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Elephantid Genomes Reveal the Molecular Bases of Woolly Mammoth Adaptations to the Arctic
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Reduced genetic diversity and accumulation of numerous potentially deleterious mutations may have precipitated woolly mammoth population extinction through alteration of important functions in development, reproduction, and olfaction.
“The resulting reduced genetic diversity and the accumulation of numerous potentially deleterious mutations may have precipitated the population's extinction through the alteration of important functions in development, reproduction, and olfaction [17][18][19] .”
From Ancient DNA analysis (2021) · cites this paper as [18]
The Introduction and Conclusions describe mammoth-specific genetic changes associated with Arctic adaptations, including skin and adipose development, not a genetic cause of extinction. Searches for reduced genetic diversity, deleterious mutation accumulation, reproduction, and olfaction found no passage connecting those factors to the population’s extinction in our copy. (LLM, conf=0.75)
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A method and server for predicting damaging missense mutations.
Adzhubei, I. A., Schmidt, S., Peshkin, L., Ramensky, V. E., Gerasimova, A., Bork, P., Kondrashov, A. S., & Sunyaev, S. R. (2010) · Nature Methods · doi:10.1038/nmeth0410-248 · Cited by 13,194
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
Kircher, M., Sawyer, S., & Meyer, M. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr771 · Cited by 1,106 · cited 1×
“For the two mammoth samples, we trimmed putative adaptor sequences and merged overlapping paired-end reads using available scripts (Kircher et al., 2012).”
MethodA Melanocortin 1 Receptor Allele Suggests Varying Pigmentation Among Neanderthals
Lalueza-Fox, C., Römpler, H., Caramelli, D., Stäubert, C., Catalano, G., Hughes, D., Rohland, N., Pilli, E., Longo, L., Condemi, S., et al. (2007) · Science · doi:10.1126/science.1147417 · Cited by 292 · cited 2×
“…gene (HBB/HBD) reduce oxygen affinity (Campbell et al., 2010; Yuan et al., 2013; 2011) whereas amino acid polymorphisms in both the woolly mammoth and Neandertal melanocortin 1 receptor (MC1R) genes were hypomorphic compared to the ancestral alleles (Lalueza-Fox et al., 2007; Römpler et al., 2006).”
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Metadata
- Authors
- Lynch, V. J., Bedoya-Reina, O. C., Ratan, A., Sulak, M., Drautz-Moses, D. I., Perry, G. H., Miller, W., & Schuster, S. C.
- Venue
- Cell Reports
- Publisher
- Elsevier BV
- Published
- 2015-07
- Volume
- 12
- Issue
- 2
- Pages
- 217-228
- ISSN
- 2211-1247
- Cited by
- 130
- References
- 3
- Language
- en
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