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Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species

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The Global Burden of Nontyphoidal Salmonella Gastroenteritis

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Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine

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Complete genome sequence of Salmonella enterica serovar Typhimurium LT2

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Crosstalk between microbiota-derived short-chain fatty acids and intestinal epithelial HIF augments tissue barrier function

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Gut inflammation provides a respiratory electron acceptor for Salmonella

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Why is the partial oxygen pressure of human tissues a crucial parameter? Small molecules and hypoxia

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Simultaneous Identification of Bacterial Virulence Genes by Negative Selection

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Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data

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Impact of Fiber-Based Enteral Nutrition on the Gut Microbiome of ICU Patients Receiving Broad-Spectrum Antibiotics: A Randomized Pilot Trial

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Reshaping of bacterial molecular hydrogen metabolism contributes to the outgrowth of commensal E. coli during gut inflammation

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New Insights on the Early Interaction Between Typhoid and Non-typhoid Salmonella Serovars and the Host Cells

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Correlation between intestinal flora disruption and protein–energy wasting in patients with end-stage renal disease

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The Significance of the Intestinal Microbiome for Vaccinology: From Correlations to Therapeutic Applications

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Probiotic acoustic biosensors for noninvasive imaging of gut inflammation

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Listeria monocytogenes requires cellular respiration for NAD+ regeneration and pathogenesis

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Butyrate ameliorates inflammation of alcoholic liver disease by suppressing the LPS-TLR4-NF-κB/NLRP3 axis via binding GPR43-β-arrestin2

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Composition of mucus- and digesta-associated bacteria in growing pigs with and without diarrhea differed according to the presence of colonic inflammation

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The TaxUMAP atlas: Efficient display of large clinical microbiome data reveals ecological competition in protection against bacteremia

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Increased Intestinal Permeability: An Avenue for the Development of Autoimmune Disease?

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Association of faecal pH with childhood stunting: Results from a cross-sectional study

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Acute gastrointestinal permeability after traumatic brain injury in mice precedes a bloom in Akkermansia muciniphila supported by intestinal hypoxia

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Gut microbiome and cardiometabolic comorbidities in people living with HIV

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Effects of Differently Processed Tea on the Gut Microbiota

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Intestinal organoid coculture systems: current approaches, challenges, and future directions

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Use of 25-hydroxyvitamin D3 in diets for sows: A review

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Short-term trivalent arsenic and hexavalent chromium exposures induce gut dysbiosis and transcriptional alteration in adipose tissue of mice

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Timing and delivery route effects of cecal microbiome transplants on Salmonella Typhimurium infections in chickens: potential for in-hatchery delivery of microbial interventions

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A MALDI-TOF MS library for rapid identification of human commensal gut bacteria from the class Clostridia

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Red Cabbage Juice-Mediated Gut Microbiota Modulation Improves Intestinal Epithelial Homeostasis and Ameliorates Colitis

Wilson, E. J., Natesh, N. S., Ghadermazi, P., Pothuraju, R., Marudhupandiyan, S., Prajapati, D. R., Pandey, S., Kaifi, J. T., Dodam, J. R., Bryan, J., et al. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms25010539 · Cited by 23

Antibiotic treatment of rat dams affects bacterial colonization and causes decreased weight gain in pups

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Crosstalk between butyrate oxidation in colonocyte and butyrate-producing bacteria

Park, B., Kim, J. Y., Riffey, O. F., Walsh, T. J., Johnson, J., & Donohoe, D. R. (2024) · iScience · doi:10.1016/j.isci.2024.110853 · Cited by 25

What is the collective effect of aging and HIV on the gut microbiome?

Dillon, S. M., & Wilson, C. C. (2019) · Current Opinion in HIV and AIDS · doi:10.1097/coh.0000000000000611 · Cited by 21

Comparative efficacy of spray-dried plasma and bacitracin methylene disalicylate in reducing cecal colonization by Salmonella Enteritidis in broiler chickens

Fasina, Y. O., Obanla, T. O., Ferket, P. R., & Shah, D. H. (2021) · Poultry Science · doi:10.1016/j.psj.2021.101134 · Cited by 20

A Salmonella type III effector, PipA, works in a different manner than the PipA family effectors GogA and GtgA

Takemura, M., Haneda, T., Idei, H., Miki, T., & Okada, N. (2021) · PLoS ONE · doi:10.1371/journal.pone.0248975 · Cited by 20

A Modern-World View of Host–Microbiota–Pathogen Interactions

Tan, C. Y., Ramirez, Z. E., & Surana, N. K. (2021) · The Journal of Immunology · doi:10.4049/jimmunol.2100215 · Cited by 24

Metabolomics: The Key to Unraveling the Role of the Microbiome in Visceral Pain Neurotransmission

Shute, A., Bihan, D. G., Lewis, I. A., & Nasser, Y. (2022) · Frontiers in Neuroscience · doi:10.3389/fnins.2022.917197 · Cited by 21

Communication in non-communicable diseases (NCDs) and role of immunomodulatory nutraceuticals in their management

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Dietary fiber alters immunity and intestinal barrier function of different breeds of growing pigs

Ding, S., Cheng, Y., Azad, M. A. K., Dong, H., He, J., Huang, P., & Kong, X. (2023) · Frontiers in Immunology · doi:10.3389/fimmu.2023.1104837 · Cited by 20

The preventive effects of inulin, cellulose, and their mixture on colorectal cancer liver metastasis in mice by regulating gut microbiota

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Effect of different concentrations of carbonate on growth performance, intestinal health and hepatic lipid metabolism of Crucian carp

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Metabolite-based inter-kingdom communication controls intestinal tissue recovery following chemotherapeutic injury

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Dietary Contamination with a Neonicotinoid (Clothianidin) Gradient Triggers Specific Dysbiosis Signatures of Microbiota Activity along the Honeybee (Apis mellifera) Digestive Tract

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Citrobacter amalonaticus Inhibits the Growth of Citrobacter rodentium in the Gut Lumen

Mullineaux-Sanders, C., Carson, D., Hopkins, E. G. D., Glegola-Madejska, I., Escobar‐Zepeda, A., Browne, H. P., Lawley, T. D., & Frankel, G. M. (2021) · mBio · doi:10.1128/mbio.02410-21 · Cited by 20

Exposing the Two Contrasting Faces of STAT2 in Inflammation

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Anaerobic respiration of host-derived methionine sulfoxide protects intracellular Salmonella from the phagocyte NADPH oxidase

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Quorum Sensing and the Gut Microbiome

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Aerobic Metabolism in Vibrio cholerae Is Required for Population Expansion during Infection

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Effects of Clostridium butyricum on intestinal environment and gut microbiome under Salmonella infection

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Ingestible capsule for detecting labile inflammatory biomarkers in situPreprint

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Metabolic tug-of-war: Microbial metabolism shapes colonization resistance against enteric pathogens

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Heme in Bacterial Pathogenesis and as an Antimicrobial Target

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Effect of bile salt hydrolase-activeLactobacillus plantarumY15 on high cholesterol diet induced hypercholesterolemic mice

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Multi-omics provide mechanistic insight into the Pb-induced changes in tadpole fitness-related traits and environmental water quality

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Sugar-Phosphate Toxicities Attenuate Salmonella Fitness in the Gut

Boulanger, E. F., Sabag-Daigle, A., Baniasad, M., Kokkinias, K., Schwieters, A., Wrighton, K. C., Wysocki, V. H., & Ahmer, B. M. M. (2022) · Journal of Bacteriology · doi:10.1128/jb.00344-22 · Cited by 17

Impact of feeding dried distillers’ grains with solubles diet on microbiome and metabolome of ruminal and cecal contents in Guanling yellow cattle

Song, C., Zhang, T., Xu, D., Zhu, M., Mei, S., BiJun, Z., KaiGong, W., Chen, C., Zhu, E., & Cheng, Z. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1171563 · Cited by 20

Liberation of host heme by Clostridioides difficile- mediated damage enhances Enterococcus faecalis fitness during infection

Smith, A. B., Specker, J. T., Hewlett, K. K., Scoggins, T. R., Knight, M., Lustig, A. M., Li, Y., Evans, K. M., Guo, Y., She, Q., et al. (2023) · mBio · doi:10.1128/mbio.01656-23 · Cited by 17

Unraveling the gut health puzzle: exploring the mechanisms of butyrate and the potential of High-Amylose Maize Starch Butyrate (HAMSB) in alleviating colorectal disturbances

Cheng, J., & Zhou, J. (2024) · Frontiers in Nutrition · doi:10.3389/fnut.2024.1285169 · Cited by 18

Emerging tools and best practices for studying gut microbial community metabolism

Noecker, C. A., & Turnbaugh, P. J. (2024) · Nature Metabolism · doi:10.1038/s42255-024-01074-z · Cited by 20

Seeing is understanding: Salmonella’s way to penetrate the intestinal epithelium

Zhang, K., Griffiths, G. W., Repnik, U., & Hornef, M. W. (2017) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2017.09.011 · Cited by 18

Resource Competition and Host Feedbacks Underlie Regime Shifts in Gut Microbiota

Guittar, J. L., Koffel, T., Shade, A. L., Klausmeier, C. A., & Litchman, E. (2021) · The American Naturalist · doi:10.1086/714527 · Cited by 17

Relative Effects of Dietary Administration of a Competitive Exclusion Culture and a Synbiotic Product, Age and Sampling Site on Intestinal Microbiota Maturation in Broiler Chickens

Such, N., Farkas, V., Csitári, G., Pál, L., Márton, A., Menyhárt, L., & Dublecz, K. (2021) · Veterinary Sciences · doi:10.3390/vetsci8090187 · Cited by 19

Well-construction of Zn2SnO4/SnO2@ZIF-8 core–shell hetero-structure with efficient photocatalytic activity towards tetracycline under restricted space

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Bugs, drugs, and cancer: can the microbiome be a potential therapeutic target for cancer management?

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A Few Good Commensals: Gut Microbes Use IFN-γ to Fight Salmonella

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Suppressing Alpha-Hemolysin as Potential Target to Screen of Flavonoids to Combat Bacterial Coinfection

He, S., Deng, Q., Liang, B., Yu, F., Yu, X., Guo, D., Liu, X., & Dong, H. (2021) · Molecules · doi:10.3390/molecules26247577 · Cited by 17

Nonredundant Dimethyl Sulfoxide Reductases Influence Salmonella enterica Serotype Typhimurium Anaerobic Growth and Virulence

Cruz, E., Haeberle, A. L., Westerman, T. L., Durham, M. E., Suyemoto, M. M., Knodler, L. A., & Elfenbein, J. R. (2023) · Infection and Immunity · doi:10.1128/iai.00578-22 · Cited by 17

Peimisine ameliorates DSS-induced colitis by suppressing Jak–Stat activation and alleviating gut microbiota dysbiosis in mice

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Epithelial-microbial diplomacy: escalating border tensions drive inflammation in inflammatory bowel disease

King, S. J., & McCole, D. F. (2019) · Intestinal Research · doi:10.5217/ir.2018.00170 · Cited by 18

CRTAM Shapes the Gut Microbiota and Enhances the Severity of Infection

Pérez-López, A., Nuccio, S., Ushach, I., Edwards, R. A., Pahu, R., Silva, S., Zlotnik, A., & Raffatellu, M. (2019) · The Journal of Immunology · doi:10.4049/jimmunol.1800890 · Cited by 16

The Small Protein CydX Is Required for Cytochrome bd Quinol Oxidase Stability and Function in Salmonella enterica Serovar Typhimurium: a Phenotypic Study

Duc, K. M., Kang, B. G., Lee, C., Park, H. J., Park, Y. M., Joung, Y. H., & Bang, I. S. (2019) · Journal of Bacteriology · doi:10.1128/jb.00348-19 · Cited by 17

Disequilibrium in chicken gut microflora with avian colibacillosis is related to microenvironment damaged by antibiotics

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MicroRNA‐microbiota interactions: Emerging strategies for modulating intestinal homeostasis and enhancing host health

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Deciphering oxidative stress responses in human gut microbes and fecal microbiota: a cultivation-based approach

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Hydrogen sulfide‐mediated resistance against water avoidance stress‐induced gastritis by maintenance of gastric microbial homeostasis

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IL-18 maintains the homeostasis of mucosal immune system via inflammasome-independent but microbiota-dependent manner

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A mixture of quebracho and chestnut tannins drives butyrate-producing bacteria populations shift in the gut microbiota of weaned piglets

Miragoli, F., Patrone, V., Prandini, A., Sigolo, S., Dell’Anno, M., Rossi, L., Barbato, M., Senizza, A., Morelli, L., & Callegari, M. L. (2021) · PLoS ONE · doi:10.1371/journal.pone.0250874 · Cited by 18

Response of Mycobacterium smegmatis to the Cytochrome bcc Inhibitor Q203

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Formate oxidation in the intestinal mucus layer enhances fitness of Salmonella enterica serovar Typhimurium

Winter, M. G., Hughes, E. R., Muramatsu, M. K., Jimenez, A. G., Chanin, R. B., Spiga, L., Gillis, C. C., McClelland, M., Andrews‐Polymenis, H. L., & Winter, S. (2023) · mBio · doi:10.1128/mbio.00921-23 · Cited by 15

Comprehensive insight into the alterations in the gut microbiome and the intestinal barrier as a consequence of iron deficiency anaemia

Soriano‐Lerma, A., García‐Burgos, M., Barton, W., Alférez, M. J. M., Crespo-Pérez, J. V., Soriano, M., López‐Aliaga, I., Cotter, P. D., & Garcia-Salcedo, J. A. (2024) · Biomedical Journal · doi:10.1016/j.bj.2024.100701 · Cited by 16

Reconstituting gut microbiota-colonocyte interactions reverses diet-induced cognitive deficits: The beneficial of eucommiae cortex polysaccharides

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Exploring the potential of mannan oligosaccharides in enhancing animal growth, immunity, and overall health: A review

Sharma, N. (2024) · Carbohydrate Polymer Technologies and Applications · doi:10.1016/j.carpta.2024.100603 · Cited by 16

Replacement of Metaphylactic Antimicrobial Therapy by Oral Administration of Ligilactobacillus salivarius MP100 in a Pig Farm

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What’s for dinner? How Citrobacter rodentium’s metabolism helps it thrive in the competitive gut

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Vibrio cholerae requires oxidative respiration through the bd-I and cbb3 oxidases for intestinal proliferation

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Hydrolyzed chicken liver used as single source of animal protein in diet and its effect on cytokines, immunoglobulins, and fecal microbiota profile of adult dogs

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Crohn’s Disease Differentially Affects Region-Specific Composition and Aerotolerance Profiles of Mucosally Adherent Bacteria

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Interplay between chemotaxis, quorum sensing, and metabolism regulates Escherichia coli-Salmonella Typhimurium interactions in vivo

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Gene-level analysis of core carbohydrate metabolism across the Enterobacteriaceae pan-genome

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Commensal microbe-derived butyrate enhances T follicular helper cell function to boost mucosal vaccine efficacy

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Molecular determinants of peaceful coexistence versus invasiveness of non-Typhoidal Salmonella: Implications in long-term side-effects

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Effect of diet on pathogen performance in the microbiome

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Gastrointestinal dysbiosis and Escherichia coli pathobionts in inflammatory bowel diseases

Petersen, A. M. (2022) · Apmis · doi:10.1111/apm.13256 · Cited by 18

Modulation of Host-Microbe Metabolism by Cholera Toxin

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Unveiling the novel regulatory roles of RpoD-family sigma factors in Salmonella Typhimurium heat shock response through systems biology approaches

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Taming the Beast: Interplay between Gut Small Molecules and Enteric Pathogens

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Western lifestyle as a driver of dysbiosis in colorectal cancer

Foegeding, N. J., Jones, Z., & Byndloss, M. X. (2021) · Disease Models & Mechanisms · doi:10.1242/dmm.049051 · Cited by 14

Gut microbiota carbon and sulfur metabolisms support Salmonella infections

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Mechanisms conferring multi-layered protection against intestinal Salmonella Typhimurium infection

Kroon, S., & Hardt, W. (2025) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuaf038 · Cited by 14

Gut microbial metabolites in inflammatory bowel disease: immunological mechanisms regulating Treg/Th17 balance and therapeutic potential

Chen, H., Yu, S., Zhang, M., Tian, B., Yang, L., & Lu, J. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1780865 · Cited by 15

The metabolic impact of bacterial infection in the gut

Chaukimath, P., Frankel, G. M., & Visweswariah, S. S. (2022) · FEBS Journal · doi:10.1111/febs.16562 · Cited by 14

Fumarate, a central electron acceptor for Enterobacteriaceae beyond fumarate respiration and energy conservation

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Temporal dynamics of fecal microbiota community succession in broiler chickens, calves, and piglets under aerobic exposure

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Dietary amino acids regulate Salmonella colonization via microbiota-dependent mechanisms in the mouse gut

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Transcriptome Analysis of the Cecal Tonsil of Jingxing Yellow Chickens Revealed the Mechanism of Differential Resistance to Salmonella

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Gut microbiome and metabolic response in non-alcoholic fatty liver disease

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Possible regulation of liver glycogen structure through the gut-liver axis by resistant starch: a review

Hu, Y., Li, C., & Hou, Y. (2021) · Food & Function · doi:10.1039/d1fo02416g · Cited by 14

Fecal microbiota transplantation in a rodent model of short bowel syndrome: A therapeutic approach?

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Exposing new taxonomic variation with inflammation — a murine model-specific genome database for gut microbiome researchers

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Salmonella breathe out Clostridia

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Breathless in the Gut: Implications of Luminal O 2 for Microbial Pathogenicity

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Depletion of Microbiota-derived Butyrate Drives Aerobic Salmonella Expansion That Ensures Transmission

Bäumler, A. J. (2016) · IAFP 2016 Annual Meeting

Effects of Clostridium butyricum on intestinal environment and gut microbiome under Salmonella infection

Zhang, X., Song, M., Lv, P., Hao, G., & Sun, S. (2022) · Poultry Science · doi:10.1016/j.psj.2022.102077 · Cited by 19

Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens

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