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IFNβ and TNFα cooperate to induce a STAT1-independent antiviral and immunoregulatory program via non-canonical STAT2 and IRF9 pathwaysPreprint

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Identification of erythroid cell positive blood transcriptome phenotypes associated with severe respiratory syncytial virus infectionPreprint

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cinaR: A comprehensive R package for the differential analyses and functional interpretation of ATAC-seq dataPreprint

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An integrative network-based approach to identify driving gene communities in chronic obstructive pulmonary disease

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Gene expression profiling comes closer to the clinic

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Novel Approaches to Discovery of Biomarkers in Rheumatoid Arthritis: Comment on the Article by Oswald et al

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Profiling gene expression of the host response to a Plasmodium vivax irradiated sporozoite immunization and infectious challengePreprint

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The strength and form of natural selection on transcript abundance in the wildPreprint

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Immune and molecular landscape behind non-response to Mycophenolate Mofetil and Azathioprine in lupus nephritis therapyPreprint

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Neutralizing anti-DNase1L3 antibodies derive from autoreactive VH4-34 + -B cells and associate with the interferon signature in SLEPreprint

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Liquid-biopsy transcriptomic profiling uncovers molecular mediators of resistance to androgen receptor signaling inhibition in lethal prostate cancerPreprint

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Comparing the immunogenicity of intradermal and intramuscular vaccination of elderly with BNT162b2 XBB.1.5: An equivalent dose study

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XIST expression and hypermethylation of the X chromosome in males with systemic lupus erythematosus

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Comparison of BAFF and type I IFN activity in blood and placenta in SLE and healthy pregnancies

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Reproducible Molecular Subtypes in Systemic Lupus Erythematosus Are Associated With Disease Activity, Serology, and Distinct Trajectories Over Time

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Inferring Independent Sets of Gaussian Variables after Thresholding Correlations

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Blood Transcriptional Fingerprints to Assess the Immune Status of Human Subjects

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Finding Significantly Enriched Cells in Single-Cell RNA Sequencing by Single-Sample Approaches

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Farewell to innocence: Untangling septic shock in the postgenomic era*

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Labels of aberrant Clusters of Differentiation gene expression in a compendium of systemic lupus erythematosus patientsPreprint

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Methodical Considerations

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Pazopanib induces dramatic but transient contraction of myeloid suppression compartment in favor of adaptive immunityPreprint

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Stratification of Systemic Lupus Erythematosus Patients with Gene Expression Data Reveals Expression of Distinct Immune PathwaysPreprint

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Human Bone Marrow Plasma Cell Atlas: Maturation and Survival Pathways Unraveled by Single Cell AnalysesPreprint

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Comparative Analysis of Association Networks Using Single-Cell RNA Sequencing Data Reveals Perturbation-Relevant Gene SignaturesPreprint

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Molecular and Cellular Mechanisms of Systemic Autoimmune Diseases: Lessons Learned from Human Genetic Studies and Therapies in Systemic Lupus Erythematosus (SLE)Preprint

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Type I interferon induced differences in exercise adaptations of aerobic capacity and fatigue in systemic lupus erythematosus – A randomised controlled single-centre trial v1.0Preprint

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Deep functional profiling of gene sets using Large Language Models: A blueprint for tailored, context-aware functional annotationPreprint

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Chronic Graft Versus Host Disease: Inflammation at the Crossroads of Allo and Auto Immunity

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Biomarkers and Molecular Diagnostics

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Data Integration: Towards Understanding Biological Complexity

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