The DOI matches its Crossref record; 51 of the 51 references it cites were found in a registry or an index.
Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella
Open accessAbstract
The mammalian intestine is host to a microbial community that prevents pathogen expansion through unknown mechanisms, while antibiotic treatment can increase susceptibility to enteric pathogens. Here we show that streptomycin treatment depleted commensal, butyrate-producing Clostridia from the mouse intestinal lumen, leading to decreased butyrate levels, increased epithelial oxygenation, and aerobic expansion of Salmonella enterica serovar Typhimurium. Epithelial hypoxia and Salmonella restriction could be restored by tributyrin treatment. Clostridia depletion and aerobic Salmonella expansion were also observed in the absence of streptomycin treatment in genetically resistant mice but proceeded with slower kinetics and required the presence of functional Salmonella type III secretion systems. The Salmonella cytochrome bd-II oxidase synergized with nitrate reductases to drive luminal expansion, and both were required for fecal-oral transmission. We conclude that Salmonella virulence factors and antibiotic treatment promote pathogen expansion through the same mechanism: depletion of butyrate-producing Clostridia to elevate epithelial oxygenation, allowing aerobic Salmonella growth.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“When butyrate is reduced with antibiotic treatment oxygen availability increases, which promotes the growth of facultatively anaerobic pathogens [50].”
From Role of the gut microbiota in nutrient competition and protection against intestinal pathogen colonization (2023) · cites this paper as [50]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species
Atarashi, K., Tanoue, T., Shima, T., Imaoka, A., Kuwahara, T., Momose, Y., Cheng, G., Yamasaki, S., Saito, T., Ohba, Y., et al. (2011) · Science · doi:10.1126/science.1198469 · Cited by 3,752
Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota
Atarashi, K., Tanoue, T., Oshima, K., Suda, W., Nagano, Y., Nishikawa, H., Fukuda, S., Saito, T., Narushima, S., Hase, K., et al. (2013) · Nature · doi:10.1038/nature12331 · Cited by 2,872
The Global Burden of Nontyphoidal Salmonella Gastroenteritis
Majowicz, S. E., Musto, J., Scallan, E., Angulo, F. J., Kirk, M., O’Brien, S. J., Jones, T. F., Fazil, A., & Hoekstra, R. M. (2010) · Clinical Infectious Diseases · doi:10.1086/650733 · Cited by 2,465
Louis, P., & Flint, H. J. (2009) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2009.01514.x · Cited by 2,179
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2
McClelland, M., Sanderson, K. E., Spieth, J., Clifton, S. W., Latreille, P., Courtney, L., Porwollik, S., Ali, J., Dante, M., Du, F., et al. (2001) · Nature · doi:10.1038/35101614 · Cited by 1,838
Kelly, C. J., Zheng, L., Campbell, E. L., Saeedi, B., Scholz, C. C., Bayless, A. J., Wilson, K. E., Glover, L. E., Kominsky, D. J., Magnuson, A., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.03.005 · Cited by 1,716
Gut inflammation provides a respiratory electron acceptor for Salmonella
Winter, S., Thiennimitr, P., Winter, M. G., Butler, B. P., Huseby, D. L., Crawford, R. W., Russell, J. M., Bevins, C. L., Adams, L. G., Tsolis, R. M., et al. (2010) · Nature · doi:10.1038/nature09415 · Cited by 1,271
Self-citationWhy is the partial oxygen pressure of human tissues a crucial parameter? Small molecules and hypoxia
Carreau, A., Hafny‐Rahbi, B. E., Matejuk, A., Grillon, C., & Kieda, C. (2011) · Journal of Cellular and Molecular Medicine · doi:10.1111/j.1582-4934.2011.01258.x · Cited by 1,246
Simultaneous Identification of Bacterial Virulence Genes by Negative Selection
Hensel, M., Shea, J. E., Gleeson, C., Jones, M. D., Dalton, E. C., & Holden, D. W. (1995) · Science · doi:10.1126/science.7618105 · Cited by 1,200
Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data
Vital, M., Howe, A. C., & Tiedje, J. M. (2014) · mBio · doi:10.1128/mbio.00889-14 · Cited by 1,189
Cited by
Sorted by citations
Items 301–400 of 866
Human gut bifidobacteria inhibit the growth of the opportunistic fungal pathogen Candida albicans
Ricci, L., Mackie, J., Donachie, G. E., Chapuis, A. F., Mezerová, K., Lenardon, M. D., Brown, A. J. P., Duncan, S. H., & Walker, A. W. (2022) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiac095 · Cited by 45
Song, J., Li, Q., Everaert, N., Liu, R., Zheng, M., Zhao, G., & Wen, J. (2020) · Journal of Animal Science · doi:10.1093/jas/skz396 · Cited by 41
Gut microbiome signatures and host colonization with multidrug-resistant bacteria
Isles, N. S., Mu, A., Kwong, J. C., Howden, B. P., & Stinear, T. P. (2022) · Trends in Microbiology · doi:10.1016/j.tim.2022.01.013 · Cited by 39
Experimental Microbiomes: Models Not to Scale
Chevrette, M. G., Bratburd, J. R., Currie, C. R., & Stubbendieck, R. M. (2019) · mSystems · doi:10.1128/msystems.00175-19 · Cited by 40
Tiffany, C. R., Lee, J., Rogers, A. W. L., Olsan, E. E., Morales, P., Faber, F., & Bäumler, A. J. (2021) · Microbiome · doi:10.1186/s40168-021-01123-9 · Cited by 40
Self-citationThe role of two-component regulatory systems in environmental sensing and virulence inSalmonella
de Pina, L. C., da Silva, F. S. H., Galvão, T. C., Pauer, H., Ferreira, R. B. R., & Antunes, L. C. M. (2021) · Critical Reviews in Microbiology · doi:10.1080/1040841x.2021.1895067 · Cited by 39
Gut Enterobacteriaceae and uraemic toxins - Perpetrators for ageing
Boopathi, S., Kumar, R. M. S., Priya, P. S., Haridevamuthu, B., Nayak, S. P. R. R., Chulenbayeva, L., Kushugulova, A. R., & Arockiaraj, J. (2023) · Experimental Gerontology · doi:10.1016/j.exger.2023.112088 · Cited by 40
Murine Models of Salmonella Infection
Walker, G. T., Gerner, R. R., Nuccio, S., & Raffatellu, M. (2023) · Current Protocols · doi:10.1002/cpz1.824 · Cited by 39
Shelton, C. D., & Byndloss, M. X. (2020) · Infection and Immunity · doi:10.1128/iai.00939-19 · Cited by 43
Self-citationElmeń, L., Zlamal, J. E., Scott, D. A., Lee, R. B., Chen, D. J., Colas, A. R., Rodionov, D. A., & Peterson, S. N. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00892 · Cited by 39
Schubert, M., Rohrbach, R., Schmitt, M. W., & Stein‐Thoeringer, C. K. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.670286 · Cited by 40
Petrullo, L. A., Ren, T., Wu, M., Boonstra, R., Palme, R., Boutin, S. A., McAdam, A. G., & Dantzer, B. (2022) · Scientific Reports · doi:10.1038/s41598-022-06359-5 · Cited by 40
Zhang, K., Xu, Y., Yang, Y., Guo, M., Zhang, T., Zong, B., Huang, S., Suo, L., Ma, B., Wang, X., et al. (2022) · Animal nutrition · doi:10.1016/j.aninu.2022.04.004 · Cited by 39
Special Diets in Infants and Children and Impact on Gut Microbioma
Profio, E. D., Magenes, V. C., Fiore, G., Agostinelli, M., Mendola, A. L., Acunzo, M., Francavilla, R., Indrio, F., Bosetti, A., D’Auria, E., et al. (2022) · Nutrients · doi:10.3390/nu14153198 · Cited by 43
Kim, K., Choe, D., Song, Y., Kang, M., Lee, S., Lee, D., & Cho, B. (2021) · Metabolic Engineering · doi:10.1016/j.ymben.2021.10.005 · Cited by 39
Sereti, I., Verburgh, M. L., Gifford, J., Lo, A., Boyd, A. C., Verheij, E., Verhoeven, A., Wit, F. W. N. M., van der Loeff, M. F. S., Giera, M. A., et al. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.113336 · Cited by 38
Evolutionary and ecological forces that shape the bacterial communities of the human gut
Messer, J. S., Liechty, E. R., Vogel, O. A., & Chang, E. B. (2017) · Mucosal Immunology · doi:10.1038/mi.2016.138 · Cited by 41
Gut microbiota promotes production of aromatic metabolites through degradation of barley leaf fiber
Li, D., Wang, P., Wang, P., Hu, X., & Chen, F. (2018) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2018.05.001 · Cited by 38
Cellular Stress Responses and Gut Microbiota in Inflammatory Bowel Disease
Cao, S. “. (2018) · Gastroenterology Research and Practice · doi:10.1155/2018/7192646 · Cited by 37
Innovative drugs, chemicals, and enzymes within the animal production chain
Hassan, Y. I., Lahaye, L., Gong, M. M., Peng, J., Gong, J., Liu, S., Gay, C. G., & Yang, C. (2018) · Veterinary Research · doi:10.1186/s13567-018-0559-1 · Cited by 44
The longitudinal and cross-sectional heterogeneity of the intestinal microbiota
Miller, B. M., Liou, M. J., Lee, J., & Bäumler, A. J. (2021) · Current Opinion in Microbiology · doi:10.1016/j.mib.2021.08.004 · Cited by 44
Self-citationLi, Y., Sun, T., Hong, Y., Qiao, T., Wang, Y., Li, W., Tang, S., Yang, X., Li, J., Li, X., et al. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.725196 · Cited by 37
Diversity and Prevalence of Clostridium innocuum in the Human Gut Microbiota
Bhattacharjee, D., Flores, C., Woelfel-Monsivais, C., & Seekatz, A. M. (2022) · mSphere · doi:10.1128/msphere.00569-22 · Cited by 38
MAIT cells: Conserved watchers on the wall
Germain, L., Veloso, P., Lantz, O. J., & Legoux, F. P. (2024) · The Journal of Experimental Medicine · doi:10.1084/jem.20232298 · Cited by 37
Trachsel, J., Bayles, D. O., Looft, T. P., Levine, U. Y., & Allen, H. K. (2016) · Applied and Environmental Microbiology · doi:10.1128/aem.02307-16 · Cited by 36
Gillis, C. C., Winter, M. G., Chanin, R. B., Zhu, W., Spiga, L., & Winter, S. (2019) · Infection and Immunity · doi:10.1128/iai.00773-18 · Cited by 35
Self-citationCommensal antimicrobial resistance mediates microbiome resilience to antibiotic disruption
Bhattarai, S. K., Du, M., Zeamer, A. L., Mortzfeld, B. M., Kellogg, T. D., Kaya, F., Benjamin, A., Bean, J. M., Zimmerman, M., Mardi, G., et al. (2024) · Science Translational Medicine · doi:10.1126/scitranslmed.adi9711 · Cited by 41
Lay, C., Chu, C. W., Purbojati, R. W., Acerbi, E., Drautz‐Moses, D. I., de Sessions, P. F., Jie, S., Ho, E. X. P., Kok, Y. J., Bi, X., et al. (2021) · BMC Microbiology · doi:10.1186/s12866-021-02230-1 · Cited by 40
Recent Trends of Microbiota-Based Microbial Metabolites Metabolism in Liver Disease
Ganesan, R., Jeong, J., Kim, D. J., & Suk, K. T. (2022) · Frontiers in Medicine · doi:10.3389/fmed.2022.841281 · Cited by 38
Palrasu, M., Kakar, K., Marudamuthu, A. S., Hamida, H., Thada, S., Yin, Z., Staley, S. C., Busbee, P. B., Li, J., Garcia-Buitrago, M. T., et al. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2460538 · Cited by 39
How bacterial pathogens use type III and type IV secretion systems to facilitate their transmission
Byndloss, M. X., Rivera-Chávez, F., Tsolis, R. M., & Bäumler, A. J. (2016) · Current Opinion in Microbiology · doi:10.1016/j.mib.2016.08.007 · Cited by 32
Self-citationMatsuo, K., Haku, A., Bi, B., Takahashi, H., Kamada, N., Yaguchi, T., Saijo, S., Yoneyama, M., & Goto, Y. (2019) · Microbiology and Immunology · doi:10.1111/1348-0421.12680 · Cited by 36
Reens, A. L., Nagy, T. A., & Detweiler, C. S. (2019) · Infection and Immunity · doi:10.1128/iai.00776-19 · Cited by 34
Fu, A., Mo, Q., Wu, Y., Wang, B., Liu, R., Tang, L., Zeng, Z., Zhang, X., & Li, W. (2019) · Food & Function · doi:10.1039/c9fo01651a · Cited by 35
The Multifaceted Bacterial Cysteine Desulfurases: From Metabolism to Pathogenesis
Das, M., Dewan, A., Shee, S., & Singh, A. (2021) · Antioxidants · doi:10.3390/antiox10070997 · Cited by 34
Lee, S., Goodson, M. L., Vang, W., Rutkowsky, J. M., Kalanetra, K. M., Bhattacharya, M., Barile, D., & Raybould, H. E. (2021) · Food & Function · doi:10.1039/d1fo00658d · Cited by 37
Dehau, T., Cherlet, M., Croubels, S., Immerseel, F. V., & Goossens, E. (2023) · mSystems · doi:10.1128/msystems.01239-22 · Cited by 38
Effect of cosmetic chemical preservatives on resident flora isolated from healthy facial skin
Wang, Q., Cui, S., Zhou, L., He, K., Song, L., Liang, H., & He, C. (2018) · Journal of Cosmetic Dermatology · doi:10.1111/jocd.12822 · Cited by 35
Disruption of intestinal oxygen balance in acute colitis alters the gut microbiome
Zong, W., Friedman, E. S., Allu, S., Firrman, J., Tu, V., Daniel, S. G., Bittinger, K. L., Liu, L., Vinogradov, S. A., & Wu, G. D. (2024) · Gut Microbes · doi:10.1080/19490976.2024.2361493 · Cited by 33
Chemical Mechanisms of Colonization Resistance by the Gut Microbial Metabolome
Chang, P. V. (2020) · ACS Chemical Biology · doi:10.1021/acschembio.9b00813 · Cited by 38
Defence and adaptation mechanisms of the intestinal epithelium upon infection
Iftekhar, A., & Sigal, M. J. (2021) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2021.151486 · Cited by 37
The Habitat Filters of Microbiota-Nourishing Immunity
Miller, B. M., & Bäumler, A. J. (2021) · Annual Review of Immunology · doi:10.1146/annurev-immunol-101819-024945 · Cited by 35
Self-citationFecal microbiome and bile acid metabolome in adult short bowel syndrome
Boutte, H. J., Chen, J., Wylie, T. N., Wylie, K. M., Xie, Y., Geisman, M., Prabu, A., Gazit, V., Tarr, P. I., Levin, M. S., et al. (2022) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00091.2021 · Cited by 33
Mechanistic and structural diversity between cytochrome bd isoforms of Escherichia coli
Grund, T. N., Radloff, M., Wu, D., Goojani, H. G., Witte, L. F., Jösting, W., Buschmann, S., Müller, H., Elamri, I., Welsch, S., et al. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2114013118 · Cited by 33
Wilson, R. P., Tursi, S. A., Rapsinski, G. J., Medeiros, N. J., Le, L. S., Kotredes, K. P., Patel, S., Liverani, E., Sun, S., Zhu, W., et al. (2019) · PLoS Pathogens · doi:10.1371/journal.ppat.1007745 · Cited by 31
Self-citationŁoniewski, I., Skonieczna‐Żydecka, K., Stachowska, L., Fraszczyk-Tousty, M., Tousty, P., & Łoniewska, B. (2022) · Frontiers in Nutrition · doi:10.3389/fnut.2022.939194 · Cited by 32
Gut metabolite L-lactate supports Campylobacter jejuni population expansion during acute infection
Sinha, R., LeVeque, R. M., Callahan, S. M., Chatterjee, S., Stopnišek, N., Kuipel, M., Johnson, J. G., & DiRita, V. J. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2316540120 · Cited by 31
In Vivo Wireless Sensors for Gut Microbiome Redox Monitoring
Baltsavias, S., Treuren, W. V., Weber, M. J., Charthad, J., Baker, S. W., Sonnenburg, J. L., & Arbabian, A. (2019) · IEEE Transactions on Biomedical Engineering · doi:10.1109/tbme.2019.2948575 · Cited by 32
Akritidou, T., Akkermans, S., Gaspari, S., Azraini, N. D., Smet, C., de Wiele, T. V., & van Impe, J. F. M. (2022) · Innovative Food Science & Emerging Technologies · doi:10.1016/j.ifset.2022.103161 · Cited by 32
Innate Immune Influences on the Gut Microbiome: Lessons from Mouse Models
Robertson, S. J., Goethel, A., Girardin, S. E., & Philpott, D. J. (2018) · Trends in Immunology · doi:10.1016/j.it.2018.10.004 · Cited by 34
Costa, L. F., Mol, J. P. S., Silva, A. P. C., Macêdo, A. A., Silva, T. M. A., Alves, G. E. S., Winter, S., Winter, M. G., Velazquez, E. M., Byndloss, M. X., et al. (2016) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2016.10.004 · Cited by 29
Self-citationListeria monocytogenes requires cellular respiration for NAD+ regeneration and pathogenesis
Rivera‐Lugo, R., Deng, D., Anaya-Sanchez, A., Tejedor-Sanz, S., Tang, E., Ruiz, V. M. R., Smith, H. B., Titov, D. V., Sauer, J.-D., Skaar, E. P., et al. (2022) · eLife · doi:10.7554/elife.75424 · Cited by 29
Age and Giardia intestinalis Infection Impact Canine Gut Microbiota
Boucard, A.-S., Thomas, M., Lebon, W., Polack, B., Florent, I., Langella, P., & Bermúdez‐Humarán, L. G. (2021) · Microorganisms · doi:10.3390/microorganisms9091862 · Cited by 30
Mucosal immunity and gut microbiota in dogs with chronic enteropathy
Eissa, N., Kittana, H., Neto, J. C. G., & Hussein, H. H. (2018) · Research in Veterinary Science · doi:10.1016/j.rvsc.2018.11.019 · Cited by 35
How Bacterial Pathogens Coordinate Appetite with Virulence
Pokorzynski, N. D., & Groisman, E. A. (2023) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00198-22 · Cited by 31
Graef, F. A., Celiberto, L. S., Allaire, J. M., Kuan, M. T. Y., Bosman, E. S., Crowley, S. M., Yang, H., Chan, J., Stahl, M., Yu, H., et al. (2021) · PLoS Pathogens · doi:10.1371/journal.ppat.1009719 · Cited by 29
Zhang, Y., Guo, M., Zhang, H., Wang, Y., Li, R., Liu, Z., Zheng, H., & You, C. (2022) · Frontiers in Nutrition · doi:10.3389/fnut.2022.1005308 · Cited by 30
Tissue metabolism and host-microbial interactions in the intestinal mucosa
Chun, C. L., Zheng, L., & Colgan, S. P. (2016) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2016.09.027 · Cited by 31
Salivary microbiome of an urban Indian cohort and patterns linked to subclinical inflammation
Acharya, A., Chan, Y., Kheur, S. M., Kheur, M. G., Gopalakrishnan, D., Watt, R., & Mattheos, N. (2017) · Oral Diseases · doi:10.1111/odi.12676 · Cited by 32
Peek, C. T., Ford, C. A., Eichelberger, K. R., Jacobse, J., Torres, T. P., Maseda, D., Latour, Y. L., Piazuelo, M. B., Johnson, J., Byndloss, M. X., et al. (2022) · Cellular and Molecular Gastroenterology and Hepatology · doi:10.1016/j.jcmgh.2022.07.002 · Cited by 29
Self-citationDeng, J., Dai, S., Liu, S., Tu, L., Cui, J. W., Hu, X., Qiu, X., Jiang, T., & Xu, J. (2024) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2024.1477638 · Cited by 33
Principles of gut microbiota assembly
Chávez‐Arroyo, A., Radlinski, L. C., & Bäumler, A. J. (2025) · Trends in Microbiology · doi:10.1016/j.tim.2025.02.014 · Cited by 32
Self-citationSteinert, R. E., Rehman, A., Sadabad, M. S., Milanese, A., Wittwer, J., Burton, J. P., & Spooren, A. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2477816 · Cited by 32
Fujimoto, M., Goto, R., Haneda, T., Okada, N., & Miki, T. (2018) · Infection and Immunity · doi:10.1128/iai.00280-18 · Cited by 28
Gokulan, K., Kolluru, P., Cerniglia, C. E., & Khare, S. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.00474 · Cited by 28
Graversen, K., Bahl, M. I., Larsen, J. M., Ballegaard, A. R., Licht, T. R., & Bøgh, K. L. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00496 · Cited by 30
How the Anaerobic Enteropathogen Clostridioides difficile Tolerates Low O 2 Tensions
Kint, N., Feliciano, C. A., Martins, M. C., Morvan, C., Fernandes, S. F., Folgosa, F., Dupuy, B., Texeira, M., & Martin‐Verstraete, I. (2020) · mBio · doi:10.1128/mbio.01559-20 · Cited by 28
Liu, H., Zhao, J., Zhang, W., & Nie, C. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.1041885 · Cited by 39
Zhang, S., Wang, Y., Ye, J., Fan, Q., Lin, X., Gou, Z., & Jiang, S. (2023) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-022-00799-9 · Cited by 28
Zhang, X., Yi, X., Yu, W., Chen, T., Gao, B., Gilbert, R. G., & Li, C. (2024) · Carbohydrate Polymers · doi:10.1016/j.carbpol.2024.121779 · Cited by 28
Intestinal bacteria—a powerful weapon for fungal infections treatment
Cong, L., Chen, C., Mao, S., Han, Z., Zhu, Z., & Li, Y. (2023) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1187831 · Cited by 29
Cherrak, Y., Salazar, M. A., Yilmaz, K., Kreuzer, M., & Hardt, W. (2024) · PLoS Biology · doi:10.1371/journal.pbio.3002616 · Cited by 29
Salmonella Typhimurium screen identifies shifts in mixed-acid fermentation during gut colonization
Nguyen, B. D., Sintsova, A., Schubert, C., Sichert, A., Scheidegger, C. A., Näf, J., Huttman, J., Lentsch, V., Keys, T. G., Rutschmann, C., et al. (2024) · Cell Host & Microbe · doi:10.1016/j.chom.2024.08.015 · Cited by 28
Han, X., Lei, X., Xuexin, Y., Shen, J., Zheng, L., Jin, C., Cao, Y., & Yao, J. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.651631 · Cited by 27
Pedroso, A. A., Lee, M. D., & Maurer, J. J. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.694215 · Cited by 27
Sibinelli‐Sousa, S., Silva, A. L. D. A., Hespanhol, J. T., & Bayer‐Santos, E. (2021) · FEBS Journal · doi:10.1111/febs.16211 · Cited by 28
Fachi, J. L., Pral, L. P., de Assis, H. C., de Oliveira, S., Rodovalho, V. D. R., dos Santos, J. A. C., Fernandes, M. F., Matheus, V. A., Sesti‐Costa, R., Basso, P. J., et al. (2024) · Gut Microbes · doi:10.1080/19490976.2023.2297872 · Cited by 27
Lin, J., Li, S., & Li, C. (2024) · Carbohydrate Polymers · doi:10.1016/j.carbpol.2024.122707 · Cited by 26
Monosaccharides drive Salmonella gut colonization in a context-dependent or -independent manner
Schubert, C., Nguyen, B. D., Sichert, A., Näpflin, N. C., Sintsova, A., Feer, L., Näf, J., Daniel, B. B. J., Steiger, Y., von Mering, C., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-56890-y · Cited by 29
A new proposed mechanism of action for gastric bypass surgery: Air hypothesis
Celiker, H. (2017) · Medical Hypotheses · doi:10.1016/j.mehy.2017.08.012 · Cited by 25
George, A. S., Cox, C. E., Desai, P., Porwollik, S., Chu, W., de Moraes, M. H., McClelland, M., Brandl, M. T., & Teplitski, M. (2017) · Applied and Environmental Microbiology · doi:10.1128/aem.01913-17 · Cited by 26
Chemical Reporters for Exploring Microbiology and Microbiota Mechanisms
Zhang, Z. J., Wang, Y., Yang, X., & Hang, H. C. (2019) · ChemBioChem · doi:10.1002/cbic.201900535 · Cited by 26
Acquistapace, S., Patel, L., Patin, A., Forbes-Blom, E., Cuenoud, B. M., & Wooster, T. J. (2019) · Food & Function · doi:10.1039/c9fo00671k · Cited by 26
Meng, W., Chen, L., Ouyang, K., Lin, S., Zhang, Y., He, J., & Wang, W. (2023) · Food Science and Human Wellness · doi:10.1016/j.fshw.2023.03.011 · Cited by 25
Geng, P., Zhao, N., Zhou, Y., Harris, R. S., & Ge, Y. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2455503 · Cited by 27
Kroon, S., Malcic, D., Weidert, L., Bircher, L., Boldt, L., Christen, P., Kiefer, P., Sintsova, A., Nguyen, B. D., Barthel, M., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-57979-0 · Cited by 26
Chen, J., Li, F., Yang, W., Jiang, S., & Li, Y. (2021) · Frontiers in Veterinary Science · doi:10.3389/fvets.2021.793174 · Cited by 25
Liu, F., Lu, H. J., Dong, B., Huang, X., Cheng, H., Qu, R., Hu, Y., Zhong, L., Guo, Z., You, Y., et al. (2023) · mSystems · doi:10.1128/msystems.00738-22 · Cited by 25
Transcriptomic profiling of Clostridium difficile grown under microaerophillic conditions
Giordano, N., Hastie, J. L., & Carlson, P. E. (2018) · Pathogens and Disease · doi:10.1093/femspd/fty010 · Cited by 25
de Carvalho, B. T., Subotić, A., Vandecruys, P., Deleu, S., Vermeire, S., & Thevelein, J. M. (2024) · Applied and Environmental Microbiology · doi:10.1128/aem.00325-24 · Cited by 26
Hu, J., Zou, H., Qiao, X., Wang, Y., Lv, M., Zhang, K., & Wang, F. (2024) · BMC Public Health · doi:10.1186/s12889-024-18683-8 · Cited by 24
Malijauskaite, S., Connolly, S. A., Newport, D. T., & McGourty, K. (2021) · Cytokine & Growth Factor Reviews · doi:10.1016/j.cytogfr.2021.03.002 · Cited by 24
Weiss, A., Lopez, C. A., Beavers, W. N., Rodriguez, J., & Skaar, E. P. (2021) · Microbial Genomics · doi:10.1099/mgen.0.000738 · Cited by 23
Self-citationWurster, J. I., Peterson, R. L., Brown, C. E., Penumutchu, S., Guzior, D. V., Neugebauer, K. A., Sano, W. H., Sebastian, M. M., Quinn, R. A., & Belenky, P. A. (2021) · Cell Reports · doi:10.1016/j.celrep.2021.110113 · Cited by 24
Trachsel, J., Bearson, B. L., Kerr, B. J., Shippy, D. C., Byrne, K. A., Loving, C. L., & Bearson, S. M. D. (2022) · Microbiology Spectrum · doi:10.1128/spectrum.02202-21 · Cited by 24
Du, C., Zhou, X., Zhang, K., Huang, S., Wang, X., Zhou, S., & Chen, Y. (2022) · BMC Microbiology · doi:10.1186/s12866-022-02687-8 · Cited by 25
Forgie, A. J., Gao, Y., Ju, T., Pepin, D. M., Yang, K., Gänzle, M. G., Ozga, J. A., Chan, C. B., & Willing, B. P. (2019) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2019.01.012 · Cited by 24
Radlinski, L. C., Rogers, A. W. L., Bechtold, L., Masson, H. L. P., Nguyen, H., Larabi, A. B., Tiffany, C. R., de Carvalho, T. P., Tsolis, R. M., & Bäumler, A. J. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2417232121 · Cited by 23
Self-citationCysteine Desulfurase IscS2 Plays a Role in Oxygen Resistance in Clostridium difficile
Giordano, N., Hastie, J. L., Smith, A. D., Foss, E. D., Gutierrez-Munoz, D. F., & Carlson, P. E. (2018) · Infection and Immunity · doi:10.1128/iai.00326-18 · Cited by 23
Using Enteric Pathogens to Probe the Gut Microbiota
Spiga, L., & Winter, S. (2018) · Trends in Microbiology · doi:10.1016/j.tim.2018.11.007 · Cited by 23
Self-citation
Metadata
- Authors
- Rivera-Chávez, F., Zhang, L. F., Faber, F., Lopez, C. A., Byndloss, M. X., Olsan, E. E., Xu, G., Velazquez, E. M., Lebrilla, C. B., Winter, S. E., & Bäumler, A. J.
- Affiliations
- University of California, Davis (US)
- The University of Texas Southwestern Medical Center (US)
- Corresponding author
- Bäumler, Andreas J.
- ORCID
- Venue
- Cell Host & Microbe
- Publisher
- Elsevier BV
- Published
- 2016-04
- Volume
- 19
- Issue
- 4
- Pages
- 443-454
- ISSN
- 1931-3128 (ISSN-L)
- PMC
- PMC4832419
- OpenAlex
- W2338773685
- Cited by
- 864
- References
- 50
- Citations by year
- 2026: 75 · 2025: 93 · 2024: 93 · 2023: 90 · 2022: 115 · 2021: 127 · 2020: 74 · 2019: 70 · 2018: 60 · 2017: 46 · 2016: 18
- FWCI
- 33.77
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell Host & Microbe (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Funders
- National Institutes of Health (T32OD010931, T35OD010956)
- National Institute of General Medical Sciences (R25GM056765)
- National Institute of Allergy and Infectious Diseases (R01AI044170, AI112949, AI103248, R01AI076278, R21AI103248, AI060555, R01AI076246, F31AI112241, AI096528, AI112241, R56AI112949, R21AI117303, R37AI044170, T32AI060555, R01AI112949, R01AI096528)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Agricultural and Biological Sciences › Food Science › Salmonella and Campylobacter epidemiology
- Life Sciences › Immunology and Microbiology › Microbiology › Escherichia coli research studies
- Keywords
- gut microbiota depletion, Salmonella typhimurium, streptomycin, antibiotic-induced dysbiosis, tributyrin, type III secretion system, nitrate reductase, fecal-oral transmission, host-pathogen interaction, commensal bacteria
- MeSH terms
- Gastrointestinal Microbiome, Aerobiosis, Animals, Anti-Bacterial Agents, Bacterial Proteins, Clostridium, Female, Intestines, Mice, Inbred CBA, Mice, Inbred C57BL, Oxygen, Salmonella typhimurium, Streptomycin, Butyric Acid, Virulence Factors, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review