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Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species

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Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

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The Global Burden of Nontyphoidal Salmonella Gastroenteritis

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Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine

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Complete genome sequence of Salmonella enterica serovar Typhimurium LT2

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Crosstalk between microbiota-derived short-chain fatty acids and intestinal epithelial HIF augments tissue barrier function

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Gut inflammation provides a respiratory electron acceptor for Salmonella

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Why is the partial oxygen pressure of human tissues a crucial parameter? Small molecules and hypoxia

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Simultaneous Identification of Bacterial Virulence Genes by Negative Selection

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Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data

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Applying the design-build-test paradigm in microbiome engineering

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Prevalence of Salmonella in Free-Range Pigs: Risk Factors and Intestinal Microbiota Composition

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High-Density Lipoprotein Cholesterol as a Potential Medium between Depletion ofLachnospiraceaeGenera and Hypertension under a High-Calorie Diet

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The long-term gut bacterial signature of a wild primate is associated with a timing effect of pre- and postnatal maternal glucocorticoid levels

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IUPHAR review: From gut to brain: The role of gut dysbiosis, bacterial amyloids, and metabolic disease in Alzheimer’s disease

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Leveraging strain competition to address antimicrobial resistance with microbiota therapies

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Altered Patterns of Compositional and Functional Disruption of the Gut Microbiota in Typhoid Fever and Nontyphoidal Febrile Illness

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Antibiotics Modulate Intestinal Regeneration

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Next-generation probiotics

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The Combination of Phages and Faecal Microbiota Transplantation Can Effectively Treat Mouse Colitis Caused by Salmonella enterica Serovar Typhimurium

Wang, X., Xing, Y., Ji, Y., Xi, H., Liu, X., Yang, L., Lei, L., Han, W., & Gu, J. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.944495 · Cited by 15

Preparations of Terminal Oxidase Cytochrome bd-II Isolated from Escherichia coli Reveal Significant Hydrogen Peroxide Scavenging Activity

Forte, E., Nastasi, M. R., & Borisov, V. B. (2022) · Biochemistry (Moscow) · doi:10.1134/s0006297922080041 · Cited by 13

Alterations of gut microbiota and its correlation with the liver metabolome in the process of ameliorating Parkinson's disease with Buyang Huanwu decoction

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Flaxseed diet caused inflammation by altering the gut microbiota of Peking ducks

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Commensal regulation of T cell survival through Erdr1

Weis, A. M., Soto, R. A., & Round, J. L. (2018) · Gut Microbes · doi:10.1080/19490976.2018.1441662 · Cited by 13

Ecology of the gut microbiota and colonization resistance: mechanisms and therapeutic implications

Liang, L., Yang, Z., & Fu, X. (2025) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiaf124 · Cited by 14

Malaria parasite infection compromises colonization resistance to an enteric pathogen by reducing gastric acidity

Walker, G. T., Yang, G., Tsai, J. Y., Rodriguez, J. L., English, B. C., Faber, F., Souvannaseng, L., Butler, B. P., & Tsolis, R. M. (2021) · Science Advances · doi:10.1126/sciadv.abd6232 · Cited by 12

Physical Activity as an Adjunct Treatment for People Living with HIV?

Enichen, E. J., Adams, R. B., & Demmig‐Adams, B. (2022) · American Journal of Lifestyle Medicine · doi:10.1177/15598276221078222 · Cited by 15

Dietary α-linolenic acid supplementation enhances resistance to Salmonella Typhimurium challenge in chickens by altering the intestinal mucosal barrier integrity and cecal microbes

Ma, B., Wang, D., Chen, X., Wang, Q., Zhang, T., Wen, R., Yang, M., Cui, L., Lei, C., & Wang, H. (2024) · Microbiological Research · doi:10.1016/j.micres.2024.127773 · Cited by 13

Spatiotemporal dynamics during niche remodeling by super-colonizing microbiota in the mammalian gut

Urtecho, G., Moody, T. U., Huang, Y., Sheth, R. U., Richardson, M., Descamps, H. C., Kaufman, A., Lekan, O., Zhang, Z., Velez‐Cortes, F., et al. (2024) · Cell Systems · doi:10.1016/j.cels.2024.10.007 · Cited by 14

Synbiotics Supplements Lower the Risk of Hand, Foot, and Mouth Disease in Children, Potentially by Providing Resistance to Gut Microbiota Dysbiosis

Guo, X., Lan, Z., Wen, Y., Zheng, C., Rong, Z., Liu, T., Chen, S., Yang, X., Zheng, H., & Wu, W. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.729756 · Cited by 12

Role of Resident Microbial Communities in Biofilm-Related Implant Infections: Recent Insights and Implications

Serbanescu, M. A., Apple, C. G., & Fernandez-Moure, J. S. (2023) · Surgical Infections · doi:10.1089/sur.2023.009 · Cited by 12

A host metabolite promotes Salmonella survival

Lynch, J. P., & Lesser, C. F. (2021) · Science · doi:10.1126/science.abf8414 · Cited by 12

The Role of Surgical and Perioperative Factors in Shaping Gut Microbiome Recovery After Colorectal Surgery

Kohn, J. F., Troester, A. M., Ziegert, Z., Frebault, J., Boatman, S. M., Martell, M., Nalluri, H., Bobel, M. C., Goffredo, P., Johnson, A. J., et al. (2025) · Antibiotics · doi:10.3390/antibiotics14090881 · Cited by 15

Interference of gastrointestinal barriers with antibiotic susceptibility of foodborne pathogens: an in vitro case study of ciprofloxacin and tetracycline against Salmonella enterica and Listeria monocytogenes

Gaspari, S., Akkermans, S., Akritidou, T., Whelan, R., Devine, F., & van Impe, J. F. M. (2024) · Food Research International · doi:10.1016/j.foodres.2024.114491 · Cited by 11

Interplay of niche and respiratory network in shaping bacterial colonization

Srivastav, S., Biswas, A., & Anand, A. (2024) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2024.108052 · Cited by 10

E. coli genetically modified for purine nucleobase release promotes butyrate generation and colonic wound healing during DSS insult

Lee, J. S., Kao, D. J., Worledge, C. S., Villamaria, Z. F., Wang, R. X., Welch, N., Kostelecky, R. E., & Colgan, S. P. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2490211 · Cited by 12

Genomic and functional characterization of a Butyricicoccus porcorum strain isolated from human gut microbiota

Zhao, N., Geng, P., Perez, A. G., Maya, A. C., Yadav, B. S., Du, Y., & Ge, Y. (2025) · mSystems · doi:10.1128/msystems.00790-25 · Cited by 12

Closely related Salmonella Derby strains triggered distinct gut microbiota alteration

Yuan, X., Xue, H., Xu, X., Jiao, X., Pan, Z., & Zhang, Y. (2022) · Gut Pathogens · doi:10.1186/s13099-022-00480-6 · Cited by 12

Gut Microbiota Resilience Mechanisms Against Pathogen Infection and its Role in Inflammatory Bowel Disease

Cipelli, M., da Silva, E. M., & Câmara, N. O. S. (2023) · Current Clinical Microbiology Reports · doi:10.1007/s40588-023-00207-4 · Cited by 11

Translation of Microbiota Short-Chain Fatty Acid Mechanisms Affords Anti-infective Acyl-Salicylic Acid Derivatives

Yang, X., Forster, E. R., Darabedian, N., Kim, A. T., Pratt, M. R., Shen, A., & Hang, H. C. (2020) · ACS Chemical Biology · doi:10.1021/acschembio.9b01009 · Cited by 11

From bugs to behavior: targeting the gut-brain interface for addiction therapeutics

Ru, Y., Jia, J., Yang, X., Ba, X., Yan, J., Zhang, H., & Zhang, Y. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2569740 · Cited by 10

Phenotype Alterations in the Cecal Ecosystem Involved in the Asymptomatic Intestinal Persistence of Paratyphoid Salmonella in Chickens

Kogut, M. H., & Fernández-Miyakawa, M. E. (2023) · Animals · doi:10.3390/ani13182824 · Cited by 11

Hypoxic Functional Regulation Pathways in the GI Tract: Focus on the HIF-1α and Microbiota’s Crosstalk

Mattia, M. D., Sallese, M., Neri, M., & Lopetuso, L. R. (2024) · Inflammatory Bowel Diseases · doi:10.1093/ibd/izae046 · Cited by 13

Preservation of conjugated primary bile acids by oxygenation of the small intestinal microbiota in vitro

Firrman, J., Friedman, E. S., Hecht, A. L., Strange, W. C., Narrowe, A. B., Mahalak, K. K., Wu, G. D., & Liu, L. (2024) · mBio · doi:10.1128/mbio.00943-24 · Cited by 10

The prebiotic potential of dietary onion extracts: shaping gut microbial structures and promoting beneficial metabolites

Yoo, Y., Kim, S., Lee, W., Kim, J., Son, B., Lee, K. J., & Shin, H. (2024) · mSystems · doi:10.1128/msystems.01189-24 · Cited by 10

Antimicrobial peptide AP2 ameliorates Salmonella Typhimurium infection by modulating gut microbiota

Li, L., Fu, A., Mo, Q., Wan, Y., Zhou, Y., Zeng, Z., Shan, A., Zhang, X., Li, W., & Li, W. (2025) · BMC Microbiology · doi:10.1186/s12866-025-03776-0 · Cited by 11

Commensal resilience: ancient ecological lessons for the modern microbiota

Rose, A. E., Fansler, R. T., & Zhu, W. (2025) · Infection and Immunity · doi:10.1128/iai.00502-24 · Cited by 12

Mucosal tolerance therapy in humans: Past and future

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Timing of Tributyrin Supplementation Differentially Modulates Gastrointestinal Inflammation and Gut Microbial Recolonization Following Murine Ileocecal Resection

Mocanu, V., Park, H., Dang, J. T., Hotte, N., Thiesen, A., Laffin, M., Wang, H., Birch, D. W., & Madsen, K. L. (2021) · Nutrients · doi:10.3390/nu13062069 · Cited by 10

Efficiency of Chinese medicine Bushen Huatan formula for treatment of polycystic ovary syndrome in mice via regulating gut microbiota and PPARγ pathway

Cui, M., Hong, Y., Huang, J., Liu, K., Chen, J., Tan, Y., & Nie, X. (2023) · Journal of Zhejiang University (Medical Sciences) · doi:10.3724/zdxbyxb-2022-0456 · Cited by 10

Salmonella manipulates the host to drive pathogenicity via induction of interleukin 1β

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Cytochrome oxidase requirements in Bordetella reveal insights into evolution towards life in the mammalian respiratory tract

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Shaping the human gut microbiota: The role of canine companionship, lifestyle choices, and Blastocystis sp.

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Omega-3 polyunsaturated fatty acids attenuate cognitive impairment via the gut-brain axis in diabetes-associated cognitive dysfunction rats

Huang, H., Zhao, T., & Ma, W. (2025) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2025.03.015 · Cited by 9

Bloodstream infection by Lactobacillus rhamnosus in a haematology patient: why metagenomics can make the difference

Mannavola, C. M., Maio, F. D., Marra, J. D., Fiori, B., Santarelli, G., Posteraro, B., Sica, S., D’Inzeo, T., & Sanguinetti, M. (2025) · Gut Pathogens · doi:10.1186/s13099-025-00722-3 · Cited by 9

Insights from metagenomics on microbial biosynthesis of vitamins B and K2 in chicken gut microbiota

Yu, H., Hou, X.-W., Zhao, J., Liu, G., Meng, J., Wei, Y.-J., Cai, Y., Liu, J., Shang, K.-M., Ni, H.-B., et al. (2025) · Frontiers in Veterinary Science · doi:10.3389/fvets.2025.1646825 · Cited by 9

Hyperoxia as a driver of gut dysbiosis

Wu, H., Zeng, W., Dai, N., Gu, J., He, Y., Qin, H., Lin, L., Fu, X., Fu, B., & Xing, Z. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1675652 · Cited by 11

Friend or foe? Contextualizing Bacteroides through the lens of niche remodeling

Fansler, R. T., Wu, Y., & Zhu, W. (2025) · Trends in Microbiology · doi:10.1016/j.tim.2025.11.005 · Cited by 9

Ignored roles of gases in digestive diseases

Zhao, C., Liu, R., Zhou, Y., Zheng, R., Shen, Y., Wen, B., Zhang, B., & Che, J. (2023) · Biomedical Technology · doi:10.1016/j.bmt.2022.11.014 · Cited by 9

Lacticaseibacillus rhamnosus ATCC 53103 and Limosilactobacillus reuteri ATCC 53608 Synergistically Boost Butyrate Levels upon Tributyrin Administration Ex Vivo

den Abbeele, P. V., Goggans, M. L., Deyaert, S., Baudot, A., de Vliet, M. V., Calatayud, M., & Lelah, M. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24065859 · Cited by 9

A secreted sirtuin from Campylobacter jejuni contributes to neutrophil activation and intestinal inflammation during infection

Callahan, S. M., Hancock, T. J., Doster, R. S., Parker, C. B., Wakim, M. E., Gaddy, J. A., & Johnson, J. G. (2023) · Science Advances · doi:10.1126/sciadv.ade2693 · Cited by 11

Salmonella enterica induces biogeography-specific changes in the gut microbiome of pigs

Neto, J. C. G., Pavlovikj, N., Korth, N., Naberhaus, S. A., Arruda, B. L., Benson, A. K., & Kreuder, A. J. (2023) · Frontiers in Veterinary Science · doi:10.3389/fvets.2023.1186554 · Cited by 9

Clostridioides difficile superoxide reductase mitigates oxygen sensitivity

Kochanowsky, R., Carothers, K. E., Roxas, B. P., Anwar, F., Viswanathan, V. K., & Vedantam, G. (2024) · Journal of Bacteriology · doi:10.1128/jb.00175-24 · Cited by 9

Paeoniflorin Derivative in Paeoniae Radix Aqueous Extract Suppresses Alpha-Toxin of Staphylococcus aureus

Liu, X., Zhang, Y., Li, Z., Zhang, P., Sun, Y., & Wu, Y. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.649390 · Cited by 9

The Impact of Gut Microbiota on Post-Stroke Management

Zhao, J., Liu, S., Yan, J., & Zhu, X. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.724376 · Cited by 11

Diet-mediated metaorganismal relay biotransformation: health effects and pathways

Li, Y., Cao, H., Wang, X., Guo, L., Ding, X., Zhao, W., & Zhang, F. (2021) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2021.2004993 · Cited by 9

Protectors of the Neonatal Gut: Clostridia Send Pathogens Packing

Behnsen, J. (2017) · Cell Host & Microbe · doi:10.1016/j.chom.2017.06.002 · Cited by 8

LACTATEing Salmonella: A Host-Derived Fermentation Product Fuels Pathogen Growth

Stecher, B., & Jung, K. (2018) · Cell Host & Microbe · doi:10.1016/j.chom.2017.12.012 · Cited by 8

Research advances on short-chain fatty acids in gastrointestinal acute graft- versus -host disease

Song, X., Lao, J., Wang, L., & Liu, S. (2024) · Therapeutic Advances in Hematology · doi:10.1177/20406207241237602 · Cited by 9

The respiratory chain of Klebsiella aerogenes in urine-like conditions: critical roles of NDH-2 and bd-terminal oxidases

González-Montalvo, M. A., Sorescu, J. M., Baltes, G., Juárez, O. X., & Tuz, K. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1479714 · Cited by 8

Recent Insights into the Evolving Role of the Gut Microbiome in Critical Care

Lee, S., Wischmeyer, P. E., Mintz, C. D., & Serbanescu, M. A. (2024) · Critical Care Clinics · doi:10.1016/j.ccc.2024.11.002 · Cited by 11

An anaerobic pathogen rewires host metabolism to fuel oxidative growth in the inflamed gut

Spiga, L., Fansler, R. T., Wu, Y., Grote, A., Langford-Butler, M., Miller, A. K., Neal, M. J., Hale, O. F., Singla, D., Calcutt, M. W., et al. (2026) · Cell · doi:10.1016/j.cell.2026.04.012 · Cited by 8

Butyrate Selectively Targets Super‐Enhancers and Transcriptional Networks Associated with Human Mast Cell Function

Folkerts, J., de Bruijn, M. J. W., van IJcken, W. F. J., Hendriks, R. W., & Stadhouders, R. (2025) · European Journal of Immunology · doi:10.1002/eji.202451680 · Cited by 11

Salmonella Typhi gut invasion drives hypoxic immune subsets associated with disease outcomes

Moshe, N. B. B., Hen‐Avivi, S., Levy-Efrati, L., Veinman, L., Hill, J. W., O’Connor, D., Verheul, M. K., Stockdale, L. K., McLean, F., Pollard, A. J., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-62136-8 · Cited by 9

Intestinal luminal polyamines support the gut colonization of enteric bacterial pathogens by modulating flagellar motility and nitrate respiration

Miki, T., Kurihara, S., Uemura, T., Ami, Y., Ito, M., Haneda, T., Furuchi, T., Okada, N., Minamino, T., & Kim, Y. (2025) · mBio · doi:10.1128/mbio.01786-25 · Cited by 8

Klebsiella ARO112 promotes microbiota recovery, pathobiont clearance and prevents inflammation in IBD mice

Cabral, V., Oliveira, R. A., Correia, M. B., Pedro, M. F., Garcia‐Garcerà, M., Úbeda, C., & Xavier, K. B. (2025) · Nature Communications · doi:10.1038/s41467-025-67015-w · Cited by 11

Genetic heterogeneity of colorectal cancer and the microbiome

Senchukova, M. A. (2023) · World Journal of Gastrointestinal Oncology · doi:10.4251/wjgo.v15.i3.443 · Cited by 9

Corn silk extract alleviate type 1 diabetes via regulating gut microbiota and inflammation

Yang, B., Zhu, D., Chen, Y., Xu, Y., Yang, Y.-J., Zeng, J., Liang, Y. S., He, M., Jia, X., & Feng, L. (2024) · Journal of Functional Foods · doi:10.1016/j.jff.2023.105969 · Cited by 8

The Role of Gut Microbiota and Associated Compounds in Cardiovascular Health and its Therapeutic Implications

Liu, L., Kaur, G. I. J., Kumar, A., Kanwal, A., & Singh, S. P. (2024) · Cardiovascular & Hematological Agents in Medicinal Chemistry · doi:10.2174/0118715257273506231208045308 · Cited by 8

Plasma Metabolites as Mediators Between Gut Microbiota and Parkinson’s Disease: Insights from Mendelian Randomization

Chen, J., Zhu, L., Wang, F., Zhu, Y., Chen, J., Liang, C., Liu, B., Pang, A., & Yang, X. (2025) · Molecular Neurobiology · doi:10.1007/s12035-025-04765-0 · Cited by 9

Potential type 2 diabetes mellitus drug HMPA promotes short‐chain fatty acid production by improving carbon catabolite repression effect of gut microbiota

Liu, H., Qin, Y., Li, K., Li, M., Yang, J., Tao, H., Tang, Y., Yang, L., Chen, S., Liu, Y., et al. (2020) · British Journal of Pharmacology · doi:10.1111/bph.15338 · Cited by 8

A chemically-defined growth medium to support Lactobacillus-Acetobacter sp. community analysis

Aumiller, K., Scheffler, R. J., Stevens, E. T., Güvener, Z. T., Tung, E., Grimaldo, A. B. G., Carlson, H. K., Deutschbauer, A. M., Taga, M. E., Marco, M. L., et al. (2023) · PLoS ONE · doi:10.1371/journal.pone.0292585 · Cited by 8

Analysis of the endophytic microbiota of roots and culms of two commercial sugarcane cultivars inoculated with a synthetic microbial community

Schwab, S., Pires, A. D. S., Candido, G. Z., Júnior, O. J. S., Reis, V. M., & Cruz, L. M. (2023) · Applied Soil Ecology · doi:10.1016/j.apsoil.2023.105235 · Cited by 8

Maternal effects on early-life gut microbiome maturation in a wild nonhuman primatePreprint

Baniel, A., Petrullo, L. A., Mercer, A., Reitsema, L. J., Sams, S. N., Beehner, J. C., Bergman, T. J., Snyder‐Mackler, N., & Lu, A. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.11.06.467515 · Cited by 8

Effects of Chenpi (Citrus reticulata cv. Chachiensis) on serum antioxidant enzymes, inflammatory factors, and intestinal health in Beagle dogs

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