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Complete Genomes Reveal Signatures of Demographic and Genetic Declines in the Woolly Mammoth
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Complete genome of late-surviving woolly mammoth identified two episodes of severe demographic collapse in Early-Middle Pleistocene and at Pleistocene-Holocene transition.
“Analysis of the complete genome from a late-surviving woolly mammoth has identified two episodes of severe demographic collapse in the Early-Middle Pleistocene and at the Pleistocene-Holocene transition 3 .”
From Ancient DNA analysis (2021) · cites this paper as [3]
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The complete genome sequence of a Neanderthal from the Altai Mountains
Prüfer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, A., Renaud, G., Sudmant, P. H., de Filippo, C., et al. (2014) · Nature · doi:10.1038/nature12886 · Cited by 2,254
Self-citationDouble indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
Kircher, M., Sawyer, S., & Meyer, M. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr771 · Cited by 1,106 · cited 1×
“We generated double-stranded DNA libraries from extracts of both specimens using uracil-DNA glycosylase treatment to excise uracils, following established protocols [9, 10].”
MethodGenome sequence of a 45,000-year-old modern human from western Siberia
Fu, Q., Li, H., Moorjani, P., Jay, F., Slepchenko, S. M., Bondarev, A. A., Johnson, P. L. F., Aximu-Petri, A., Prüfer, K., de Filippo, C., et al. (2014) · Nature · doi:10.1038/nature13810 · Cited by 1,023
Self-citationThe tiger genome and comparative analysis with lion and snow leopard genomes
Cho, Y. S., Hu, L., Hou, H., Lee, H., Xu, J., Kwon, S., Oh, S., Kim, H.-M., Jho, S., Kim, S., et al. (2013) · Nature Communications · doi:10.1038/ncomms3433 · Cited by 312
Cahill, J. A., Green, R. E., Fulton, T. L., Stiller, M., Jay, F., Ovsyanikov, N., Salamzade, R., St. John, J., Stirling, I., Slatkin, M., et al. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003345 · Cited by 221
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Research works printed but not linked: 28
- Caughley, 1994, Directions in conservation biology, J. Anim. Ecol., 63, 215, 10.2307/5542 · DOI · Paper page
- Spielman, 2004, Most species are not driven to extinction before genetic factors impact them, Proc. Natl. Acad. Sci. USA, 101, 15261, 10.1073/pnas.0403809101 · DOI
- Jamieson, 2012, How does the 50/500 rule apply to MVPs?, Trends Ecol. Evol., 27, 578, 10.1016/j.tree.2012.07.001 · DOI
- Stuart, 2004, Pleistocene to Holocene extinction dynamics in giant deer and woolly mammoth, Nature, 431, 684, 10.1038/nature02890 · DOI
- Vartanyan, 1993, Holocene dwarf mammoths from Wrangel Island in the Siberian Arctic, Nature, 362, 337, 10.1038/362337a0 · DOI
- Veltre, 2008, Patterns of faunal extinction and paleoclimatic change from mid-Holocene mammoth and polar bear remains, Pribilof Islands, Alaska, Quat. Res., 70, 40, 10.1016/j.yqres.2008.03.006 · DOI
- Vartanyan, 2008, Collection of radiocarbon dates on the mammoths (Mammuthus primigenius) and other genera of Wrangel Island, northeast Siberia, Russia, Quat. Res., 70, 51, 10.1016/j.yqres.2008.03.005 · DOI
- Maschenko, 2013, Morphology of a mammoth calf (Mammuthus primigenius) from Ol’chan (Oimiakon, Yakutia), Paleontol. J., 47, 425, 10.1134/S0031030113040096 · DOI
- Meyer, 2010, Illumina sequencing library preparation for highly multiplexed target capture and sequencing, Cold Spring Harb Protoc, 2010, t5448, 10.1101/pdb.prot5448 · DOI
- Gilbert, 2008, Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes, Proc. Natl. Acad. Sci. USA, 105, 8327, 10.1073/pnas.0802315105 · DOI
- Barnes, 2007, Genetic structure and extinction of the woolly mammoth, Mammuthus primigenius, Curr. Biol., 17, 1072, 10.1016/j.cub.2007.05.035 · DOI
- Miller, 2008, Sequencing the nuclear genome of the extinct woolly mammoth, Nature, 456, 387, 10.1038/nature07446 · DOI
- Li, 2011, Inference of human population history from individual whole-genome sequences, Nature, 475, 493, 10.1038/nature10231 · DOI · Paper page
- Rohland, 2010, Genomic DNA sequences from mastodon and woolly mammoth reveal deep speciation of forest and savanna elephants, PLoS Biol., 8, e1000564, 10.1371/journal.pbio.1000564 · DOI
- Rohland, 2007, Proboscidean mitogenomics: chronology and mode of elephant evolution using mastodon as outgroup, PLoS Biol., 5, e207, 10.1371/journal.pbio.0050207 · DOI
- Scally, 2012, Insights into hominid evolution from the gorilla genome sequence, Nature, 483, 169, 10.1038/nature10842 · DOI
- Palkopoulou, 2013, Holarctic genetic structure and range dynamics in the woolly mammoth, Proc. Biol. Sci., 280, 20131910, 10.1098/rspb.2013.1910 · DOI
- Kukla, 2002, Last interglacial climates, Quat. Res., 58, 2, 10.1006/qres.2001.2316 · DOI
- Schubert, 2014, Prehistoric genomes reveal the genetic foundation and cost of horse domestication, Proc. Natl. Acad. Sci. USA, 111, E5661, 10.1073/pnas.1416991111 · DOI · Paper page
- Green, 2010, A draft sequence of the Neandertal genome, Science, 328, 710, 10.1126/science.1188021 · DOI · Paper page
- Roca, 2015, Elephant natural history: a genomic perspective, Annu. Rev. Anim. Biosci., 3, 139, 10.1146/annurev-animal-022114-110838 · DOI
- Ishida, 2011, Reconciling apparent conflicts between mitochondrial and nuclear phylogenies in African elephants, PLoS ONE, 6, e20642, 10.1371/journal.pone.0020642 · DOI
- Brandt, 2012, Forest elephant mitochondrial genomes reveal that elephantid diversification in Africa tracked climate transitions, Mol. Ecol., 21, 1175, 10.1111/j.1365-294X.2012.05461.x · DOI
- Nyström, 2010, Temporal genetic change in the last remaining population of woolly mammoth, Proc. Biol. Sci., 277, 2331, 10.1098/rspb.2010.0301 · DOI
- Nyström, 2012, Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation, Mol. Ecol., 21, 3391, 10.1111/j.1365-294X.2012.05525.x · DOI
- Prado-Martinez, 2013, Great ape genetic diversity and population history, Nature, 499, 471, 10.1038/nature12228 · DOI
- Pemberton, 2012, Genomic patterns of homozygosity in worldwide human populations, Am. J. Hum. Genet., 91, 275, 10.1016/j.ajhg.2012.06.014 · DOI
- Keller, 2002, Inbreeding effects in wild populations, Trends Ecol. Evol., 17, 230, 10.1016/S0169-5347(02)02489-8 · DOI
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Orlando, L., Allaby, R., Skoglund, P., Der Sarkissian, C., Stockhammer, P. W., Ávila-Arcos, M. C., Fu, Q., Krause, J., Willerslev, E., Stone, A. C., et al. (2021) · Nature Reviews Methods Primers · doi:10.1038/s43586-020-00011-0 · Cited by 411
Self-citationMillion-year-old DNA sheds light on the genomic history of mammoths
van der Valk, T., Pečnerová, P., Díez-del-Molino, D., Bergström, A., Oppenheimer, J., Hartmann, S., Xenikoudakis, G., Thomas, J. A., Dehasque, M., Sağlıcan, E., et al. (2021) · Nature · doi:10.1038/s41586-021-03224-9 · Cited by 345
Self-citationHuman evolution: a tale from ancient genomes
Llamas, B., Willerslev, E., & Orlando, L. (2017) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2015.0484 · Cited by 100
Population genomics of the muskox' resilience in the near absence of genetic variation
Pečnerová, P., Lord, E., Garcia‐Erill, G., Hanghøj, K., Rasmussen, M. S., Meisner, J., Liu, X., van der Valk, T., Santander, C. G., Quinn, L., et al. (2024) · Molecular Ecology · doi:10.1111/mec.17205 · Cited by 19
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Metadata
- Authors
- Palkopoulou, E., Mallick, S., Skoglund, P., Enk, J., Rohland, N., Li, H., Omrak, A., Vartanyan, S., Poinar, H., Götherström, A., Reich, D., & Dalén, L.
- Venue
- Current Biology
- Publisher
- Elsevier BV
- Published
- 2015-05
- Volume
- 25
- Issue
- 10
- Pages
- 1395-1400
- ISSN
- 0960-9822
- PMC
- PMC4439331
- Cited by
- 302
- References
- 5
- Language
- en
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