Different requirements for the association of ATR–ATRIP and 9-1-1 to the stalled replication forks
Abstract
DNA replication checkpoint, a surveillance mechanism for S-phase progression, plays a crucial role for the maintenance of genome integrity. A variety of factors have been characterized to be involved in the checkpoint signal transduction. Rpa, a single strand DNA binding protein, was found to be responsible for forming a structure that is recognized by checkpoint sensors and then emits the initial signal for the activation of DNA damage checkpoint. Here we use a mutant of rpa1 gene, rfa1-t11, that has defects in recruiting checkpoint sensor proteins to the site of double strand break, to examine the mutant's effects on the activation of DNA replication checkpoint. We found that the mutant cells activated DNA replication checkpoint normally and showed no defects in recruiting ATR-ATRIP, a major sensor complex that is essential for DNA replication/damage checkpoint, to the site of stalled forks. In contrast, the mutant was defective in recruiting 9-1-1 complex, another sensor complex that functions in DNA damage checkpoint signal transduction, to the stalled forks. Moreover we found that sensitivity for HU obviously appeared in rfa1-t11 mutant when Mrc1 was deleted, while deletion of Rad9, an adaptor specific for damage checkpoint, had subtle effect. These data strongly suggest that rfa1-t11 mutant was mainly defective for activating DNA damage checkpoint and molecular requirement for the recruitment of ATR-ATRIP and 9-1-1 to the stressed forks may be different.
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The ATR-ATRIP complex and the 9-1-1 complex are recruited to RPA-coated single-stranded DNA independently and are bridged by TopBP1.
“The ATR-ATRIP complex and 9-1-1 complexes are recruited to RPA-ssDNA independently and are bridged by the multiple-function protein TopBP1 (Topoisomerase IIβ binding protein 1) [106–110].”
From Functional interplay between ATM/ATR-mediated DNA damage response and DNA repair pathways in oxidative stress (2014) · cites this paper as [108]
Cites
Sensing DNA Damage Through ATRIP Recognition of RPA-ssDNA Complexes
Zou, L., & Elledge, S. J. (2003) · Science · doi:10.1126/science.1083430 · Cited by 2,693 · see citing works
ATR and ATRIP: Partners in Checkpoint Signaling
Cortez, D., Guntuku, S., Qin, J., & Elledge, S. J. (2001) · Science · doi:10.1126/science.1065521 · Cited by 985 · see citing works
Lee, S. E., Moore, J. K., Holmes, A. M., Umezu, K., Kolodner, R. D., & Haber, J. E. (1998) · Cell · doi:10.1016/s0092-8674(00)81482-8 · Cited by 775 · see citing works
S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex
Katou, Y., Kanoh, Y., Bando, M., Noguchi, H., Tanaka, H., Ashikari, T., Sugimoto, K., & Shirahige, K. (2003) · Nature · doi:10.1038/nature01900 · Cited by 649 · see citing works
Self-citationMrc1 transduces signals of DNA replication stress to activate Rad53
Alcasabas, A. A., Osborn, A. J., Bachant, J., Hu, F., Werler, P., Bousset, K., Furuya, K., Diffley, J. F. X., Carr, A. M., & Elledge, S. J. (2001) · Nature Cell Biology · doi:10.1038/ncb1101-958 · Cited by 516 · see citing works
A unified view of the DNA-damage checkpoint
Melo, J. A., & Toczyski, D. P. (2002) · Current Opinion in Cell Biology · doi:10.1016/s0955-0674(02)00312-5 · Cited by 457 · see citing works
Replication protein A-mediated recruitment and activation of Rad17 complexes
Zou, L., Liu, D., & Elledge, S. J. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2336100100 · Cited by 431 · see citing works
Pellicioli, A., Lucca, C., Liberi, G., Marini, F., Lopes, M., Plevani, P., Romano, A., Fiore, P. P. D., & Foiani, M. (1999) · The EMBO Journal · doi:10.1093/emboj/18.22.6561 · Cited by 369 · see citing works
Pellicioli, A., Lee, S. E., Lucca, C., Foiani, M., & Haber, J. E. (2001) · Molecular Cell · doi:10.1016/s1097-2765(01)00177-0 · Cited by 290 · see citing works
Recruitment of Mec1 and Ddc1 Checkpoint Proteins to Double-Strand Breaks Through Distinct Mechanisms
Kondo, T., Wakayama, T., Naiki, T., Matsumoto, K., & Sugimoto, K. (2001) · Science · doi:10.1126/science.1063827 · Cited by 258 · see citing works
Paciotti, V., Clerici, M., Lucchini, G., & Longhese, M. P. (2000) · Genes & Development · doi:10.1101/gad.14.16.2046 · Cited by 246 · see citing works
The DNA damage response during DNA replication
Branzei, D., & Foiani, M. (2005) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2005.09.003 · Cited by 240 · see citing works
Genetic Analysis of Yeast RPA1 Reveals Its Multiple Functions in DNA Metabolism
Umezu, K., Sugawara, N., Chen, C., Haber, J. E., & Kolodner, R. D. (1998) · Genetics · doi:10.1093/genetics/148.3.989 · Cited by 206 · see citing works
Monitoring S phase progression globally and locally using BrdU incorporation in TK+ yeast strains
Lengronne, A. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.7.1433 · Cited by 171 · see citing works
Lucca, C., Vanoli, F., Cotta‐Ramusino, C., Pellicioli, A., Liberi, G., Haber, J. E., & Foiani, M. (2003) · Oncogene · doi:10.1038/sj.onc.1207199 · Cited by 169 · see citing works
Antoni, A. D., & Gallwitz, D. (2000) · Gene · doi:10.1016/s0378-1119(00)00083-4 · Cited by 98 · see citing works
MEC1-dependent phosphorylation of yeast RPA1 in vitro
Kim, H., & Brill, S. J. (2003) · DNA repair · doi:10.1016/j.dnarep.2003.07.004 · Cited by 42 · see citing works
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Sorted by citations
ATR: an essential regulator of genome integrity
Cimprich, K. A., & Cortez, D. (2008) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2450 · Cited by 1,798 · see citing works
Yan, S., Sorrell, M., & Berman, Z. (2014) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-014-1666-4 · Cited by 247 · see citing works
Replication protein A: directing traffic at the intersection of replication and repair
Oakley, G. G. (2010) · Frontiers in bioscience · doi:10.2741/3652 · Cited by 180 · see citing works
Xu, X., Vaithiyalingam, S., Glick, G. G., Mordes, D. A., Chazin, W., & Cortez, D. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.01079-08 · Cited by 166 · see citing works
Maintenance of fork integrity at damaged DNA and natural pause sites
Tourrière, H., & Pasero, P. (2007) · DNA repair · doi:10.1016/j.dnarep.2007.02.004 · Cited by 140 · see citing works
Function of a Conserved Checkpoint Recruitment Domain in ATRIP Proteins
Ball, H. L., Ehrhardt, M. R., Mordes, D. A., Glick, G. G., Chazin, W., & Cortez, D. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.02238-06 · Cited by 135 · see citing works
Analysis of replication profiles reveals key role of RFC-Ctf18 in yeast replication stress response
Crabbé, L., Thomas, A., Pantesco, V., Vos, J. D., Pasero, P., & Lengronne, A. (2010) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1932 · Cited by 136 · see citing works
Vanoli, F., Fumasoni, M., Szakál, B., Maloisel, L., & Branzei, D. (2010) · PLoS Genetics · doi:10.1371/journal.pgen.1001205 · Cited by 127 · see citing works
TopBP1 and DNA polymerase-α directly recruit the 9-1-1 complex to stalled DNA replication forks
Yan, S., & Michael, W. M. (2009) · Journal of Cell Biology · doi:10.1083/jcb.200810185 · Cited by 107 · see citing works
Cellular Functions of Human RPA1
Haring, S. J., Mason, A. C., Binz, S. K., & Wold, M. S. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m800881200 · Cited by 112 · see citing works
Herzberg, K., Bashkirov, V. I., Rolfsmeier, M., Haghnazari, E., McDonald, W. H., Anderson, S., Bashkirova, E. V., Yates, J. R., & Heyer, W.-D. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.01317-06 · Cited by 95 · see citing works
Role of Lamin B1 in Chromatin Instability
Butin‐Israeli, V., Adam, S. A., Jain, N., Otte, G. L., Neems, D. S., Wiesmüller, L., Berger, S. L., & Goldman, R. D. (2014) · Molecular and Cellular Biology · doi:10.1128/mcb.01145-14 · Cited by 84 · see citing works
Structural Basis of Mec1-Ddc2-RPA Assembly and Activation on Single-Stranded DNA at Sites of Damage
Deshpande, I., Seeber, A., Shimada, K., Keusch, J. J., Gut, H., & Gasser, S. M. (2017) · Molecular Cell · doi:10.1016/j.molcel.2017.09.019 · Cited by 63 · see citing works
RPA Mediates Recruitment of MRX to Forks and Double-Strand Breaks to Hold Sister Chromatids Together
Seeber, A., Hegnauer, A. M., Hustedt, N., Deshpande, I., Poli, J., Eglinger, J., Pasero, P., Gut, H., Shinohara, M., Hopfner, K., et al. (2016) · Molecular Cell · doi:10.1016/j.molcel.2016.10.032 · Cited by 66 · see citing works
Komata, M., Bando, M., Araki, H., & Shirahige, K. (2009) · Molecular and Cellular Biology · doi:10.1128/mcb.01934-08 · Cited by 66 · see citing works
Self-citationDubrana, K., van Attikum, H., Hediger, F., & Gasser, S. M. (2007) · Journal of Cell Science · doi:10.1242/jcs.018366 · Cited by 64 · see citing works
Glanzer, J. G., Liu, S., & Oakley, G. G. (2011) · Bioorganic & Medicinal Chemistry · doi:10.1016/j.bmc.2011.03.012 · Cited by 44 · see citing works
Efficient Herpes Simplex Virus 1 Replication Requires Cellular ATR Pathway Proteins
Mohni, K. N., Dee, A. R., Smith, S., Schumacher, A. J., & Weller, S. K. (2012) · Journal of Virology · doi:10.1128/jvi.02504-12 · Cited by 43 · see citing works
Hoitsma, N. M., Norris, J., Khoang, T. H., Kaushik, V., Chadda, R., Antony, E., Hedglin, M., & Freudenthal, B. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad481 · Cited by 29 · see citing works
Pathways and signatures of mutagenesis at targeted DNA nicks
Zhang, Y., Davis, L. J., & Maizels, N. (2021) · bioRxiv · doi:10.1371/journal.pgen.1009329 · Cited by 11 · see citing works
Ghaddar, N., Corda, Y., Luciano, P., Galli, M. G., Doksani, Y., & Géli, V. (2023) · Nature Communications · doi:10.1038/s41467-023-41100-4 · Cited by 7 · see citing works
Sarah, A. T., & Susan, L. (2013) · InTech eBooks · doi:10.5772/51393 · Cited by 7 · see citing works
Exploring SPK98 for the Selective Sensitization of ATM- or P53-Deficient Cancer Cells
Priya, B., Dubey, G., & Kirubakaran, S. (2023) · ACS Omega · doi:10.1021/acsomega.2c07356 · Cited by 5 · see citing works
The Inability to Disassemble Rad51 Nucleoprotein Filaments Leads to Aberrant Mitosis and Cell Death
Andriuskevicius, T., Dubenko, A., & Makovets, S. (2023) · Biomedicines · doi:10.3390/biomedicines11051450 · Cited by 3 · see citing works
Comprehensive mutational analysis of the checkpoint signaling function of Rpa1/Ssb1 in fission yeast
Xu, Y.-J., Bhadra, S., Mahdi, A. T. A., Dev, K., Yurtsever, İ., & Nakamura, T. (2023) · PLoS Genetics · doi:10.1371/journal.pgen.1010691 · Cited by 3 · see citing works
Mechanistic Insight into AP-Endonuclease 1 Cleavage of Abasic Sites at Stalled Replication ForksPreprint
Hoitsma, N. M., Norris, J., Khoang, T. H., Kaushik, V., Antony, E., Hedglin, M., & Freudenthal, B. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.08.22.504733 · Cited by 1 · see citing works
Role of the RPA-Sgs1 interaction in stabilizing stalled replication forks
Hegnauer, A. M. (2011) · edoc (University of Basel) · doi:10.5451/unibas-005705705
Xu, Y.-J., Gao, A., Dev, K., Zheng, Y., Alyahya, M. Y., Pasam, S., Kaur, G., & Zhou, C. (2026) · PLoS Genetics · doi:10.1371/journal.pgen.1012052
- Authors
- Kanoh, Y., Tamai, K., & Shirahige, K.
- Affiliations
- Tokyo Institute of Technology (JP)
- Medical & Biological Laboratories (Japan) (JP)
- Corresponding author
- Shirahige, Katsuhiko
- Venue
- Gene
- Publisher
- Elsevier BV
- Published
- 2006-08
- Volume
- 377
- Pages
- 88-95
- ISSN
- 0378-1119 (ISSN-L)
- OpenAlex
- W1970772221
- Cited by
- 29
- References
- 17
- Citations by year
- 2026: 1 · 2023: 5 · 2022: 1 · 2021: 1 · 2017: 1 · 2016: 1 · 2014: 2 · 2013: 1 · 2012: 1
- FWCI
- 1.22
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- Locations
- Gene (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Keywords
- DNA replication checkpoint, 9-1-1 complex, RPA1, stalled replication forks, DNA damage checkpoint, CD206, Rad9, genome stability, S phase progression
- MeSH terms
- Base Sequence, Binding Sites, DNA Damage, DNA Replication, DNA-Binding Proteins, DNA, Fungal, Genes, Fungal, Mutation, Saccharomyces cerevisiae, Transcription Factors, Signal Transduction, Polymerase Chain Reaction, Saccharomyces cerevisiae Proteins, Macromolecular Substances, Replication Protein A
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