, A. K., & Rosenfeld, M. G. (2000) · Science · doi:10.1126/science.290.5494.1127 · Cited by 244 · see citing works
Oct‐6: a POU transcription factor expressed in embryonal stem cells and in the developing brain.
Suzuki, N., Rohdewohld, H., Neuman, T., Gruss, P., & Schöler, H. R. (1990) · The EMBO Journal · doi:10.1002/j.1460-2075.1990.tb07585.x · Cited by 239 · see citing works
Mitotic Phosphorylation of the Oct-1 Homeodomain and Regulation of Oct-1 DNA Binding Activity
Segil, N., Roberts, S. B., & Heintz, N. (1991) · Science · doi:10.1126/science.1684878 · Cited by 238 · see citing works
Cooperative Function of POU Proteins and SOX Proteins in Glial Cells
Kuhlbrodt, K., Herbarth, B., Sock, E., Enderich, J., Hermans‐Borgmeyer, I., & Wegner, M. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.26.16050 · Cited by 230 · see citing works
The virtuoso of versatility: POU proteins that flex to fit 1 1Edited by P. Wright
Phillips, K. L., & Luisi, B. F. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.4107 · Cited by 229 · see citing works
Ko, H. S., Fast, P., McBride, W. O., & Staudt, L. M. (1988) · Cell · doi:10.1016/0092-8674(88)90016-5 · Cited by 221 · see citing works
Sturm, R. A., Baumruker, T., Franza, B. R., & Herr, W. (1987) · Genes & Development · doi:10.1101/gad.1.10.1147 · Cited by 220 · see citing works
Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomesPreprint
Caravaca, J. M., Donahue, G., Becker, J. S., He, X., Charles, V., & Zaret, K. S. (2013) · Genes & Development · doi:10.1101/gad.206458.112 · Cited by 218 · see citing works
Bella, F. L., Sive, H. L., Roeder, R. G., & Heintz, N. (1988) · Genes & Development · doi:10.1101/gad.2.1.32 · Cited by 216 · see citing works
Carbon, P., Murgo, S., Ebel, J., Krol, A., Tebb, G., & Mattaj, I. W. (1987) · Cell · doi:10.1016/0092-8674(87)90011-0 · Cited by 215 · see citing works
Brn-3b: a POU domain gene expressed in a subset of retinal ganglion cells
Xiang, M., Zhou, L., Peng, Y., Eddy, R. L., Shows, T. B., & Nathans, J. (1993) · Neuron · doi:10.1016/0896-6273(93)90079-7 · Cited by 207 · see citing works
Skn-1a (Pou2f3) specifies taste receptor cell lineage
Matsumoto, I., Ohmoto, M., Narukawa, M., Yoshihara, Y., & Abe, K. (2011) · Nature Neuroscience · doi:10.1038/nn.2820 · Cited by 206 · see citing works
Structure of Pit-1 POU domain bound to DNA as a dimer: unexpected arrangement and flexibility.Preprint
Jacobson, E. M., Li, P., León‐Del‐Río, A., Rosenfeld, M. G., & Aggarwal, A. K. (1997) · Genes & Development · doi:10.1101/gad.11.2.198 · Cited by 206 · see citing works
Lodato, M. A., Ng, C., Wamstad, J. A., Cheng, A. W., Thai, K. K., Fraenkel, E., Jaenisch, R., & Boyer, L. A. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003288 · Cited by 196 · see citing works
Oct4 switches partnering from Sox2 to Sox17 to reinterpret the enhancer code and specify endoderm
Aksoy, I., Jauch, R., Chen, J., Dyla, M., Divakar, U., Bogu, G. K., Teo, R., Ng, C. K. L., Herath, W. B., Li-li, S., et al. (2013) · The EMBO Journal · doi:10.1038/emboj.2013.31 · Cited by 194 · see citing works
Self-citationLin, Y., Yang, Y., Li, W., Chen, Q., Li, J., Pan, X., Zhou, L., Liu, C., Chen, C., He, J., et al. (2012) · Molecular Cell · doi:10.1016/j.molcel.2012.08.030 · Cited by 190 · see citing works
Gerrero, M. R., McEvilly, R. J., Turner, E. E., Lin, C. R., O’Connell, S. M., Jenné, K. J., Hobbs, M. V., & Rosenfeld, M. G. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.22.10841 · Cited by 190 · see citing works
Sumoylation of Oct4 Enhances Its Stability, DNA Binding, and Transactivation
Wei, F., Schöler, H. R., & Atchison, M. L. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m611041200 · Cited by 180 · see citing works
Human and mouse adipose-derived cells support feeder-independent induction of pluripotent stem cells
Sugii, S., Kida, Y. S., Kawamura, T., Suzuki, J., Vassena, R., Yin, Y.-Q., Lutz, M. K., Berggren, W. T., Belmonte, J. C. I., & Evans, R. M. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0910172106 · Cited by 179 · see citing works
Small Molecules Enable Cardiac Reprogramming of Mouse Fibroblasts with a Single Factor, Oct4
Wang, H., Cao, N., Spencer, C. I., Nie, B., Ma, T., Xu, T., Zhang, Y., Wang, X., Srivastava, D., & Ding, S. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.01.038 · Cited by 166 · see citing works
Repression of the IgH Enhancer in Teratocarcinoma Cells Associated with a Novel Octamer Factor
Lenardo, M. J., Staudt, L. M., Robbins, P., Kuang, A. A., Mulligan, R. C., & Baltimore, D. (1989) · Science · doi:10.1126/science.2536195 · Cited by 165 · see citing works
Williams, D. C., Cai, M., & Clore, G. M. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m309790200 · Cited by 164 · see citing works
Schreiber, E. H., Harshman, K., Kemler, I., Malipiero, U., Schaffner, W., & Fontana, A. (1990) · Nucleic Acids Research · doi:10.1093/nar/18.18.5495 · Cited by 163 · see citing works
Turner, E. E., Jenné, K. J., & Rosenfeld, M. G. (1994) · Neuron · doi:10.1016/0896-6273(94)90164-3 · Cited by 162 · see citing works
Oct4 links multiple epigenetic pathways to the pluripotency network
Ding, J., Xu, H., Faiola, F., Ma'ayan, A., & Wang, J. (2012) · Cell Research · doi:10.1038/cr.2011.179 · Cited by 162 · see citing works
Catena, R., Tiveron, C., Ronchi, A. E., Porta, S., Ferri, L., Tatangelo, L., Cavallaro, M., Favaro, R., Ottolenghi, S., Reinbold, R. A., et al. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m405514200 · Cited by 160 · see citing works
A unique Oct4 interface is crucial for reprogramming to pluripotency
Esch, D., Vahokoski, J., Groves, M. R., Pogenberg, V., Cojocaru, V., Bruch, H. V., Han, D., Drexler, H. C. A., Araúzo-Bravo, M. J., Ng, C. K. L., et al. (2013) · Nature Cell Biology · doi:10.1038/ncb2680 · Cited by 156 · see citing works
Self-citationOCT4: Dynamic DNA binding pioneers stem cell pluripotency
Jerabek, S., Merino, F., Schöler, H. R., & Cojocaru, V. (2013) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2013.10.001 · Cited by 155 · see citing works
Roles of Sall4 in the generation of pluripotent stem cells from blastocysts and fibroblasts
Tsubooka, N., Ichisaka, T., Okita, K., Takahashi, K., Nakagawa, M., & Yamanaka, S. (2009) · Genes to Cells · doi:10.1111/j.1365-2443.2009.01301.x · Cited by 154 · see citing works
Mathis, J. M., Simmons, D. M., He, X., Swanson, L. W., & Rosenfeld, M. G. (1992) · The EMBO Journal · doi:10.1002/j.1460-2075.1992.tb05320.x · Cited by 154 · see citing works
Oct transcription factors in development and stem cells: insights and mechanisms
Tantin, D. R. (2013) · Development · doi:10.1242/dev.095927 · Cited by 148 · see citing works
Chen, J., Liu, J., Yang, J., Chen, Y., Chen, J., Ni, S., Song, H., Zeng, L., Ding, K., & Pei, D. (2010) · Cell Research · doi:10.1038/cr.2010.172 · Cited by 145 · see citing works
Solution structure of the POU-specific DNA-binding domain of Oct-1
Dekker, N., Cox, M., Boelens, R., Verrijzer, C. P., van der Vliet, P. C., & Kaptein, R. (1993) · Nature · doi:10.1038/362852a0 · Cited by 145 · see citing works
Oct4 and Klf4 Reprogram Dermal Papilla Cells into Induced Pluripotent Stem Cells
Tsai, S., Clavel, C., Kim, S., Ang, Y.-S., Grisanti, L., Lee, D., Kelley, K. A., & Rendl, M. (2009) · Stem Cells · doi:10.1002/stem.281 · Cited by 142 · see citing works
Wwp2, an E3 Ubiquitin Ligase That Targets Transcription Factor Oct-4 for Ubiquitination
Xu, H. M., Liao, B., Zhang, Q. J., Wang, B. B., Li, H., Zhong, X. M., SHENG, H. Z., Zhao, Y., Zhao, Y., & Jin, Y. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m400516200 · Cited by 142 · see citing works
Tomilin, A. N., Reményi, A., Lins, K., Bak, H., Leidel, S. A., Vriend, G., Wilmanns, M., & Schöler, H. R. (2000) · Cell · doi:10.1016/s0092-8674(00)00189-6 · Cited by 142 · see citing works
Assa‐Munt, N. (1993) · Cell · doi:10.1016/0092-8674(93)90171-l · Cited by 138 · see citing works
Lai, J. S., Cleary, M. A., & Herr, W. (1992) · Genes & Development · doi:10.1101/gad.6.11.2058 · Cited by 135 · see citing works
Maza, I., Caspi, I., Zviran, A., Chomsky, E., Rais, Y., Viukov, S. V., Geula, S., Buenrostro, J. D., Weinberger, L., Krupalnik, V., et al. (2015) · Nature Biotechnology · doi:10.1038/nbt.3270 · Cited by 133 · see citing works
Kemler, I., Schreiber, E. H., Müller, M. M., Matthias, P., & Schaffner, W. (1989) · The EMBO Journal · doi:10.1002/j.1460-2075.1989.tb03607.x · Cited by 129 · see citing works
Post-Translational Regulation of Oct4 Transcriptional Activity
Saxe, J. P., Tomilin, A. N., Schöler, H. R., Plath, K., & Huang, J. (2009) · PLoS ONE · doi:10.1371/journal.pone.0004467 · Cited by 127 · see citing works
Knaupp, A. S., Buckberry, S., Pflueger, J., Lim, S. M., Ford, E., Larcombe, M. R., Rossello, F. J., de Mendoza, A., Alaei, S., Firas, J., et al. (2017) · Cell stem cell · doi:10.1016/j.stem.2017.11.007 · Cited by 127 · see citing works
Differential Dimer Activities of the Transcription Factor Oct-1 by DNA-Induced Interface Swapping
Reményi, A., Tomilin, A. N., Pohl, E., Lins, K., Philippsen, A., Reinbold, R. A., Schöler, H. R., & Wilmanns, M. (2001) · Molecular Cell · doi:10.1016/s1097-2765(01)00336-7 · Cited by 126 · see citing works
Exhaustive Search for Over-represented DNA Sequence Motifs with CisFinder
Sharov, A. A., & Ko, M. S. H. (2009) · DNA Research · doi:10.1093/dnares/dsp014 · Cited by 125 · see citing works
The Oct-2 protein binds cooperatively to adjacent octamer sites.Preprint
LeBowitz, J. H., Clerc, R. G., Brenowitz, M. D., & Sharp, P. A. (1989) · Genes & Development · doi:10.1101/gad.3.10.1625 · Cited by 124 · see citing works
Kang, J., Gemberling, M. P., Nakamura, M., Whitby, F. G., Handa, H., Fairbrother, W. G., & Tantin, D. R. (2009) · Genes & Development · doi:10.1101/gad.1750709 · Cited by 124 · see citing works
Conversion of Human Fibroblasts to Functional Endothelial Cells by Defined Factors
Li, J., Huang, N. F., Zou, J., Laurent, T., Lee, J. C., Okogbaa, J., Cooke, J. P., & Ding, S. (2013) · Arteriosclerosis Thrombosis and Vascular Biology · doi:10.1161/atvbaha.112.301167 · Cited by 123 · see citing works
Small Molecules Facilitate the Reprogramming of Mouse Fibroblasts into Pancreatic Lineages
Li, K., Zhu, S., Russ, H. A., Xu, S., Xu, T., Zhang, Y., Ma, T., Hebrok, M., & Ding, S. (2014) · Cell stem cell · doi:10.1016/j.stem.2014.01.006 · Cited by 121 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Yao, Z., van Velthoven, C. T. J., Kunst, M., Zhang, M., McMillen, D., Lee, C., Jung, W., Goldy, J., Abdelhak, A., Aitken, M., et al. (2023) · Nature · doi:10.1038/s41586-023-06812-z · Cited by 1,194 · see citing works
Regulation of immune responses by tuft cells
Schneider, C., O’Leary, C. E., & Locksley, R. M. (2019) · Nature reviews. Immunology · doi:10.1038/s41577-019-0176-x · Cited by 260 · see citing works
Tuft Cells—Systemically Dispersed Sensory Epithelia Integrating Immune and Neural Circuitry
O’Leary, C. E., Schneider, C., & Locksley, R. M. (2018) · Annual Review of Immunology · doi:10.1146/annurev-immunol-042718-041505 · Cited by 172 · see citing works
OCA-T1 and OCA-T2 are coactivators of POU2F3 in the tuft cell lineage
Wu, X., He, X., Ipsaro, J. J., Huang, Y., Preall, J. B., Ng, D., Shue, Y. T., Sage, J., Egeblad, M., Joshua‐Tor, L., et al. (2022) · Nature · doi:10.1038/s41586-022-04842-7 · Cited by 92 · see citing works
Malik, V., Glaser, L. V., Zimmer, D., Velychko, S., Weng, M., Holzner, M., Arend, M., Chen, Y., Srivastava, Y., Veerapandian, V., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-11054-7 · Cited by 71 · see citing works
Self-citationSherrill, H. E., Jean, P., Driver, E. C., Sanders, T. R., Fitzgerald, T. S., Moser, T., & Kelley, M. W. (2019) · Journal of Neuroscience · doi:10.1523/jneurosci.2728-18.2019 · Cited by 64 · see citing works
BRN 2, a POU erful driver of melanoma phenotype switching and metastasis
Fane, M. E., Chhabra, Y., Smith, A. G., & Sturm, R. A. (2018) · Pigment Cell & Melanoma Research · doi:10.1111/pcmr.12710 · Cited by 60 · see citing works
Building Principles for Constructing a Mammalian Blastocyst Embryo
Pfeffer, P. (2018) · Biology · doi:10.3390/biology7030041 · Cited by 49 · see citing works
Fisher, J., Verhagen, M. G., Long, Z., Moissidis, M., Yan, Y., He, C., Wang, J., Micoli, E., Alastruey, C. M., Moors, R., et al. (2023) · Neuron · doi:10.1016/j.neuron.2023.11.013 · Cited by 36 · see citing works
Biological importance of OCT transcription factors in reprogramming and development
Kim, K.-P., Han, D., Kim, J., & Schöler, H. R. (2021) · Experimental & Molecular Medicine · doi:10.1038/s12276-021-00637-4 · Cited by 38 · see citing works
Brn3/POU‐IV‐type POU homeobox genes—Paradigmatic regulators of neuronal identity across phylogeny
Leyva‐Díaz, E., Masoudi, N., Serrano‐Saiz, E., Glenwinkel, L., & Hobert, O. (2020) · Wiley Interdisciplinary Reviews Developmental Biology · doi:10.1002/wdev.374 · Cited by 34 · see citing works
Directed Evolution of Reprogramming Factors by Cell Selection and Sequencing
Veerapandian, V., Ackermann, J. O., Srivastava, Y., Malik, V., Weng, M., Yang, X., & Jauch, R. (2018) · Stem Cell Reports · doi:10.1016/j.stemcr.2018.07.002 · Cited by 29 · see citing works
Self-citationXu, L., Qin, J., Fu, W., Wang, S., Wu, Q., Zhou, X. J., Crickmore, N., Guo, Z., & Zhang, Y. (2022) · Pesticide Biochemistry and Physiology · doi:10.1016/j.pestbp.2022.105053 · Cited by 28 · see citing works
Tamassia, N., Bianchetto-Aguilera, F. M., Gasperini, S., Polletti, S., Gardiman, E., Ostuni, R., Natoli, G., & Cassatella, M. A. (2021) · Cell Reports · doi:10.1016/j.celrep.2021.109143 · Cited by 25 · see citing works
Soares, M. A. F., Soares, D. S., Teixeira, V., Heskol, A., Bressan, R. B., Pollard, S. M., Oliveira, R. A., & Castro, D. S. (2021) · Genes & Development · doi:10.1101/gad.348174.120 · Cited by 24 · see citing works
Doane, A. S., Chu, C.-S., Giammartino, D. C. D., Rivas, M. A., Hellmuth, J. C., Jiang, Y., Yusufova, N., Alonso, A., Roeder, R. G., Apostolou, E., et al. (2021) · Nature Immunology · doi:10.1038/s41590-021-01025-w · Cited by 20 · see citing works
DNA selection by the master transcription factor PU.1
Terrell, J. R., Taylor, S. J., Schneider, A. L., Lu, Y., Vernon, T. N., Xhani, S., Gumpper, R. H., Luo, M., Wilson, W. D., Steidl, U. G., et al. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.112671 · Cited by 20 · see citing works
The emergence of Sox and POU transcription factors predates the origins of animal stem cells
Gao, Y., Tan, D. S., Girbig, M., Hu, H., Zhou, X., Xie, Q., Yeung, S., Lee, K. S., Ho, S. Y., Cojocaru, V., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-54152-x · Cited by 20 · see citing works
Self-citationClinical and Molecular Aspects Associated with Defects in the Transcription Factor POU3F4: A Review
Bernardinelli, E., Huber, F., Roesch, S., & Dossena, S. (2023) · Biomedicines · doi:10.3390/biomedicines11061695 · Cited by 19 · see citing works
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · BMC Biology · doi:10.1186/s12915-021-01106-0 · Cited by 18 · see citing works
Riva, C., Hajdůšková, M., Gally, C., Suman, S. K., Ahier, A., & Jarriault, S. (2022) · Cell Reports · doi:10.1016/j.celrep.2022.111365 · Cited by 18 · see citing works
Destain, H., Prahlad, M., & Kratsios, P. (2023) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2023.07.001 · Cited by 18 · see citing works
Directed Evolution of an Enhanced POU Reprogramming Factor for Cell Fate Engineering
Tan, D., Chen, Y.-P., Gao, Y., Bednarz, A., Wei, Y., Malik, V., Ho, D., Weng, M., Ho, S. Y., Srivastava, Y., et al. (2021) · Molecular biology and evolution · doi:10.1093/molbev/msab075 · Cited by 17 · see citing works
Self-citationZou, X.-Z., Zhou, X., Feng, Y., Hao, J., Liang, B., & Jia, M.-W. (2021) · European Journal of Pharmacology · doi:10.1016/j.ejphar.2021.174222 · Cited by 17 · see citing works
Regulation of immune and tissue homeostasis by Drosophila POU factors
Tang, X., & Engström, Y. (2019) · Insect Biochemistry and Molecular Biology · doi:10.1016/j.ibmb.2019.04.003 · Cited by 13 · see citing works
Ma, Y., Sekiya, M., Kainoh, K., Matsuda, T., IWASAKI, H. O., Osaki, Y., Sugano, Y., Suzuki, H., Takeuchi, Y., Miyamoto, T., et al. (2019) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2019.12.070 · Cited by 13 · see citing works
Kind, L., Raasakka, A., Molnes, J., Aukrust, I., Bjørkhaug, L., Njølstad, P. R., Kursula, P., & Arnesen, T. (2022) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2022.101803 · Cited by 13 · see citing works
Zhu, Z., Huang, F. P., Jiang, Y., Ruan, S., Liu, M., Zhang, Y., Li, Y., Chen, J., Cui, Y., Chen, Z., et al. (2022) · Molecular Medicine · doi:10.1186/s10020-022-00576-4 · Cited by 13 · see citing works
Srivastava, Y., Tan, D. S., Malik, V., Weng, M., Javed, A., Cojocaru, V., Wu, G., Veerapandian, V., Cheung, L. W. T., & Jauch, R. (2019) · FEBS Journal · doi:10.1111/febs.15076 · Cited by 12 · see citing works
Self-citationBernardinelli, E., Roesch, S., Simoni, E., Marino, A., Rasp, G., Astolfi, L., Sarikas, A., & Dossena, S. (2022) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2022.999833 · Cited by 12 · see citing works
The homeodomain of Oct4 is a dimeric binder of methylated CpG elements
Tan, D. S., Cheung, S. L., Gao, Y., Weinbuch, M., Hu, H., Shi, L., Ti, S.-C., Hutchins, A. P., Cojocaru, V., & Jauch, R. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkac1262 · Cited by 11 · see citing works
Self-citationLi, Y., 华东师范大学上海市脑功能基因组学重点实验室, 上., Lv, Q., Zheng, G., Liu, D., Ma, J., He, G., Zhang, L., Zheng, S., Li, H., et al. (2021) · 动物学研究 · doi:10.24272/j.issn.2095-8137.2021.209 · Cited by 10 · see citing works
Yu, S., Xu, C., Zhou, S., Li, Y., Feng, W., Zhang, X., Zhong, Y., & Zhang, P. (2024) · Journal of Translational Medicine · doi:10.1186/s12967-024-05116-8 · Cited by 9 · see citing works
Copy number variants suggest different molecular pathways for the pathogenesis of bladder exstrophy
Nordenskjöld, A., Arkani, S., Pettersson, M., Winberg, J., Cao, J., Fossum, M., Anderberg, M., Barker, G., Holmdahl, G., & Lundin, J. (2022) · American Journal of Medical Genetics Part A · doi:10.1002/ajmg.a.63031 · Cited by 9 · see citing works
Bob1 maintains T follicular helper cells for long-term humoral immunity
Yanagi, M., Ikegami, I., Kamekura, R., Sato, T., Sato, T., Kamiya, S., Murayama, K., Jitsukawa, S., Ito, F., Yorozu, A., et al. (2024) · Communications Biology · doi:10.1038/s42003-024-05827-0 · Cited by 9 · see citing works
Yeremenko, N. G., Danger, R., Baeten, D., Tomilin, A. N., & Brouard, S. (2021) · Autoimmunity Reviews · doi:10.1016/j.autrev.2021.102833 · Cited by 9 · see citing works
Cell fate reprogramming through engineering of native transcription factors
Jauch, R. (2018) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2018.05.013 · Cited by 8 · see citing works
Self-citationResearch progress of the transcription factor Brn4 (Review)
Wu, Y., Zhang, X., Wang, J., Jin, G., & Zhang, X. (2020) · Molecular Medicine Reports · doi:10.3892/mmr.2020.11818 · Cited by 8 · see citing works
Barrak, M. M., Bonyadi, M. J., Hami, H. J., Ali, M. D. A., Muttair, R. Y., & Abd, R. A. (2023) · University of Thi-Qar Journal of Science · doi:10.32792/utq/utjsci/v10i2.1143 · Cited by 8 · see citing works
Yadav, R., & Srivastava, P. (2019) · Environmental Science and Pollution Research · doi:10.1007/s11356-019-06806-3 · Cited by 8 · see citing works
Li, N., Chen, S., Wang, X., Zhang, B., Zeng, B., Sun, C., Zheng, K., Chen, Q., & Wang, S. (2024) · Cancer Cell International · doi:10.1186/s12935-024-03471-6 · Cited by 7 · see citing works
Wang, Q., Yao, Y., Ma, X., Fu, B., Li, N., & Zhang, C. (2021) · Endocrinology · doi:10.1210/endocr/bqab183 · Cited by 7 · see citing works
Alexander, A. K., Rodriguez, K. F., Chen, Y., Amato, C. M., Estermann, M. A., Nicol, B., Xu, X., & Yao, H. H. (2025) · eLife · doi:10.7554/elife.96591.3 · Cited by 6 · see citing works
Kim, Y. S., & Cho, K.-O. (2020) · Scientific Reports · doi:10.1038/s41598-020-57425-9 · Cited by 6 · see citing works
Dong, Y., Zhang, P., & Fan, L. (2021) · Computational and Mathematical Methods in Medicine · doi:10.1155/2021/1840613 · Cited by 6 · see citing works
RetractedGe, B., Lin, Y., Shi, B., & Jia, Z. (2023) · Archives of Oral Biology · doi:10.1016/j.archoralbio.2023.105750 · Cited by 5 · see citing works
Zhang, L., Zhang, X., Ji, R., Ji, Y., Wu, Y., Ding, X., Shang, Z., Liu, X., Li, W., Guo, J., et al. (2023) · Stem Cells International · doi:10.1155/2023/7284986 · Cited by 4 · see citing works
The late-evolving salmon and trout join the GnRH1 club
von Schalburg, K. R., Gowen, B. E., Christensen, K. A., Ignatz, E. H., Hall, J. R., & Rise, M. L. (2023) · Histochemistry and Cell Biology · doi:10.1007/s00418-023-02227-z · Cited by 4 · see citing works
Osmosensitive transcription factors in the prolactin cell of a euryhaline teleost
Malintha, G. H. T., Celino‐Brady, F. T., Stoytcheva, Z., & Seale, A. P. (2022) · Comparative Biochemistry and Physiology Part A Molecular & Integrative Physiology · doi:10.1016/j.cbpa.2022.111356 · Cited by 4 · see citing works
Retinoic Acid and POU Genes in Developing Amphioxus: A Focus on Neural Development
Bozzo, M., Bellitto, D., Amaroli, A., Ferrando, S., Schubert, M., & Candiani, S. (2023) · Cells · doi:10.3390/cells12040614 · Cited by 4 · see citing works
Liang, C.-C., Zhai, B., Deng, W., Niu, B., Ma, J., Yao, Y., Yang, L., Liu, Y., Liu, X., & Wang, P. (2024) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2024.130642 · Cited by 4 · see citing works
Unexpected High Levels of BRN2/POU3F2 Expression in Human Dermal Melanocytic Nevi
Chitsazan, A., Lambie, D., Ferguson, B., Handoko, H. Y., Gabrielli, B. G., Walker, G. J., & Boyle, G. M. (2019) · Journal of Investigative Dermatology · doi:10.1016/j.jid.2019.12.007 · Cited by 4 · see citing works
Neural Transcription Factors in Disease Progression
Thaper, D., Vahid, S., & Zoubeidi, A. (2019) · Advances in experimental medicine and biology · doi:10.1007/978-3-030-32656-2_19 · Cited by 4 · see citing works
Alexander, A. K., Rodriguez, K. F., Chen, Y., Amato, C. M., Estermann, M. A., Xu, X. M., & Yao, H. H. (2024) · eLife · doi:10.7554/elife.96591.1 · Cited by 4 · see citing works
Alexander, A. K., Rodriguez, K. F., Chen, Y., Amato, C. M., Estermann, M. A., Nicol, B., Xu, X., & Yao, H. H. (2024) · eLife · doi:10.7554/elife.96591 · Cited by 4 · see citing works
Blanco-Carmona, E., Paassen, I., He, J., DeMartino, J., Büllesbach, A., Anderson, N., Buhl, J. L., Federico, A., Mauermann, M., Brok, M. O., et al. (2025) · Neuro-Oncology · doi:10.1093/neuonc/noaf179 · Cited by 3 · see citing works
Kulyyassov, A., & Kalendar, R. N. (2020) · Data · doi:10.3390/data5040111 · Cited by 3 · see citing works
Thaper, D., Munuganti, R. S. N., Aguda, A. H., Kim, S., Ku, S., Sivak, O., Kumar, S., Vahid, S., Ganguli, D., Beltran, H., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.05.04.490172 · Cited by 3 · see citing works
Nazarov, I. B., Zilov, D., Gordeev, M. N., Potapenko, E. V., Yeremenko, N. G., & Tomilin, A. N. (2024) · Biomolecules · doi:10.3390/biom14010123 · Cited by 1 · see citing works
Tronko, M. D., Pushkarev, V. M., Kovzun, О. I., SOKOLOVA, L. K., & PUSHKAREV, V. V. (2022) · Endokrynologia · doi:10.31793/1680-1466.2022.27-4.325 · Cited by 1 · see citing works
Torres‐Zelada, E. F., Komori, H., Liu, H., Larson, E. D., Yang, A. W. H., Fitzpatrick, Z. A., Hughes, T. R., Rushlow, C. A., Lee, C., & Harrison, M. M. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.10.06.680768 · Cited by 1 · see citing works
Structural and biophysical characterization of HNF-1A as a tool to study MODY3 diabetes variantsPreprint
Kind, L., Raasakka, A., Molnes, J., Aukrust, I., Bjørkhaug, L., Njølstad, P. R., Kursula, P., & Arnesen, T. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.12.20.473529
Alexander, A. K., Rodriguez, K. F., Chen, Y., Amato, C. M., Estermann, M. A., Nicol, B., Xu, X., & Yao, H. H. (2025) · eLife · doi:10.7554/elife.96591.2
Coupled Heterogeneity to Dimeric Site-Specific Binding by the POU-Family Transcription Factor OCT2
Terrell, J. R., & Poon, G. M. K. (2025) · The Journal of Physical Chemistry B · doi:10.1021/acs.jpcb.4c07071
Early epigenetic priming of regeneration studied with a novel transgenic epigenetic reporterPreprint
Khor, J. M., Cisneros, I., Marvel, M., Gore, A. V., Taimatsu, K., Margolin, G., Castranova, D., Goldstein, A. E., Dale, R., & Weinstein, B. M. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.04.21.649771
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · Figshare · doi:10.6084/m9.figshare.16569856
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · Figshare · doi:10.6084/m9.figshare.16569874
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · Figshare · doi:10.6084/m9.figshare.16569868
Yu, S., Cui, X., Zhou, S., Li, Y., Feng, W., Zhang, X., Zhong, Y., & Zhang, P. (2024) · Figshare · doi:10.6084/m9.figshare.26705304
Yu, S., Cui, X., Zhou, S., Li, Y., Feng, W., Zhang, X., Zhong, Y., & Zhang, P. (2024) · Figshare · doi:10.6084/m9.figshare.26705316
Zhu, Z., Huang, F., Jiang, Y., Ruan, S., Liu, M., Zhang, Y., Li, Y., Chen, J., Cui, Y., Chen, Z., et al. (2023) · Figshare · doi:10.6084/m9.figshare.22598563
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · Figshare · doi:10.6084/m9.figshare.16569850
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · Figshare · doi:10.6084/m9.figshare.16569844
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · Figshare · doi:10.6084/m9.figshare.16569859
Yu, S., Cui, X., Zhou, S., Li, Y., Feng, W., Zhang, X., Zhong, Y., & Zhang, P. (2024) · Figshare · doi:10.6084/m9.figshare.26705313
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · Figshare · doi:10.6084/m9.figshare.16569877
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · Figshare · doi:10.6084/m9.figshare.16569871
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · Figshare · doi:10.6084/m9.figshare.16569862
Zhu, Z., Huang, F., Jiang, Y., Ruan, S., Liu, M., Zhang, Y., Li, Y., Chen, J., Cui, Y., Chen, Z., et al. (2023) · Figshare · doi:10.6084/m9.figshare.22598566
Zhu, Z., Huang, F., Jiang, Y., Ruan, S., Liu, M., Zhang, Y., Li, Y., Chen, J., Cui, Y., Chen, Z., et al. (2023) · Figshare · doi:10.6084/m9.figshare.22598569
Zhu, Z., Huang, F., Jiang, Y., Ruan, S., Liu, M., Zhang, Y., Li, Y., Chen, J., Cui, Y., Chen, Z., et al. (2023) · Figshare · doi:10.6084/m9.figshare.22598572
Yu, S., Cui, X., Zhou, S., Li, Y., Feng, W., Zhang, X., Zhong, Y., & Zhang, P. (2024) · Figshare · doi:10.6084/m9.figshare.26705310
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · Figshare · doi:10.6084/m9.figshare.16569865
Yu, S., Cui, X., Zhou, S., Li, Y., Feng, W., Zhang, X., Zhong, Y., & Zhang, P. (2024) · Figshare · doi:10.6084/m9.figshare.26705307
Yu, S., Cui, X., Zhou, S., Li, Y., Feng, W., Zhang, X., Zhong, Y., & Zhang, P. (2024) · Figshare · doi:10.6084/m9.figshare.26705322
Zhu, Z., Huang, F., Jiang, Y., Ruan, S., Liu, M., Zhang, Y., Li, Y., Chen, J., Cui, Y., Chen, Z., et al. (2023) · Figshare · doi:10.6084/m9.figshare.22598560
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · Figshare · doi:10.6084/m9.figshare.16569892
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · Figshare · doi:10.6084/m9.figshare.16569853
Zhao, Y., Lindberg, B. G., Esfahani, S. S., Tang, X., Piazza, S., & Engström, Y. (2021) · Figshare · doi:10.6084/m9.figshare.16569880
Yu, S., Cui, X., Zhou, S., Li, Y., Feng, W., Zhang, X., Zhong, Y., & Zhang, P. (2024) · Figshare · doi:10.6084/m9.figshare.26705319
Kawauchi, Y., Sasaki, S., Matsushita, A., Nakamura, H. M., Yamashita, M., Kakizawa, K., Ohba, K., Tsuriya, D., Tanaka, T., & Suda, T. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms27010119
Primate lineage specification requires suppression of Alu hypereditingPreprint
Park, E. J., Cui, Y., Levin-Ferreyra, F., Soriano, V. L., Wu, H., Lupión-Garcia, N., Sands, C. M., Pessina, P., Guerra, M. C., Botas, J., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.01.14.699349
Liu, N. N., Hu, R., Hubbard, S., Salemi, S. E., Baljinnyam, E., Pradhan, P., Smith, G., Webb, B. D., & Marro, S. G. (2026) · Stem Cell Research · doi:10.1016/j.scr.2026.103938
Fan, S., Guan, Y., Xiang, M., Hongzhe, Y., Zhang, T., Fu, J., Fei, J., Xiao, Y., & Wang, Y. (2026) · Life · doi:10.3390/life16060868
Molecular basis of UV lesion binding and repair inhibition by ETS-family transcription factors
Sivapragasam, S., Terrell, J. R., van der Vaart, A., Germann, M. W., Laughery, M. F., Everly, M. E., Adhikari, S. P., Hrdlicka, P. J., Wyrick, J. J., & Poon, G. M. K. (2026) · Nucleic Acids Research · doi:10.1093/nar/gkag711 · Cited by 1 · see citing works
Gene regulatory innovations from transposable elements in primate cerebellum development
Yamada, T., Sepp, M., Sarropoulos, I., & Kaessmann, H. (2026) · Nature Communications · doi:10.1038/s41467-026-75700-7
BRN2 in lineage plasticity: a prostate cancer-focused perspective
Seilani, F., Peng, J., Wu, M., Farahani, M. E., Wang, X., Akinyemi, A. O., & Liu, X. (2026) · Endocrinology · doi:10.1210/endocr/bqag102
- Authors
- Malik, V., Zimmer, D., & Jauch, R.
- Affiliations
- Chinese Academy of Sciences (CN)
- Corresponding author
- Jauch, Ralf
- Venue
- Cellular and Molecular Life Sciences
- Published
- 2018-01-15
- Volume
- 75
- Issue
- 9
- Pages
- 1587-1612
- ISSN
- 1420-682X (ISSN-L)
- 1420-9071
- PMC
- PMC11105716
- OpenAlex
- W2783784339
- Cited by
- 98
- References
- 277
- Citations by year
- 2026: 6 · 2025: 7 · 2024: 15 · 2023: 15 · 2022: 11 · 2021: 25 · 2020: 4 · 2019: 10 · 2018: 5
- FWCI
- 1.08
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Cellular and Molecular Life Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- The HKU Scholars Hub (University of Hong Kong) (submittedVersion)
- Funders
- Ministry of Science and Technology of the People's Republic of China (2013DFE33080, 2016YFA0100700, 2017YFA0105103)
- National Natural Science Foundation of China (31471238)
- a 100 talent award of the Chinese Academy of Sciences (2014B030301058)
- Science and Technology Planning Projects of Guangdong Province, China (2016A050503038)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Keywords
- POU transcription factors, Oct4, Brn2, Oct-6, DNA binding modes, chromatin remodeling, cellular reprogramming, pluripotency, transcription factor-DNA interaction, quaternary structure, epigenetic regulation, embryonic development
- MeSH terms
- Animals, Binding Sites, Cell Differentiation, Chromatin, Humans, Protein Binding, Transcription Factors, POU Domain Factors, Cellular Reprogramming
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review