ProGen2: Exploring the boundaries of protein language models
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Items 101–200 of 496
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- Understanding language model scaling for protein fitness predictionChao Hou, Ди Лю, Aziz Zafar, Yufeng Shen · 2026 · Nature Computational Science
- A comprehensive overview of recent advances in generative models for antibodiesFanxu Meng, Na Zhou, Hu Guangchun, Ruotong Liu, Yuanyuan Zhang, Ming Jing, Qingzhen Hou · 2024 · Computational and Structural Biotechnology Journal
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- Artificial intelligence driven protein design and sustainable nanomedicine for advanced theranosticsDonya Esmaeilpour, Michael Richard Hamblin, Jianlin Cheng, Arezoo Khosravi, Jian Liu, Atefeh Zarepour, Ali Zarrabi, Mika Sillanpaa, Ehsan Nazarzadeh Zare, Jianliang Shen et al. · 2026 · Bioactive Materials
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- Programmable design of functional proteins from natural languageFengyuan Dai, Shiyang You, Yudian Zhu, Yuan Gao, Lihao Fu, Xibin Zhou, Jin Su, Chentong Wang, Yuliang Fan, Qingsong Tan et al. · 2026 · Nature
- Exploring the Protein Sequence Space with Global Generative ModelsSergio Romero‐Romero, Sebastian Lindner, Noelia Ferruz · 2023 · Cold Spring Harbor Perspectives in Biology
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- Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessmentMalbranke, Cyril, Rostain, William, Depardieu, Florence, Cocco, Simona, Monasson, Rémi, Bikard, David · 2023 · PLOS Computational Biology
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- Language models for protein designJin Seop Lee, Osama Abdin, Philip M. Kim · 2025 · Current Opinion in Structural Biology
- Advances in generative modeling methods and datasets to design novel enzymes for renewable chemicals and fuelsRana Ahmed Barghout, Zhi-Qing J. Xu, Siddharth Betala, Radhakrishnan Mahadevan · 2023 · Current Opinion in Biotechnology
- Toward deep learning sequence–structure co-generation for protein designChentong Wang, Sarah Alamdari, Carles Domingo-Enrich, Ava P. Amini, Kevin Yang · 2025 · Current Opinion in Structural Biology
- SARITA: a large language model for generating the S1 subunit of the SARS-CoV-2 spike proteinSimone Rancati, Giovanna Nicora, Laura Bergomi, Tommaso Mario Buonocore, Daniel M. Czyż, Enea Parimbelli, Riccardo Bellazzi, Marco Salemi, Mattia Prosperi, Simone Marini · 2025 · Briefings in Bioinformatics
- Uncovering the Genomic Manifold via Scalable Learning from the Global MicrobiomeWeimin Wu, Zhihan Zhou, Robert W. Riley, Mohammad Abdulqader, Xuefeng Song, Satria Ardhe Kautsar, Rob S Egan, Steven A. Hofmeyr, Gefei Liu, Shira Goldhaber-Gordon et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Large language models transform biological research: from architecture to utilizationWang, Tao, Luo, Zeyu · 2025 · Science China Information Sciences
- The Development Landscape of Large Language Models for Biomedical ApplicationsZhiyuan Cao, Vipina K. Keloth, Qianqian Xie, Lingfei Qian, Yuntian Liu, Yan Wang, Rui Shi, Weipeng Zhou, Gui Fen Yang, Jeffrey Zhang et al. · 2025 · Annual Review of Biomedical Data Science
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- AI sheds new light on genome editingZhaohui Steve Qin, Zhaolong Deng, Chengwei Li, Daowen Wang, Xiang Ji, Zhen Chen · 2025 · Trends in biotechnology
- Fine-tuning protein language models unlocks the potential of underrepresented viral proteomesSawhney, Rajan, Ferrell, Barbra D., Dejean, Thibaut, Schreiber, Zachary, Harrigan, William, Polson, Shawn W., Wommack, K. Eric, Belcaid, Mahdi · 2025 · PeerJ
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- Now What Sequence? Pre-trained Ensembles for Bayesian Optimization of Protein SequencesZiyue Yang, Katarina A. Milas, Andrew D. White · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
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- De novo design of functional nucleic acids of aptamersZhiming Zhang, Meng Jiang, Axin He, Youyuan Zhu, Ercheng Wang, Liqi Wan, Jiezhong Qiu, Pei Guo, Guangyong Chen, Da Han · 2026 · Nature Computational Science
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