The DOI matches its Crossref record; 76 of the 82 references it cites were found in a registry or an index.
Molecular Architecture of the SARS-CoV-2 Virus
Open accessPublished version of a preprint
Abstract
SARS-CoV-2 is an enveloped virus responsible for the COVID-19 pandemic. Despite recent advances in the structural elucidation of SARS-CoV-2 proteins, the detailed architecture of the intact virus remains to be unveiled. Here we report the molecular assembly of the authentic SARS-CoV-2 virus using cryoelectron tomography (cryo-ET) and subtomogram averaging (STA). Native structures of the S proteins in pre- and postfusion conformations were determined to average resolutions of 8.7-11 Å. Compositions of the N-linked glycans from the native spikes were analyzed by mass spectrometry, which revealed overall processing states of the native glycans highly similar to that of the recombinant glycoprotein glycans. The native conformation of the ribonucleoproteins (RNPs) and their higher-order assemblies were revealed. Overall, these characterizations revealed the architecture of the SARS-CoV-2 virus in exceptional detail and shed light on how the virus packs its ∼30-kb-long single-segmented RNA in the ∼80-nm-diameter lumen.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Therefore, the S protein is considered the main antigen for vaccine design.228–230”
From Advances in COVID-19 mRNA vaccine development (2022) · cites this paper as [228]
In the citing paper
“The trimeric S protein on the surface of SARS-CoV-2 plays a key role in mediating host cell invasion.”
From Advances in COVID-19 mRNA vaccine development (2022) · cites this paper as [228]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
VMD: visual molecular dynamics
Humphrey, W., Dalke, A., & Schulten, K. (1996) · Journal of Molecular Graphics · doi:10.1016/0263-7855(96)00018-5 · Cited by 66,952 · cited 1×
“PDB: 6XR8 was prepared in VMD (Humphrey et al., 1996) for the MDFF, which was performed in vacuum ll”
UCSF Chimera—A visualization system for exploratory research and analysis
Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., & Ferrin, T. E. (2004) · Journal of Computational Chemistry · doi:10.1002/jcc.20084 · Cited by 46,047 · cited 2×
“Fitting Atomic models (PDB accession code 6XR8, 6VYB, 6XRA) of the pre- and postfusion S were rigidly fitted to the corresponding densities using the Fit in Map tool (Pettersen et al., 2004).”
A pneumonia outbreak associated with a new coronavirus of probable bat origin
Zhou, P., Yang, X.-L., Wang, X.-G., Hu, B., Zhang, L., Zhang, W., Si, H.-R., Zhu, Y., Li, B., Huang, C.-L., et al. (2020) · Nature · doi:10.1038/s41586-020-2012-7 · Cited by 21,969 · cited 3×
“The causative pathogen, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a novel b-coronavirus (Lu et al., 2020; Wu et al., 2020; Zhou et al., 2020).”
Hoffmann, M., Kleine-Weber, H., Schroeder, S., Krüger, N., Herrler, T., Erichsen, S., Schiergens, T. S., Herrler, G., Wu, N.-H., Nitsche, A., et al. (2020) · Cell · doi:10.1016/j.cell.2020.02.052 · Cited by 20,286 · cited 2×
“The S protein binds to the cellular surface receptor angiotensin-converting enzyme 2 (ACE2) through the receptor binding domain (RBD), an essential step for membrane fusion (Hoffmann et al., 2020; Lan et al., 2020; Shang et al., 2020; Wang et al., 2020; Yan et al., 2020; Zhou et al., 2020).”
BackgroundSelf-citationScalable molecular dynamics with NAMD
Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kalé, L., & Schulten, K. (2005) · Journal of Computational Chemistry · doi:10.1002/jcc.20289 · Cited by 16,914 · cited 1×
“12 (Phillips et al., 2005) and the CHARMM36 force field (MacKerell et al.”
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins
MacKerell, A. D., Bashford, D., Bellott, M., Dunbrack, R. L., Evanseck, J. D., Field, M. J., Fischer, S., Gao, J., Guo, H., Ha, S., et al. (1998) · The Journal of Physical Chemistry B · doi:10.1021/jp973084f · Cited by 14,429 · cited 1×
“, 2005) and the CHARMM36 force field (MacKerell et al., 1998).”
Lu, R., Zhao, X., Li, J., Niu, P., Yang, B., Wu, H., Wang, W., Song, H., Huang, B., Zhu, N., et al. (2020) · The Lancet · doi:10.1016/s0140-6736(20)30251-8 · Cited by 11,907 · cited 2×
“The causative pathogen, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a novel b-coronavirus (Lu et al., 2020; Wu et al., 2020; Zhou et al., 2020).”
A new coronavirus associated with human respiratory disease in China
Wu, F., Zhao, S., Yu, B., Chen, Y.-M., Wang, W., Song, Z.-G., Hu, Y., Tao, Z.-W., Tian, J.-H., Pei, Y.-Y., et al. (2020) · Nature · doi:10.1038/s41586-020-2008-3 · Cited by 11,688 · cited 2×
“The causative pathogen, SARS-CoV-2, is a novel β-coronavirus (Lu et al., 2020; Wu et al., 2020; Zhou et al., 2020).”
Self-citationCryo-EM structure of the 2019-nCoV spike in the prefusion conformation
Wrapp, D., Wang, N., Corbett, K. S., Goldsmith, J. A., Hsieh, C.-L., Abiona, O., Graham, B. S., & McLellan, J. S. (2020) · Science · doi:10.1126/science.abb2507 · Cited by 8,897 · cited 12×
“Several prefusion conformations have been resolved for the S protein, where the three RBDs display distinct orientations: up or down (Walls et al., 2020; Wrapp et al., 2020).”
BackgroundInfluentialStructure, function and antigenicity of the SARS-CoV-2 spike glycoprotein
Walls, A. C., Park, Y.-J., Tortorici, M. A., Wall, A., McGuire, A. T., & Veesler, D. (2020) · doi:10.1101/2020.02.19.956581 · Cited by 8,586 · cited 12×
“Native Structures of S in the Prefusion Conformation The native structures of S in the ‘‘RBD down’’ and ‘‘one RBD up’’ conformations were similar to the rigidly fitted recombinant protein structures (PDB: 6XR8, 6VYB; Cai et al., 2020; Walls et al., 2020), except for the N terminus domain (NTD).”
Influential
Research works printed but not linked: 1
- Yao, 2020, Patient-derived mutations impact pathogenicity of SARS-CoV-2, medRxiv
Cited by
Sorted by citations
Items 901–1,000 of 1,001
Valipour, M., & Irannejad, H. (2021) · Research Square · doi:10.21203/rs.3.rs-877666/v1
Online tools to easily build augmented reality models of biomolecules that run right on the webPreprint
Rodríguez, F. C., Peraro, M. D., & Abriata, L. A. (2021) · doi:10.33774/chemrxiv-2021-bj119
Evidence for a long-range RNA-RNA interaction between ORF8 and Spike of SARS-CoV-2Preprint
Omoru, O. B., Pereira, F., Janga, S. C., & Manzourolajdad, A. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.11.09.467911
Online tools to easily build augmented reality models of biomolecules that run right on the webPreprint
Rodríguez, F. C., Peraro, M. D., & Abriata, L. A. (2021) · doi:10.33774/chemrxiv-2021-bj119-v2
Experiments And Simulations of Thermometric Lateral Flow Immunoassay For Point-of-Care TestingPreprint
Azuma, T., Hui, Y. Y., Chen, O. Y., Wang, Y., & Chang, H. (2021) · Research Square · doi:10.21203/rs.3.rs-1140710/v1
Chan, C. E.-Z., Ng, C.-G., Lim, A. P.-C., Seah, S. G. K., Chye, D. H., Wong, S. K. K., Lim, J.-H., Lim, V. Z.-Y., Lai, S.-K., Wong, P.-S., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.12.06.471528
“In non-treated cells the S protein exhibited partial 628 sensitivity to endoH cleavage suggesting that individual S protein polypeptide chains contained 629 a mixture of simple and complex glycans as described previously ([44-46].”
MethodPotential cross-protection against SARS-CoV-2 from previous exposure to bovine coronavirusPreprint
Querne, L. B. P., Bastos, F. Z., & Beirão, B. C. B. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.12.13.472476
“Regarding the ORF1ab protein,107 peptides showed good results for T or B cells (Table 3).”
BackgroundInfluentialKhedri, M., Maleki, R., Dahri, M., Sadeghi, M. M., Rezvantalab, S., Santos, H. A., & Shahbazi, M. (2021) · Research Square · doi:10.21203/rs.3.rs-637614/v1
Neuroimmunology and Neurological Manifestations of COVID-19
Weissert, R. (2022) · IntechOpen eBooks · doi:10.5772/intechopen.103026
Intragenomic rearrangements in SARS-CoV-2, other betacoronaviruses, and alphacoronavirusesPreprint
Patarca, R., & Haseltine, W. A. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.03.07.483258
Constantinescu, E. M., & Constantinescu, C.-A. (2022) · Jurnal Medical Brasovean · doi:10.31926/jmb.2021.1.5
“1126 [40] Yao H, Song Y, Chen Y, Wu N, Xu J, Sun C, et al.”
BackgroundDisinfection effect of hexadecyl pyridinium chloride on SARS-CoV-2 in vitroPreprint
Chen, K., Ma, F., Wang, Y., Zhuang, X., Zhang, X., Mao, H., & Zhang, Y. (2022) · Research Square · doi:10.21203/rs.3.rs-458096/v3
Az új típusú koronavírus nanobiofizikája
Kiss, B., Kis, Z., Pályi, B., & Kellermayer, M. (2022) · Lege Artis Medicinae · doi:10.33616/lam.32.013
Online tools to easily build augmented reality models of biomolecules that run right on the webPreprint
Rodríguez, F. C., Peraro, M. D., & Abriata, L. A. (2021) · ChemRxiv · doi:10.26434/chemrxiv-2021-bj119
Concerns Raised on Blood Group Determinants in Plasma Membrane Interaction of the SARS-CoV-2Preprint
Fiedler, K. (2021) · Preprints.org · doi:10.20944/preprints202103.0460.v3
Rapid differentiation of SARS-CoV-2 variants on a nanotechnology enhanced DNA-chipPreprint
Dai, H., Liu, Y., Yang, Y., Wang, G., Hu, R., Shao, P., Tang, J., Xu, Z., Liu, Y., Xiao, H., et al. (2022) · Research Square · doi:10.21203/rs.3.rs-1641024/v1
Louten, J. (2022) · Elsevier eBooks · doi:10.1016/b978-0-323-90565-7.00014-9
Chimeric antigen receptor engineered cells and their clinical application in infectious disease
Chen, Q., Bo, X., Hao, J., Wang, Z., & Li, B. (2022) · Clinical and Translational Discovery · doi:10.1002/ctd2.129
Functional Nanomaterials for Rapid Detection of SARS-CoV-2: a Review
Liu, Y. Z., Xunhai, Y., Bing, Z., Xiaoying, L., & Xing, C. (2022) · Journal of Inorganic Materials · doi:10.15541/jim20220384
Updates in Management of SARS-CoV-2 Infection
Flisiak, R. (2022) · MDPI eBooks · doi:10.3390/books978-3-0365-5390-0
SARS-CoV2 associated secretion of nanoLuciferase reports on virus and Virus-Like Particle productionPreprint
Gullberg, R. C., & Frydman, J. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.10.11.511764
“SARS-CoV2, however generates particles that are approximately 100-150nM in diameter (7,8), nearly three times larger than flaviviruses.”
BackgroundCurrent Status of Vaccines Developed for SARS-CoV-2 Infection: A Review
Hoyos, C. A. M., Sánchez, J. P. C., Gómez, R. F., & Vivas, M. C. (2022) · Bangladesh Journal of Infectious Diseases · doi:10.3329/bjid.v9i9.62614 · Cited by 1
Ciklodextrinek szerepe a COVID-19 elleni küzdelemben
Réti-Nagy, K. S., Bácskay, I., Vecsernyés, M., & Fenyvesi, F. (2022) · Egészségügyi Innovációs Szemle · doi:10.56626/egis.v1i1.8938
A New Vaccine Targeting the S1 of the S Protein Induce Mice Immune Response against COVID-19
Jie, Z., Lin, Y. T., Sun, W. H., Yang, W. J., Zhang, Z. Y., Weng, K., Chen, Y., Li, C., & Lin, D. (2022) · International Journal of Vaccines and Immunization · doi:10.16966/2470-9948.128
Self-citationWaring, M. S., Lo, L. J., Kohanski, M. A., Kahle, E. R., Marcus, I. M., Smith, H. E., Spiller, K. L., & Walker, S. L. (2023) · PLoS ONE · doi:10.1371/journal.pone.0272716
“05 μm was enforced, since viral containing particles of interest are larger [30].”
BackgroundVirus structures and molecular biology exchange glances
Roy, P., Veesler, D., & Rey, F. A. (2023) · Structure · doi:10.1016/j.str.2023.01.013
Possible Effect of Nano Characterization of COVID-19 on Infection and Causing Disease
Wang, S. (2023) · International Journal of Medical Nano Research · doi:10.23937/2378-3664.1410039
“That is since average size of the COVID-19 is 60~140 nm, but size of the SARS virus is 60~220 nm [14], which is smaller and lighter than the SARS virus.”
BackgroundSARS-CoV-2: Structure, Pathogenesis, and Diagnosis
Goverdhan, A. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-87539-4.00002-6
GPU Optimization of Biological Macromolecule Multi-tilt Electron Tomography Reconstruction Algorithm
Fu, Z.-A., Wan, X., & Zhang, F. (2023) · Lecture notes in computer science · doi:10.1007/978-981-99-4749-2_40
Circulation of Coronavirus Images: Helping Social Distancing?
von Wülfingen, B. B. (2023) · Berichte zur Wissenschaftsgeschichte · doi:10.1002/bewi.202200052
Imaging and Visualizing SARS-CoV-2 in a New Era for Structural Biology
Leigh, K. E., & Modis, Y. (2023) · doi:10.1201/9781003298038-46
Progress and Environmental Research Applications of Cryo-Electron Microscopy★
Yang, Y., Gong, Y., Gu, T., & Zhang, W. (2023) · 化学学报 · doi:10.6023/a23040166
Napitupulu, R., Helianti, I., Maimunah, M., Fatiningtyas, F. A., & Malik, A. (2023) · Indonesian Journal of Biotechnology · doi:10.22146/ijbiotech.83376 · Cited by 1
Monoclonal antibodies lock down SARS-CoV-2 spike
Huang, H., & Angeletti, D. (2023) · Trends in Immunology · doi:10.1016/j.it.2023.09.006
Assessing the Efficacy and Safety of African Herbal Medicine for Treatment of Diseases in Tanzania
Zekeya, N. M., Kiondo, K., Msuya, A., & Kideghesho, J. R. (2023) · Journal of Diseases and Medicinal Plants · doi:10.11648/j.jdmp.20230904.12
Visual Analysis of Research Hotspots in Yangtze River Delta Based on Citation Topic and CiteSpace
蒋, 海. (2023) · Statistics and Applications · doi:10.12677/sa.2023.125148
Nanoscale Vaccines for the Prevention of COVID-19
Iqbal, M. J., Hamdani, T., Attarwala, H. Z., & Amiji, M. M. (2023) · AAPS advances in the pharmaceutical sciences series · doi:10.1007/978-3-031-39020-3_13
Ni, T., Hou, Z., & Zhang, P. (2023) · Royal Society of Chemistry eBooks · doi:10.1039/bk9781837670154-00131
Chen, L., Fukata, Y., & Murata, K. (2023) · The Journal of Biochemistry · doi:10.1093/jb/mvad102
Kashkanova, A. D., Albrecht, D., Küppers, M., Blessing, M., & Sandoghdar, V. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.01.09.574819
Ahn, S.-Y., Kim, M., Jeong, H.-W., Yoon, W., Bang, I. S., & Lee, S.-W. (2024) · Applied Sciences · doi:10.3390/app14031265
Quantitative probability estimation of light-induced inactivation of SARS-CoV-2
Benito, J. Q., Alda, I., & Alda, J. (2024) · Scientific Reports · doi:10.1038/s41598-024-54006-y
Impact of SARS-CoV-2/COVID-19 on HIV-1-associated neurocognitive disorders
Dutta, D., Liu, J., & Xiong, H. (2024) · Elsevier eBooks · doi:10.1016/b978-0-323-99744-7.00036-5
State-of-the-Art Molecular Biophysics in Russia
Galzitskaya, O. V. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25073565
“Each virus particle of SARS-CoV-2 has 26 ± 15 spikes randomly distributed on the virion [8], which is 10 times fewer than the influenza virus [9].”
Earnest, L., Fernandez‐Ruiz, D., Edeling, M. A., Montoya, J. C., Yap, A. H. Y., Wong, C. Y., Holz, L. E., Gras, S., Cooney, J. P., Davidson, K. C., et al. (2024) · SSRN Electronic Journal · doi:10.2139/ssrn.4771359
Condensates of SARS-CoV-2 Nucleoprotein on Viral RNA and Their Small Molecule Modulators
Svetlova, J. I., Pavlova, I. I., Aralov, A. V., & Varizhuk, A. M. (2023) · Биоорганическая химия · doi:10.31857/s0132342323050081
Zhou, J., Xie, J., Xie, Z., Li, Z., Dai, Y., Zhang, Y., Bu, Y., Liu, C., Jiang, H. Y., & Li, M. (2024) · Research Square · doi:10.21203/rs.3.rs-4185973/v1
Sugrue, R. J., Tan, B. H., Lai, S. K., Chan, C. E.-Z., & Wu, Y. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.05.01.591558
Reconstruction of the real 3D shape of the SARS-CoV-2 virus
Balabdaoui, F., Wierzbicki, T., & Bao, E. (2024) · Biophysical Journal · doi:10.1016/j.bpj.2024.04.019
Chen, S., He, Z., Kanyo, J. E., Lam, T. T., Ha, G., Lindenbach, B. D., & Ha, Y. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.05.25.595913
Viren: Aufbau, Vermehrung, Zellpathologie im Wirt
Saukel, J. (2024) · Springer eBooks · doi:10.1007/978-3-662-67508-3_5
Rodà, F., Gualerzi, A., Picciolini, S., Forleo, L., Mangolini, V., Mancuso, R., Agostini, S., Rossetto, R. A., Pierucci, P., Banfi, P. I., et al. (2024) · Chemosensors · doi:10.3390/chemosensors12070136
Costa, A. L. C. (2024) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/d.17.2024.tde-11042024-103009
Wu, Y., Lai, S. K., Chan, C. E.-Z., Tan, B. H., & Sugrue, R. J. (2024) · Virology · doi:10.1016/j.virol.2024.110187
Immune Response to SARS-CoV-2 Infection
Cai, F. (2024) · BIO Web of Conferences · doi:10.1051/bioconf/202412402013
“The spike protein consists of two subparts, S1 and S2, where S1 is for binding to receptors on the surface of host cells, while S2 mediates the membrane fusion of virus and cell [9].”
BackgroundYousif, A. F., & Mahdi, A. G. (2024) · Academia Open · doi:10.21070/acopen.9.2024.9156
Xue, X., Duncan, J. D., Coleman, C. M., Contreas, L., Blackburn, C., Vivero-Lopez, M., Williams, P. M., Ball, J. K., Alexander, C., & Alexander, M. R. (2024) · Cell Reports Physical Science · doi:10.1016/j.xcrp.2024.102204
Sahoo, A., Chie, C., Muddiman, D. C., & Samal, J. (2024) · GEN Biotechnology · doi:10.1089/genbio.2024.0024
“…in diagnosis irrespective of discipline, driving biomarker discovery in Alzhiemer ’ s, 25 new characterization of the SARS-CoV-2 virus structure, 26 identi fi - cation and classi fi cation of congenital disorders of glycosylation, 27 and characterization of exosome-based diagnostics for cancer.”
Fogarty, C. A., Ives, C. M., Singh, O., & Fadda, E. (2024) · Royal Society of Chemistry eBooks · doi:10.1039/9781839166433-00315
Mapping HIV-1 RNA Structure, Homodimers, Long-Range Interactions and persistent domains by HiCapRPreprint
Zhang, Y., Han, J., Xie, D., Shen, W., Li, P., Lau, J. Y., Li, J., Li, L., Kudla, G., & Zhao, Z. (2024) · eLife · doi:10.7554/elife.102550.1
Self-citationRecounting COVID-19 associated complement-mediated coagulopathies: Triggers and controls
Lata, P., Madhuri, M., Ali, A., Kumari, B., Tiwari, M., Kumar, A., Hajela, K., Bhushan, D., & Sharma, S. (2024) · Annals of the National Academy of Medical Sciences (India) · doi:10.25259/anams_77_2024
Özyurt, V. H., Çitil, B. E., & Anık, Ü. (2024) · ChemistrySelect · doi:10.1002/slct.202405064
Sibiya, A., Vaseeharan, B., Ramasamy, P., & Bhavaniramya, S. (2024) · Coronaviruses · doi:10.2174/0126667975312229240903074835
U-73122, a phospholipase C inhibitor, impairs lymphocytic choriomeningitis virus virion infectivity
Mizuma, K., Hashizume, M., Urata, S., Shindo, K., Takashima, A., Mizuta, S., & Iwasaki, M. (2024) · Journal of General Virology · doi:10.1099/jgv.0.002060
“…of U-73122 using a series of enveloped viruses with varying glycoprotein densities, including human immunodeficiency virus 1 [53] and SARS- CoV-2 [54], as examples of low-density surface spike protein viruses, and influenza A virus [55], as an example of a high-density surface spike protein…”
Kaneda, N., Suzuki, L., Endo, S., Husna, S. M. A., Ishikawa, S., Takahashi, H., Oikawa, H., Itoh, Y., & Takahashi, S. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.01.23.634602
Mapping HIV-1 RNA Structure, Homodimers, Long-Range Interactions and persistent domains by HiCapRPreprint
Zhang, Y., Han, J., Xie, D., Shen, W., Li, P., Lau, J. Y., Li, J., Li, L., Kudla, G., & Zhao, Z. (2025) · eLife · doi:10.7554/elife.102550.2
Self-citationSingh, S., Liu, Y., Burke, M. C., Rayaprolu, V., Stein, S. E., & Hasan, S. S. (2025) · Journal of Structural Biology X · doi:10.1016/j.yjsbx.2025.100123
Allosteric modulation by the fatty acid site in the glycosylated SARS-CoV-2 spikePreprint
Oliveira, A. S. F., Kearns, F. L., Rosenfeld, M. A., Casalino, L., Tulli, L., Berger, I., Schaffitzel, C., Davidson, A. D., Amaro, R. E., & Mulholland, A. J. (2025) · eLife · doi:10.7554/elife.97313.2
Almey, R., Mwangi, K., Cae, S. D., Ramasamy, P., Hulle, M. V., Lentacker, I., Schepens, B., Deforce, D. L. D., Martens, G. A., Ramaut, P., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.03.11.642564
Alyoubi, A. A. (2025) · Intelligent Decision Technologies · doi:10.1177/18724981251318457
TGF-β inhibitor SB431542 suppresses coronavirus replication through multistep inhibitionPreprint
Verma, A., Kumar, G., Khandelwal, N., Mayer, B. E., Rathee, J., Chander, Y., Nokhwal, A., Dhanda, S., Kumar, R., Kamboj, H., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.03.20.644376
Tutorial on integrative spatiotemporal modeling by integrative modeling platform
Latham, A. P., Rožič, M., Webb, B., & Šali, A. (2025) · Protein Science · doi:10.1002/pro.70107
Cryo-ET unravels the mystery of Ad5-nCoV vaccines
Liu, C., & Ke, Z. (2025) · Structure · doi:10.1016/j.str.2025.04.006
Wang, J., Li, N., Chen, Y., Wang, J., Wang, J., Gao, C., Hu, J., & Wang, Z. (2025) · Journal of Microscopy · doi:10.1111/jmi.13432
“Moreover, at the microscopic level, both viruses are around 100 nm in diameter when viewed in the liquid phase 17 and exhibit a similar appearance when viewed under an electron microscope.”
Self-citationEltayeb, A., Rubio‐Casillas, A., Uversky, V. N., & Redwan, E. M. M. M. (2025) · Journal of Cellular Biochemistry · doi:10.1002/jcb.70038
Visualizing the Invisible: An Efficient Framework for Microscopic Visualization
Jia, H., Chen, B., & Xiang, N. (2025) · Lecture notes in computer science · doi:10.1007/978-981-95-0100-7_10
Evaluation of Serum SARS-CoV-2 Nucleocapsid Antigen as a Diagnostic Tool in COVID-19 Patients
Mahmoud, A., Hashish, M. H., Elsherif, A. A. I., & Fekry, M. M. (2025) · Journal of Pure and Applied Microbiology · doi:10.22207/jpam.19.3.24
Single-Particle Electron Microscopy Analysis of Respiratory Syncytial Virus Protein Complexes
Cao, D., Gao, Y., Chen, Z., Horgan, N. L., & Liang, B. (2025) · Methods in molecular biology · doi:10.1007/978-1-0716-4666-3_11
SARS-CoV-2 nucleocapsid protein delays cell cycle in S-phase
Liu, J., Liu, M., Yu, X., Wang, P., Guan, X., Huo, W., Zhang, J., Cui, M., Li, X., Zhou, X., et al. (2025) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2025.151671
Self-citationEvolution of a fuzzy ribonucleoprotein complex in viral assemblyPreprint
Zhao, H., Li, T., Hassan, S. A., Nguyen, A., Datta, S. A., Zhang, G., Trent, C., Czaja, A. M., Wu, D., Aronova, M. A., et al. (2025) · eLife · doi:10.7554/elife.108922.1
Evolution of a fuzzy ribonucleoprotein complex in viral assemblyPreprint
Zhao, H., Li, T., Hassan, S. A., Nguyen, A., Datta, S. A., Zhang, G., Trent, C., Czaja, A. M., Wu, D., Aronova, M. A., et al. (2025) · eLife · doi:10.7554/elife.108922
Magnetic nanoparticles as transducers for quick and direct virus detection in clinical samples
Mikelez-Alonso, I., Sánchez‐Martínez, J., Martinez-Boubeta, C., Artés-Ibáñez, E. J., Tsirov, G. K., Sanz-Muñoz, I., Cortajarena, A. L., & Terán, F. J. (2025) · Nanoscale · doi:10.1039/d5nr02153g
Ali, A., Courtney, D., Broadbent, L., Sharma, P., Bamford, C., Manzoor, S., Touzelet, O., McCaughey, C., Kirby, A., Bentley, E. G., et al. (2025) · Journal of Medical Virology · doi:10.1002/jmv.70713
“The supernatant was aliquoted and stored at − 80°C. Infectious titers were determined by plaque assay as previously described [60].”
pH-induced structural changes in SARS-CoV-2 spike variantsPreprint
Oliveira, A. S. F., Tulli, L., Kearns, F. L., Casalino, L., Rosenfeld, M. A., Berger, I., Schaffitzel, C., Davidson, A. D., Haddrell, A. E., Reid, J. P., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.11.17.688702 · Cited by 1
Evolution of a fuzzy ribonucleoprotein complex in viral assemblyPreprint
Zhao, H., Li, T., Hassan, S. A., Nguyen, A., Datta, S. A., Zhang, G., Trent, C., Czaja, A. M., Wu, D., Aronova, M. A., et al. (2025) · eLife · doi:10.7554/elife.108922.2
Cho, A. H., Cho, S. Y., Kim, S., & Lee, S. (2025) · Molecular Aspects of Medicine · doi:10.1016/j.mam.2025.101441
Yang, C.-F., Liao, C.-C., Hsu, H.-W., Liang, J.-J., Chang, C.-S., Ko, H.-Y., Chang, R.-H., Tang, W.-C., Chang, M.-H., Wang, I.-H., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26626399
Yang, C.-F., Liao, C.-C., Hsu, H.-W., Liang, J.-J., Chang, C.-S., Ko, H.-Y., Chang, R.-H., Tang, W.-C., Chang, M.-H., Wang, I.-H., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26626402
Yang, C.-F., Liao, C.-C., Hsu, H.-W., Liang, J.-J., Chang, C.-S., Ko, H.-Y., Chang, R.-H., Tang, W.-C., Chang, M.-H., Wang, I.-H., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26626405
Wang, W., Zhang, X., Yu, J., Weng, T., Yu, Z., Wu, Z., Shi, D., Zhang, S., Lu, X., Alam, O., et al. (2025) · Engineering · doi:10.1016/j.eng.2025.09.009
Self-citationβ-Coronavirus Nsp6 hijacks host ER translocation machineries into viral replication centersPreprint
Ecklund, K. H., Abrisch, R. G., Perlman, S. M., & Voeltz, G. K. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2025.12.16.694738
Metadata
- Authors
- Yao, H., Song, Y., Chen, Y., Wu, N., Xu, J., Sun, C., Zhang, J., Weng, T., Zhang, Z., Wu, Z., Cheng, L., Shi, D., Lu, X., Lei, J., Crispin, M., Shi, Y., Li, L., & Li, S.
- Affiliations
- First Affiliated Hospital Zhejiang University (CN)
- Tsinghua University (CN)
- Center for Life Sciences (CN)
- University of Southampton (GB)
- Westlake University (CN)
- Corresponding author
- Li, Lanjuan
- Li, Sai
- ORCID
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2020-10
- Volume
- 183
- Issue
- 3
- Pages
- 730-738.e13
- ISSN
- 0092-8674 (ISSN-L)
- PMC
- PMC7474903
- OpenAlex
- W3083130172
- Cited by
- 1,060
- References
- 82
- Citations by year
- 2026: 78 · 2025: 98 · 2024: 157 · 2023: 201 · 2022: 236 · 2021: 252 · 2020: 38
- FWCI
- 23.88
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- SSRN Electronic Journal (acceptedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- ePrints Soton (University of Southampton) (acceptedVersion)
- Funders
- Zhejiang University
- Topics
- Health Sciences › Medicine › Infectious Diseases › SARS-CoV-2 and COVID-19 Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Advanced Electron Microscopy Techniques and Applications
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
- Keywords
- SARS-CoV-2, spike protein, N-glycans, ribonucleoprotein, viral RNA packaging, viral assembly
- MeSH terms
- Betacoronavirus, SARS-CoV-2, Animals, Chlorocebus aethiops, Humans, Models, Molecular, Protein Conformation, Mass Spectrometry, Vero Cells, Viral Proteins, Virus Cultivation, Virus Assembly, Cryoelectron Microscopy
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review