The genetic code of the fungal CTG clade
Open accessAbstract
Genetic code alterations discovered over the last 40 years in bacteria and eukaryotes invalidate the hypothesis that the code is universal and frozen. Mitochondria of various yeast species translate the UGA stop codon as tryptophan (Trp) and leucine (Leu) CUN codons (N = any nucleotide) as threonine (Thr) and fungal CTG clade species reassigned Leu CUG codons to serine and translate them ambiguously in their cytoplasms. This unique sense-to-sense genetic code alteration is mediated by a Ser-tRNA containing a Leu 5’-CAG-3’anticodon (ser-tRNA CAG ), which is recognized and charged with Ser (∼97%) by the seryl-tRNA synthetase (SerRS) and with Leu (∼3%) by the leucyl-tRNA synthetase (LeuRS). This unusual tRNA appeared 272 ± 25 million years ago and had a profound impact on the evolution of the CTG clade species. Here, we review the most recent results and concepts arising from the study of this codon reassignment and we highlight how its study is changing our views of the evolution of the genetic code.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
C. auris and C. albicans are related closely enough to share the same noncanonical genetic code.
“particularly for species related closely enough to share the same noncanonical genetic code40,41.”
From The emerging fungal pathogen <i>Candida auris</i> induces IFNγ to colonize mammalian hair follicles (2025) · cites this paper as [40]
Cites
Global analysis of protein expression in yeast
Ghaemmaghami, S., Huh, W.-K., Bower, K., Howson, R. W., Belle, A., Dephoure, N., O'Shea, E. K., & Weissman, J. S. (2003) · Nature · doi:10.1038/nature02046 · Cited by 3,750 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Candida auris: Epidemiology, biology, antifungal resistance, and virulence
Du, H., Bing, J., Hu, T., Ennis, C. L., Nobile, C. J., & Huang, G. (2020) · PLOS Pathogens · doi:10.1371/journal.ppat.1008921 · Cited by 609 · see citing works
Evolutionary genomics of yeast pathogens in the Saccharomycotina
Gabaldón, T., Naranjo-Ortíz, M. A., & Marcet-Houben, M. (2016) · FEMS Yeast Research · doi:10.1093/femsyr/fow064 · Cited by 105 · see citing works
Gabaldón, T., & Carreté, L. (2016) · FEMS Yeast Research · doi:10.1093/femsyr/fov110 · Cited by 99 · see citing works
Tscherner, M., Zwolanek, F., Jenull, S., Sedlazeck, F. J., Petryshyn, A., Frohner, I. E., Mavrianos, J., Chauhan, N., von Haeseler, A., & Kuchler, K. (2015) · PLOS Pathogens · doi:10.1371/journal.ppat.1005218 · Cited by 57 · see citing works
Unique, Diverged, and Conserved Mitochondrial Functions Influencing Candida albicans Respiration
Sun, N., Parrish, R. S., Calderone, R. A., & Fonzi, W. A. (2019) · mBio · doi:10.1128/mbio.00300-19 · Cited by 51 · see citing works
Multi-omics characterization of the necrotrophic mycoparasite Saccharomycopsis schoenii
Junker, K., Chailyan, A., Hesselbart, A., Forster, J., & Wendland, J. (2019) · PLOS Pathogens · doi:10.1371/journal.ppat.1007692 · Cited by 34 · see citing works
Nanotechnology-Based Strategies to Combat Multidrug-Resistant Candida auris Infections
Hetta, H. F., Ramadan, Y. N., Al-Kadmy, I. M. S., Ellah, N. H. A., Shbibe, L., & Battah, B. (2023) · Pathogens · doi:10.3390/pathogens12081033 · Cited by 24 · see citing works
Cha, H., Won, D., & Bahn, Y.-S. (2025) · mBio · doi:10.1128/mbio.02475-23 · Cited by 19 · see citing works
Mamouei, Z., Singh, S., Lemire, B., Gu, Y., Alqarihi, A., Nabeela, S., Li, D., Ibrahim, A., & Uppuluri, P. (2021) · PLOS Biology · doi:10.1371/journal.pbio.3000957 · Cited by 19 · see citing works
The emerging fungal pathogen <i>Candida auris</i> induces IFNγ to colonize mammalian hair follicles
Merrill, E. D., Prudent, V., Moghadam, P., Rodriguez, A., Hurabielle, C., Wells, E. K. C., Basso, P., Scharschmidt, T. C., Rosenblum, M. D., Molofsky, A. B., et al. (2025) · doi:10.1101/2025.01.15.632653 · Cited by 4 · see citing works
- Authors
- Santos, M. A. S., Gomes, A. C., Santos, M. C., Carreto, L. C., & Moura, G. R.
- Affiliations
- University of Aveiro (PT)
- Corresponding author
- Santos, Manuel A.S.
- Venue
- Comptes Rendus. Biologies
- Publisher
- MathDoc/Centre Mersenne
- Published
- 2011-07-02
- Volume
- 334
- Issue
- 8-9
- Pages
- 607-611
- ISSN
- 1631-0691 (ISSN-L)
- 1768-3238
- OpenAlex
- W2170087779
- Cited by
- 110
- References
- 1
- Citations by year
- 2026: 6 · 2025: 7 · 2024: 5 · 2023: 14 · 2022: 10 · 2021: 13 · 2020: 4 · 2019: 6 · 2018: 8 · 2017: 7 · 2016: 8 · 2015: 5 · 2014: 4 · 2013: 9 · 2012: 3
- FWCI
- 2.21
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Comptes Rendus Biologies (publishedVersion)
- PubMed (publishedVersion)
- Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA modifications and cancer
- Physical Sciences › Physics and Astronomy › Astronomy and Astrophysics › Origins and Evolution of Life
- Keywords
- genetic code evolution, codon reassignment, serine tRNA, seryl-tRNA synthetase, leucyl-tRNA synthetase, fungal evolution
- MeSH terms
- Amino Acids, Codon, Cytoplasm, Fungi, Genetic Code, Proteomics
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review