The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension
Haarhuis, Judith H.I., van der Weide, Robin H., Blomen, Vincent A., Yáñez-Cuna, J. Omar, Amendola, Mario, van Ruiten, Marjon S., Krijger, Peter H.L., Teunissen, Hans, Medema, René H., van Steensel, Bas, Brummelkamp, Thijn R., de Wit, Elzo, Rowland, Benjamin D.·2017·Cell
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- Faculty Opinions recommendation of Genome organization drives chromosome fragility.Sherif F. El‐Khamisy · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Faculty Opinions recommendation of Transcription elongation can affect genome 3D structure.Daniel Reines · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Faculty Opinions recommendation of Human cohesin compacts DNA by loop extrusion.Giacomo Cavalli, Ivana Jerković · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Faculty Opinions recommendation of Genome organization drives chromosome fragility.Scott H. Kaufmann · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Faculty Opinions recommendation of Cohesin loss eliminates all loop domains.William James Greenleaf, Viviana I. Risca · 2017 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Faculty Opinions recommendation of Principles of Chromosome Architecture Revealed by Hi-C.Roderic Guigó · 2018 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
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- Additional file 3 of Multiple epigenetic factors co-localize with HMGN proteins in A-compartment chromatinBing He, Iris Zhu, Yuri V. Postnikov, Takashi Furusawa, Lisa M. Miller Jenkins, Ravikanth Nanduri, Michael Bustin, David Landsman · 2022 · Figshare
- Additional file 4 of Multiple epigenetic factors co-localize with HMGN proteins in A-compartment chromatinBing He, Iris Zhu, Yuri V. Postnikov, Takashi Furusawa, Lisa M. Miller Jenkins, Ravikanth Nanduri, Michael Bustin, David Landsman · 2022 · Figshare
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