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A modular framework for the development of targeted Covid-19 blood transcript profiling panels

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Identification and Validation of a Blood-Based 18-Gene Expression Signature in Colorectal Cancer

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Validation of Immune Cell Modules in Multicellular Transcriptomic Data

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Pre-Treatment Whole Blood Gene Expression Is Associated with 14-Week Response Assessed by Dynamic Contrast Enhanced Magnetic Resonance Imaging in Infliximab-Treated Rheumatoid Arthritis Patients

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The Relationship of Immune Cell Signatures to Patient Survival Varies within and between Tumor Types

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Toward the development of criteria for global flares in juvenile systemic lupus erythematosus

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Genetic and Nongenetic Variation Revealed for the Principal Components of Human Gene Expression

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Blood-based transcriptomics: leukemias and beyond

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Lessons learned in the analysis of high-dimensional data in vaccinomics

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FASN multi-omic characterization reveals metabolic heterogeneity in pancreatic and prostate adenocarcinoma

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The frontline of immune response in peripheral blood

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Decoding the complexities of human malaria through systems immunology

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The strength and form of natural selection on transcript abundance in the wild

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Scientific investigations into febrile reactions observed in the paediatric population following vaccination with a 2010 Southern Hemisphere Trivalent Influenza Vaccine

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The Ground State of Innate Immune Responsiveness Is Determined at the Interface of Genetic, Epigenetic, and Environmental Influences

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A review of clinical models for the evaluation of human TB vaccines

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New Attempts to Define and Clarify Lupus

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Multinomial modelling of TB/HIV co-infection yields a robust predictive signature and generates hypotheses about the HIV+TB+ disease state

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Disease Mechanisms in Rheumatology—Tools and Pathways: Current Perspectives on Systems Immunology Approaches to Rheumatic Diseases

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Bottom Up: A Modular View of Immunology

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Profiling networks of distinct immune-cells in tumors

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Transcriptome-Guided Drug Repositioning

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Host Transcriptomic Signature as Alternative Test-of-Cure in Visceral Leishmaniasis Patients Coinfected with HIV

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Time to infer miRNA sponge modules

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Model-based computational precision medicine to develop combination therapies for autoimmune diseases

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Projecting genetic associations through gene expression patterns highlights disease etiology and drug mechanisms

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New treatment options for lupus – a focus on belimumab

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Integration of transcriptional and mutational data simplifies the stratification of peripheral T‐cell lymphoma

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SITC 2018 workshop report: Immuno-Oncology Biomarkers: State of the Art

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Natural killer cells and type II interferon in Ro/SSA and La/SSB autoantibody-exposed newborns at risk of congenital heart block

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Transcriptomic studies of systemic lupus erythematosus

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Precision medicine in autoimmune diseases: fact or fiction

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Dysregulated long non-coding RNA in Sjögren’s disease impacts both interferon and adaptive immune responses

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Transcriptomic analyses of patient peripheral blood with hemoglobin depletion reveal glioblastoma biomarkers

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Clinical Pharmacokinetics, Pharmacodynamics, and Immunogenicity of Anifrolumab

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The Blood Transcriptome of Experimental Melioidosis Reflects Disease Severity and Shows Considerable Similarity with the Human Disease

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Third-Kind Encounters in Biomedicine: Immunology Meets Mathematics and Informatics to Become Quantitative and Predictive

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A Systems Biology-Based Investigation into the Pharmacological Mechanisms of Sheng-ma-bie-jia-tang Acting on Systemic Lupus Erythematosus by Multi-Level Data Integration

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Blood-Borne RNA Correlates with Disease Activity and IFN-Stimulated Gene Expression in Systemic Lupus Erythematosus

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Systemic Signature of the Lung Response to Respiratory Syncytial Virus Infection

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SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations

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Comprehensive Data Integration Approach to Assess Immune Responses and Correlates of RTS,S/AS01-Mediated Protection From Malaria Infection in Controlled Human Malaria Infection Trials

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Applications of systems biology in cancer immunotherapy: from target discovery to biomarkers of clinical outcome

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The Combination of IFN β and TNF Induces an Antiviral and Immunoregulatory Program via Non-Canonical Pathways Involving STAT2 and IRF9

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Distinct Gene Expression Signatures Characterize Strong Clinical Responders Versus Nonresponders to Canakinumab in Children With Systemic Juvenile Idiopathic Arthritis

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Gene Expression Analysis of Children with Acute Hematogenous Osteomyelitis Caused by Methicillin-Resistant Staphylococcus aureus: Correlation with Clinical Severity of Illness

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Blood Interferon Signatures Putatively Link Lack of Protection Conferred by the RTS,S Recombinant Malaria Vaccine to an Antigen-specific IgE Response

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Whole blood transcriptional variations between responders and non‐responders in asthma patients receiving omalizumab

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Transcriptomics

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Pivotal Functions of Plasmacytoid Dendritic Cells in Systemic Autoimmune Pathogenesis

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Hypomethylation of long interspersed nucleotide element‐1 in peripheral mononuclear cells of juvenile systemic lupus erythematosus patients in C hina

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Transcriptional profiling in infectious diseases: Ready for prime time?

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Gene Expression Profiling in a Mouse Model Identifies Fetal Liver- and Placenta-Derived Potential Biomarkers for Down Syndrome Screening

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Regulatory T Cells Orchestrate Similar Immune Evasion of Fetuses and Tumors in Mice

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Systems Biology Approach for New Target and Biomarker Identification

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Maternal Immunity Influences Vertical Transmission of Hepatitis B to Newborns

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Transcriptomics: The Key to Biomarker Discovery During Tuberculosis?

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Biomarkers for renal disease in childhood

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Innate immunity and hepatitis C virus infection: a microarray's view

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Single-cell resolution of longitudinal blood transcriptome profiles in rheumatoid arthritis, systemic lupus erythematosus and healthy control pregnancies

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Longitudinal evaluation of leukocyte transcripts in killer whales (Orcinus Orca)

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Dampened Inflammation and Improved Survival After CXCL5 Administration in Murine Lupus via Myeloid and Neutrophil Pathways

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Pathogenic Mechanisms of Allergic Inflammation : Atopic Asthma as a Paradigm

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Identifying gnostic predictors of the vaccine response

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Prospective validation of the provisional criteria for the evaluation of response to therapy in childhood‐onset systemic lupus erythematosus

Brunner, H. I., Higgins, G. C., Wiers, K. M., Lapidus, S., Olson, J. C., Onel, K. B., Punaro, M., Ying, J., Klein‐Gitelman, M. S., & Giannini, E. H. (2010) · Arthritis Care & Research · doi:10.1002/acr.20103 · Cited by 18

Transcriptomic analysis of a transgenic zebrafish hepatocellular carcinoma model reveals a prominent role of immune responses in tumour progression and regression

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Sparse partial least squares with group and subgroup structure

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Blood Interferon Signatures Putatively Link Lack of Protection Conferred by the RTS,S Recombinant Malaria Vaccine to an Antigen-specific IgE Response

Rinchai, D., Presnell, S., & Chaussabel, D. (2015) · F1000Research · doi:10.12688/f1000research.7093.1 · Cited by 17

Lessons From Transcriptome Analysis of Autoimmune Diseases

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Interferon and interferon-induced cytokines as markers of impending clinical progression in ANA+ individuals without a systemic autoimmune rheumatic disease diagnosis

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