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Oral Druggable Space beyond the Rule of 5: Insights from Drugs and Clinical Candidates
Open accessAbstract
The rule of 5 (Ro5) is a set of in silico guidelines applied to drug discovery to prioritize compounds with an increased likelihood of high oral absorption. It has been influential in reducing attrition due to poor pharmacokinetics over the last 15 years. However, strict reliance on the Ro5 may have resulted in lost opportunities, particularly for difficult targets. To identify opportunities for oral drug discovery beyond the Ro5 (bRo5), we have comprehensively analyzed drugs and clinical candidates with molecular weight (MW) > 500 Da. We conclude that oral drugs are found far bRo5 and properties such as intramolecular hydrogen bonding, macrocyclization, dosage, and formulations can be used to improve bRo5 bioavailability. Natural products and structure-based design, often from peptidic leads, are key sources for oral bRo5 drugs. These insights should help guide the design of oral drugs in bRo5 space, which is of particular interest for difficult targets.
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“In the development of new drugs, 500 Da is often quoted as the maximum molecular weight parameter. However, it has been observed that molecules with higher molecular weights are also capable of being absorbed, and the limits of oral bioavailability appear to extend to about MW ≤ 1000 Da [70,71,72].”
From The EU’s Per- and Polyfluoroalkyl Substances (PFAS) Ban: A Case of Policy over Science (2023) · cites this paper as [71]
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“In general, PROTAC physicochemical property space falls beyond the ‘rule of 5’ (refs59,60) owing to the bifunctional nature of the molecules.”
From PROTAC targeted protein degraders: the past is prologue (2022) · cites this paper as [60]
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Citations
Cites
Lipinski, C. A., Lombardo, F., Dominy, B. W., & Feeney, P. J. (2001) · Advanced Drug Delivery Reviews · doi:10.1016/s0169-409x(00)00129-0 · Cited by 18,139
Lipinski, C. A., Lombardo, F., Dominy, B. W., & Feeney, P. J. (1997) · Advanced Drug Delivery Reviews · doi:10.1016/s0169-409x(96)00423-1 · Cited by 11,484
Molecular properties that influence the oral bioavailability of drug candidates
Veber, D. F., Johnson, S. R., Cheng, H.-Y., Smith, B. R., Ward, K. W., & Kopple, K. D. (2002) · Journal of Medicinal Chemistry · doi:10.1021/jm020017n · Cited by 8,420
Lead- and drug-like compounds: the rule-of-five revolution
Lipinski, C. A. (2004) · Drug Discovery Today Technologies · doi:10.1016/j.ddtec.2004.11.007 · Cited by 6,455
Escape from Flatland: Increasing Saturation as an Approach to Improving Clinical Success
Lovering, F., Bikker, J. A., & Humblet, C. C. (2009) · Journal of Medicinal Chemistry · doi:10.1021/jm901241e · Cited by 4,614
Can the pharmaceutical industry reduce attrition rates?
Kola, I., & Landis, J. (2004) · Nature Reviews Drug Discovery · doi:10.1038/nrd1470 · Cited by 4,167
Drug-like properties and the causes of poor solubility and poor permeability
Lipinski, C. A. (2000) · Journal of Pharmacological and Toxicological Methods · doi:10.1016/s1056-8719(00)00107-6 · Cited by 3,776
How to improve R&D productivity: the pharmaceutical industry's grand challenge
Paul, S. M., Mytelka, D. S., Dunwiddie, C. T., Persinger, C. C., Munos, B. H., Lindborg, S. R., & Schacht, A. L. (2010) · Nature Reviews Drug Discovery · doi:10.1038/nrd3078 · Cited by 3,566
Membrane transporters in drug development
The International Transporter Consortium, Giacomini, K. M., Huang, S.-M., Tweedie, D. J., Benet, L. Z., Brouwer, K. L. R., Chu, X., Dahlin, A., Evers, R., Fischer, V., et al. (2010) · Nature Reviews Drug Discovery · doi:10.1038/nrd3028 · Cited by 3,340
Ertl, P., Rohde, B., & Selzer, P. M. (2000) · Journal of Medicinal Chemistry · doi:10.1021/jm000942e · Cited by 3,149
Research works printed but not linked: 1
- Bilello, J.P., Dousson, C.B., Colla, M.L., Chapron, C., Bhadresa, S., Camire, M., Serra, I., Gillum, J.M., Lallos, L.B., McCarville, J.F., et al. (2011). Antiviral and Preclinical Profiles of HCV NS5A Inhibitors IDX380 and IDX719. Proceedings of the 18th International Symposium on Hepatitis C Virus and Related Viruses, Seattle; September 8–12, 2011.
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Newman, D. J., & Cragg, G. M. L. (2020) · Journal of Natural Products · doi:10.1021/acs.jnatprod.9b01285 · Cited by 7,656
Natural products as sources of new drugs from 1981 to 2014
Newman, D. J., & Cragg, G. M. (2016) · Journal of Natural Products · doi:10.1021/acs.jnatprod.5b01055 · Cited by 5,858
Natural products in drug discovery: advances and opportunities
Atanasov, A. G., Zotchev, S. B., Dirsch, V. M., Taskforce, T. I. N. P. S., Orhan, İ. E., Banach, M., Rollinger, J. M., Barreca, D., Weckwerth, W., Bauer, R., et al. (2021) · Nature Reviews Drug Discovery · doi:10.1038/s41573-020-00114-z · Cited by 5,891
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Békés, M., Langley, D. R., & Crews, C. M. (2022) · Nature Reviews Drug Discovery · doi:10.1038/s41573-021-00371-6 · Cited by 3,395
Towards the sustainable discovery and development of new antibiotics
Miethke, M., Pieroni, M., Weber, T., Brönstrup, M., Hammann, P., Halby, L., Arimondo, P. B., Glaser, P., Aigle, B., Bode, H. B., et al. (2021) · Nature Reviews Chemistry · doi:10.1038/s41570-021-00313-1 · Cited by 1,228
Non-coding RNAs as drug targets
Matsui, M., & Corey, D. R. (2016) · Nature Reviews Drug Discovery · doi:10.1038/nrd.2016.117 · Cited by 1,042
Concepts of Artificial Intelligence for Computer-Assisted Drug Discovery
Yang, X. Y., Wang, Y., Byrne, R., Schneider, G., & Yang, S. (2019) · Chemical Reviews · doi:10.1021/acs.chemrev.8b00728 · Cited by 1,079
ETCM: an encyclopaedia of traditional Chinese medicine
Xu, H., Zhang, Y., Liu, Z., Chen, T., Lv, C.-Y., Tang, S., Zhang, X., Zhang, W., Li, Z., Zhou, R., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky987 · Cited by 841
Principles for targeting RNA with drug-like small molecules
Warner, K. D., Hajdin, C. E., & Weeks, K. M. (2018) · Nature Reviews Drug Discovery · doi:10.1038/nrd.2018.93 · Cited by 762
Advances in oral peptide therapeutics
Drucker, D. J. (2019) · Nature Reviews Drug Discovery · doi:10.1038/s41573-019-0053-0 · Cited by 686
Antibacterial Nanomaterials: Mechanisms, Impacts on Antimicrobial Resistance and Design Principles
Xie, M., Gao, M., Yun, Y. S., Malmsten, M., Rotello, V. M., Zbořil, R., Akhavan, O., Kraskouski, A. N., Amalraj, J., Cai, X., et al. (2023) · Angewandte Chemie International Edition · doi:10.1002/anie.202217345 · Cited by 514
Rings in Clinical Trials and Drugs: Present and Future
Shearer, J., Castro, J. L., Lawson, A. D. G., MacCoss, M., & Taylor, R. D. (2022) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.2c00473 · Cited by 499
Lundquist, P., & Artursson, P. (2016) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2016.07.007 · Cited by 503
Shultz, M. D. (2018) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.8b00686 · Cited by 466
Orally Absorbed Cyclic Peptides
Nielsen, D. S., Shepherd, N. E., Xu, W., Lucke, A. J., Stoermer, M. J., & Fairlie, D. P. (2017) · Chemical Reviews · doi:10.1021/acs.chemrev.6b00838 · Cited by 454
Schneider, N., Lowe, D. M., Sayle, R. A., Tarselli, M. A., & Landrum, G. A. (2016) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.6b00153 · Cited by 428
Edmondson, S. D., Yang, B., & Fallan, C. (2019) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2019.04.030 · Cited by 422
Alkaloids Used as Medicines: Structural Phytochemistry Meets Biodiversity—An Update and Forward Look
Heinrich, M., Mah, J., & Amirkia, V. (2021) · Molecules · doi:10.3390/molecules26071836 · Cited by 449
“Selecting candidates for drug developments using computational design and empirical rules has resulted in a broad discussion about their success [1].”
BackgroundBeyond the Rule of 5: Lessons Learned from AbbVie’s Drugs and Compound Collection
DeGoey, D. A., Chen, H.-J., Cox, P. B., & Wendt, M. D. (2017) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.7b00717 · Cited by 390
Analysis of the Physicochemical Properties of Acaricides Based on Lipinski's Rule of Five
Chen, X., Li, H., Tian, L., Li, Q., Luo, J., & Zhang, Y. (2020) · Journal of Computational Biology · doi:10.1089/cmb.2019.0323 · Cited by 379
“According to the RO5, a drug-like compound should have a molecular weight (MW) of < 500g/mol, a log p value of < 5 representing its hydrophobicity, no > 5 hydrogen bond donors (HBDs), and no > 10 hydrogen bond acceptor (HBA) sites (Doak et al., 2014).”
Macrocycles in Drug Discovery─Learning from the Past for the Future
Jiménez, D. G., Poongavanam, V., & Kihlberg, J. O. (2023) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.3c00134 · Cited by 359
Self-citationHow Beyond Rule of 5 Drugs and Clinical Candidates Bind to Their Targets
Doak, B. C., Zheng, J., Dobritzsch, D., & Kihlberg, J. O. (2015) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.5b01286 · Cited by 348
Self-citationOral delivery of macromolecular drugs: Where we are after almost 100 years of attempts
Moroz, E., Matoori, S., & Leroux, J. (2016) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2016.01.010 · Cited by 342
How Big Is Too Big for Cell Permeability?
Matsson, P., & Kihlberg, J. (2017) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.7b00237 · Cited by 303
Self-citationCell permeability beyond the rule of 5
Matsson, P., Doak, B. C., Over, B., & Kihlberg, J. O. (2016) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2016.03.013 · Cited by 305
Self-citationQuantifying the chameleonic properties of macrocycles and other high-molecular-weight drugs
Whitty, A., Zhong, M., Viarengo‐Baker, L. A., Beglov, D., Hall, D. R., & Vajda, S. (2016) · Drug Discovery Today · doi:10.1016/j.drudis.2016.02.005 · Cited by 291
FAF-Drugs3: a web server for compound property calculation and chemical library design
Lagorce, D., Spérandio, O., Baell, J. B., Miteva, M. A., & Villoutreix, B. O. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv353 · Cited by 285
Lagorce, D., Douguet, D., Miteva, M. A., & Villoutreix, B. O. (2017) · Scientific Reports · doi:10.1038/srep46277 · Cited by 278
Crew, A. P., Raina, K., Dong, H., Qian, Y., Wang, J., Vigil, D., Serebrenik, Y. V., Hamman, B. D., Morgan, A., Ferraro, C., et al. (2018) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.7b00635 · Cited by 257
Meanwell, N. A. (2016) · Chemical Research in Toxicology · doi:10.1021/acs.chemrestox.6b00043 · Cited by 246
Concepts and Core Principles of Fragment-Based Drug Design
Kirsch, P., Hartman, A. M., Hirsch, A. K. H., & Empting, M. (2019) · Molecules · doi:10.3390/molecules24234309 · Cited by 260
“Importantly, it has to be noted that eventual drugs and clinical candidates can still have good bioavailability, whilst violating the Lipinski rules [19].”
BackgroundSebastiano, M. R., Doak, B. C., Backlund, M., Poongavanam, V., Over, B., Ermondi, G., Caron, G., Matsson, P., & Kihlberg, J. O. (2018) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.8b00347 · Cited by 242
Self-citationChagas, C. M., Moss, S., & Alisaraie, L. (2018) · International Journal of Pharmaceutics · doi:10.1016/j.ijpharm.2018.07.046 · Cited by 244
Naylor, M. R., Ly, A. M., Handford, M. J., Ramos, D. P., Pye, C. R., Furukawa, A., Klein, V. G., Noland, R. P., Edmondson, Q. D., Turmon, A. C., et al. (2018) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.8b01259 · Cited by 216
Structural and conformational determinants of macrocycle cell permeability
Over, B., Matsson, P., Tyrchan, C., Artursson, P., Doak, B. C., Foley, M. A., Hilgendorf, C., Johnston, S. E., Lee, M. D., Lewis, R. J., et al. (2016) · Nature Chemical Biology · doi:10.1038/nchembio.2203 · Cited by 209
“6b), eight microstates were defined based on the patterns of intramolecular hydrogen bonds among the protonated amine, carbonyl and hydroxyl functions: (1) NH–OH–O=C, (2) NH–OH–OC, (3) NH–OH, (4) NH–O=C, (5) OH–O=C, (6) NH–OC, (7) OH–OC, (8) no detectable hydrogen bonds.”
BackgroundSelf-citationSolution Conformations Shed Light on PROTAC Cell Permeability
Atilaw, Y., Poongavanam, V., Svensson Nilsson, C., Nguyen, D., Giese, A., Meibom, D., Erdelyi, M., & Kihlberg, J. (2021) · ACS Medicinal Chemistry Letters · doi:10.1021/acsmedchemlett.0c00556 · Cited by 208
Self-citationCecchini, C., Pannilunghi, S., Tardy, S., & Scapozza, L. (2021) · Frontiers in Chemistry · doi:10.3389/fchem.2021.672267 · Cited by 201
Naylor, M. R., Bockus, A. T., Blanco, M.-J., & Lokey, R. S. (2017) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2017.04.012 · Cited by 190
“The small group of orally delivered drugs and clinical candidates that lie outside the Ro5 are highly enriched in macrocyclic natural products and derivatives thereof [4 ,10,11].”
BackgroundPhysicochemical Property Determinants of Oral Absorption for PROTAC Protein Degraders
Hornberger, K. R., & Araujo, E. M. V. (2023) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.3c00740 · Cited by 189
Second-generation DNA-templated macrocycle libraries for the discovery of bioactive small molecules
Usanov, D. L., Chan, A. I., Maianti, J. P., & Liu, D. R. (2018) · Nature Chemistry · doi:10.1038/s41557-018-0033-8 · Cited by 186
Molecular inflation, attrition and the rule of five
Leeson, P. D. (2016) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2016.01.018 · Cited by 184
Tanada, M., Tamiya, M., Matsuo, A., Chiyoda, A., Takano, K., Ito, T., Irie, M., Kotake, T., Takeyama, R., Kawada, H., et al. (2023) · Journal of the American Chemical Society · doi:10.1021/jacs.3c03886 · Cited by 188
Macrocycles as protein–protein interaction inhibitors
Dougherty, P. G., Qian, Z., & Pei, D. (2017) · Biochemical Journal · doi:10.1042/bcj20160619 · Cited by 181
“Significant advances have also been made in improving the membrane permeability and oral bioavailability of macrocyclic drugs with analysis of current clinicallyrelevant macrocycles and natural products [29, 30].”
BackgroundAhlbach, C., Lexa, K. W., Bockus, A. T., Chen, V., Crews, P., Jacobson, M. P., & Lokey, R. S. (2015) · Future Medicinal Chemistry · doi:10.4155/fmc.15.78 · Cited by 184
The Symbiotic Relationship Between Drug Discovery and Organic Chemistry
Grygorenko, O. O., Volochnyuk, D. M., Ryabukhin, S. V., & Judd, D. B. (2019) · Chemistry - A European Journal · doi:10.1002/chem.201903232 · Cited by 174
Fundamental aspects of DMPK optimization of targeted protein degraders
Cantrill, C., Chaturvedi, P., Rynn, C., Schaffland, J. P., Walter, I., & Wittwer, M. (2020) · Drug Discovery Today · doi:10.1016/j.drudis.2020.03.012 · Cited by 170
Developing degraders: principles and perspectives on design and chemical space
Maple, H. J., Clayden, N., Baron, A., Stacey, C., & Felix, R. L. (2019) · MedChemComm · doi:10.1039/c9md00272c · Cited by 163
Owen, A., & Rannard, S. P. (2016) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2016.02.003 · Cited by 161
“culminated in the biophysical classification system (BCS) and design rules for optimal bioavailability such as Lipinski’s rule of five and its various iterations [18, 19].”
MethodSelective PROTAC-mediated degradation of SMARCA2 is efficacious in SMARCA4 mutant cancers
Cantley, J. L., Ye, X., Rousseau, E., Januario, T., Hamman, B. D., Rose, C. M., Cheung, T. K., Hinkle, T. B., Soto, L., Quinn, C., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-34562-5 · Cited by 159
Target-Based Evaluation of “Drug-Like” Properties and Ligand Efficiencies
Leeson, P. D., Bento, A. P., Gaulton, A., Hersey, A., Manners, E. J., Radoux, C. J., & Leach, A. R. (2021) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.1c00416 · Cited by 164
Emerging Methods and Design Principles for Cell‐Penetrant Peptides
Peraro, L., & Kritzer, J. A. (2018) · Angewandte Chemie International Edition · doi:10.1002/anie.201801361 · Cited by 160
Pye, C. R., Hewitt, W. M., Schwochert, J. A., Haddad, T. D., Townsend, C. E., Etienne, L., Lao, Y., Limberakis, C., Furukawa, A., Mathiowetz, A. M., et al. (2017) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.6b01483 · Cited by 153
“23 To determine whether the apparent permeabilities observed in our system are concordant with current physics-based models, we set out to (1) determine their hydrocarbon/water partition coefficients experimentally and (2) account for the decrease in solubility at higher lipophilicities to determine their intrinsic pe…”
ResultComparative Evaluation of Covalent Docking Tools
Scarpino, A., Ferenczy, G. G., & Keserű, G. M. (2018) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.8b00228 · Cited by 155
Understanding and Improving the Membrane Permeability of VH032-Based PROTACs
Klein, V. G., Townsend, C. E., Testa, A., Zengerle, M., Maniaci, C., Hughes, S. J., Chan, K.-H., Ciulli, A., & Lokey, R. S. (2020) · ACS Medicinal Chemistry Letters · doi:10.1021/acsmedchemlett.0c00265 · Cited by 154
Amide-to-Ester Substitution as a Strategy for Optimizing PROTAC Permeability and Cellular Activity
Klein, V. G., Bond, A. G., Craigon, C., Lokey, R. S., & Ciulli, A. (2021) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.1c01496 · Cited by 152
Linker-Dependent Folding Rationalizes PROTAC Cell Permeability
Poongavanam, V., Atilaw, Y., Siegel, S., Giese, A., Lehmann, L. E., Meibom, D., Erdélyi, M., & Kihlberg, J. O. (2022) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.2c00877 · Cited by 154
Self-citationOral Administration of Peptide‐Based Drugs: Beyond Lipinski's Rule
dos Santos, G. B., Ganesan, A., & Emery, F. D. S. (2016) · ChemMedChem · doi:10.1002/cmdc.201600288 · Cited by 152
Drug discovery beyond the rule of 5 - Opportunities and challenges
Doak, B. C., & Kihlberg, J. O. (2016) · Expert Opinion on Drug Discovery · doi:10.1080/17460441.2017.1264385 · Cited by 149
Self-citationCharacteristic roadmap of linker governs the rational design of PROTACs
Dong, Y., Ma, T., Xu, T., Feng, Z., Li, Y., Song, L., Yao, X., Ashby, C. R., & Hao, G.-F. (2024) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2024.04.007 · Cited by 146
“When the MW exceeds 1000 Da, there is a significant decrease in cellular permeability 185,186 .”
Overcoming the Shortcomings of Peptide-Based Therapeutics
Lamers, C. (2022) · Future Drug Discovery · doi:10.4155/fdd-2022-0005 · Cited by 154
De novo development of small cyclic peptides that are orally bioavailable
Merz, M. L., Habeshian, S., Li, B., David, J.-A. G. L., Nielsen, A. L., Ji, X., Khwildy, K. I., Benitez, M. M. D., Phothirath, P., & Heinis, C. (2023) · Nature Chemical Biology · doi:10.1038/s41589-023-01496-y · Cited by 161
“A structure–activity relationship analysis of the 20 top hits revealed six groups of peptides with related structures (peptides 11–30 ; Fig.”
InfluentialBockus, A. T., Schwochert, J. A., Pye, C. R., Townsend, C. E., Sok, V., Bednarek, M. A., & Lokey, R. S. (2015) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.5b00919 · Cited by 135
Tinworth, C. P., & Young, R. J. (2020) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.9b01596 · Cited by 132
Zhang, Y., Li, X., Shi, Y., Chen, T., Xu, Z., Wang, P., Yu, M., Chen, W., Li, B., Jing, Z., et al. (2023) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2023.03.012 · Cited by 131
Rule of five violations among the FDA-approved small molecule protein kinase inhibitors
Roskoski, R. J. (2023) · Pharmacological Research · doi:10.1016/j.phrs.2023.106774 · Cited by 144
Costa, F. M. T. A., Teixeira, C. A. S., Gomes, P. A. C., & Martins, M. C. L. (2019) · Advances in experimental medicine and biology · doi:10.1007/978-981-13-3588-4_15 · Cited by 129
Solution Conformations Explain the Chameleonic Behaviour of Macrocyclic Drugs
Danelius, E., Poongavanam, V., Peintner, S., Wieske, L. H. E., Erdélyi, M., & Kihlberg, J. O. (2020) · Chemistry - A European Journal · doi:10.1002/chem.201905599 · Cited by 131
Self-citationQuality guidelines for oral drug candidates: dose, solubility and lipophilicity
Bayliss, M. K., Butler, J., Feldman, P. L., Green, D. V. S., Leeson, P. D., Palovich, M. R., & Taylor, A. J. (2016) · Drug Discovery Today · doi:10.1016/j.drudis.2016.07.007 · Cited by 127
Ivanenkov, Y. A., Zagribelnyy, B. A., & Aladinskiy, V. (2019) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.9b00004 · Cited by 125
Unlocking G-Quadruplexes as Antiviral Targets
Abiri, A., Lavigne, M., Rezaei, M., Nikzad, S., Zare, P., Mergny, J., & Rahimi, H. R. (2021) · Pharmacological Reviews · doi:10.1124/pharmrev.120.000230 · Cited by 121
“Even though Lipinski’s rule of five was initially applied to oral drugs and has been challenged these years, at least for some parameters, this rule provides useful guidelines for optimizing pharmacokinetic tolerance and efficacy (Doak et al., 2014).”
Backgroundde Oliveira, E. C. L., da Costa, K. S., Josino, L. P. C., Lima, A. H., & Sales, C. (2021) · Scientific Reports · doi:10.1038/s41598-021-87134-w · Cited by 128
“…membranes which are obtained from the molecular structures of peptides— MW, tPSA, Fsp 3 , cLogP, HBA, HBD, NAR, NRB, and net charge (NetC)— 64,84 , as well as, some properties related to the polar charged groups—primary amine groups (NPA), number of guanidine groups (NG), and number of…”
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Why Some Targets Benefit from beyond Rule of Five Drugs
Egbert, M. E., Whitty, A., Keserű, G. M., & Vajda, S. (2019) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.8b01732 · Cited by 123
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Caron, G., Digiesi, V., Solaro, S., & Ermondi, G. (2020) · Drug Discovery Today · doi:10.1016/j.drudis.2020.01.012 · Cited by 118
Evolution of In Silico Strategies for Protein-Protein Interaction Drug Discovery
Macalino, S. J. Y., Basith, S., Clavio, N. A. B., Chang, H., Kang, S., & Choi, S. (2018) · Molecules · doi:10.3390/molecules23081963 · Cited by 114
“Recent assessment of current drugs gave rise to beyond-rule of 5 (bRO5) characterization of orally bioavailable compounds [123,124].”
BackgroundThe ethnic migrant inventor effect: Codification and recombination of knowledge across borders
Choudhury, P., & Kim, D. Y. (2018) · Strategic Management Journal · doi:10.1002/smj.2977 · Cited by 112
DNA Barcoding a Complete Matrix of Stereoisomeric Small Molecules
Gerry, C. J., Wawer, M. J., Clemons, P. A., & Schreiber, S. L. (2019) · Journal of the American Chemical Society · doi:10.1021/jacs.9b01203 · Cited by 117
DNA-encoded libraries (DELs): a review of on-DNA chemistries and their output
Shi, Y., Wu, Y., Yu, J., Zhang, W., & Zhuang, C. (2021) · RSC Advances · doi:10.1039/d0ra09889b · Cited by 114
Improving Accuracy, Diversity, and Speed with Prime Macrocycle Conformational Sampling
Sindhikara, D., Spronk, S. A., Day, T., Borrelli, K. W., Cheney, D. L., & Posy, S. (2017) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.7b00052 · Cited by 110
Approaches to CNS Drug Delivery with a Focus on Transporter-Mediated Transcytosis
Razzak, R. A., Florence, G. J., & Gunn‐Moore, F. J. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms20123108 · Cited by 118
“Therefore, opti izing the physiochemical properties of drug candidates to evade these processes has become an integral part of the drug discovery paradigm [25,40,41].”
BackgroundOhta, A., Tanada, M., Shinohara, S., Morita, Y., Nakano, K., Yamagishi, Y., Takano, R., Kariyuki, S., Iida, T., Matsuo, A., et al. (2023) · Journal of the American Chemical Society · doi:10.1021/jacs.3c07145 · Cited by 118
Cyclosporin Structure and Permeability: From A to Z and Beyond
Corbett, K. M., Ford, L., Warren, D. B., Pouton, C. W., & Chalmers, D. K. (2021) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.1c00580 · Cited by 112
Mapping the Efficiency and Physicochemical Trajectories of Successful Optimizations
Young, R. J., & Leeson, P. D. (2018) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.8b00180 · Cited by 113
Subbaiah, M. A. M., Rautio, J., & Meanwell, N. A. (2024) · Chemical Society Reviews · doi:10.1039/d2cs00957a · Cited by 109
Opportunities and guidelines for discovery of orally absorbed drugs in beyond rule of 5 space
Poongavanam, V., Doak, B. C., & Kihlberg, J. O. (2018) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2018.05.010 · Cited by 97
Self-citationChallenging the Drug-Likeness Dogma for New Drug Discovery in Tuberculosis
Machado, D., Girardini, M., Viveiros, M., & Pieroni, M. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.01367 · Cited by 99
“Despite these facts, a close analysis of the currently marketed drugs used for the treatment of several diseases, that must be by definition harmless and effective, shows that a small percentage of them present a panoply of “forbidden” functionalities (structural alerts) and “unacceptable” properties, including endope…”
BackgroundMolecular chameleons in drug discovery
Poongavanam, V., Wieske, L. H. E., Peintner, S., Erdélyi, M., & Kihlberg, J. O. (2023) · Nature Reviews Chemistry · doi:10.1038/s41570-023-00563-1 · Cited by 98
“Drugs that reside in the chemical space beyond the Ro5 can also display satisfactory oral bioavailability 21,22 , and it has been postulated that they often behave as molecular chameleons 3 (Box 2).”
InfluentialSelf-citationIntroduction to small molecule drug discovery and preclinical development
Southey, M. W. Y., & Brunavs, M. (2023) · Frontiers in Drug Discovery · doi:10.3389/fddsv.2023.1314077 · Cited by 106
Furukawa, A., Townsend, C. E., Schwochert, J. A., Pye, C. R., Bednarek, M. A., & Lokey, R. S. (2016) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.6b01246 · Cited by 96
Poongavanam, V., Danelius, E., Peintner, S., Alcaraz, L., Caron, G., Cummings, M. D., Wlodek, S. T., Erdélyi, M., Hawkins, P. C. D., Ermondi, G., et al. (2018) · ACS Omega · doi:10.1021/acsomega.8b01379 · Cited by 91
Self-citationDo Drug‐likeness Rules Apply to Oral Prodrugs?
Protti, Í. F., Rodrigues, D. R., Fonseca, S. K., Alves, R. J., de Oliveira, R. B., & Maltarollo, V. G. (2021) · ChemMedChem · doi:10.1002/cmdc.202000805 · Cited by 98
Degrader–Antibody Conjugates: Emerging New Modality
Hong, K. B., & An, H. (2022) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.2c01791 · Cited by 93
Price, E., Weinheimer, M., Rivkin, A., Jenkins, G. J., Nijsen, M., Cox, P. B., & DeGoey, D. A. (2024) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.3c02332 · Cited by 95
Pathania, S., & Singh, P. K. (2020) · Expert Opinion on Drug Metabolism & Toxicology · doi:10.1080/17425255.2021.1865309 · Cited by 93
“It also underlines the need to identify new parameters which can be applied to determine pharmacokinetic behavior of complex drug molecules [20].”
Backgroundda Costa, K. S., do Nascimento, L. D., Lima, A. H., Damasceno, V., Nahum, C., Braga, R. C., & Lameira, J. (2021) · Frontiers in Chemistry · doi:10.3389/fchem.2021.662688 · Cited by 94
“, macrolides), are located beyond the chemical limits determined by the rule of five (beyond the rule of five, bRO5) (Doak et al., 2014; Naylor et al., 2017; Rossi Sebastiano et al., 2018).”
BackgroundAdvancements in antimicrobial nanoscale materials and self-assembling systems
Doolan, J. A., Williams, G. T., Hilton, K. L. F., Chaudhari, R., Fossey, J., Goult, B. T., & Hiscock, J. R. (2022) · Chemical Society Reviews · doi:10.1039/d1cs00915j · Cited by 90
Absorption matters: A closer look at popular oral bioavailability rules for drug approvals
Soares, A. C. G., Sousa, G. H. M., Calil, R. L., & Trossini, G. H. G. (2023) · Molecular Informatics · doi:10.1002/minf.202300115 · Cited by 106
Khdair, A. A., Hamad, I. M., AlKhatib, H. S., Bustanji, Y. K., Mohammad, M., Tayem, R., & Aiedeh, K. (2016) · European Journal of Pharmaceutical Sciences · doi:10.1016/j.ejps.2016.07.012 · Cited by 87
O’ Donovan, D. H., De Fusco, C., Kuhnke, L., & Reichel, A. (2023) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.2c01577 · Cited by 83
Surface loops of trypsin-like serine proteases as determinants of function
Goettig, P., Brandstetter, H., & Magdolen, V. (2019) · Biochimie · doi:10.1016/j.biochi.2019.09.004 · Cited by 83
Metadata
- Authors
- Doak, B. C., Over, B., Giordanetto, F., & Kihlberg, J.
- Affiliations
- Uppsala University (SE)
- Corresponding author
- Kihlberg, Jan
- Venue
- Chemistry & Biology
- Publisher
- Elsevier BV
- Published
- 2014-09
- Volume
- 21
- Issue
- 9
- Pages
- 1115-1142
- ISSN
- 1074-5521 (ISSN-L)
- OpenAlex
- W2106605095
- Cited by
- 835
- References
- 295
- Citations by year
- 2026: 101 · 2025: 82 · 2024: 103 · 2023: 111 · 2022: 103 · 2021: 88 · 2020: 65 · 2019: 50 · 2018: 51 · 2017: 27 · 2016: 37 · 2015: 14
- FWCI
- 2.15
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Chemistry & Biology (publishedVersion, public-domain)
- PubMed (publishedVersion)
- Funders
- AstraZeneca
- Uppsala Universitet
- Topics
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Drug Discovery › Computational Drug Discovery Methods
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Pharmaceutical Science › Drug Solubulity and Delivery Systems
- Physical Sciences › Chemistry › Organic Chemistry › Chemical Synthesis and Analysis
- Keywords
- Rule of 5, oral bioavailability, drug discovery, molecular weight, intramolecular hydrogen bonding, macrocyclization, oral dosage forms, natural products, structure-based drug design, pharmacokinetics, clinical candidates
- MeSH terms
- Administration, Oral, Biological Products, Pharmaceutical Preparations, Humans, Molecular Weight, Protease Inhibitors, Databases, Factual, Drug Delivery Systems, Macrocyclic Compounds, Drug Discovery
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