Cited by 52

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

The effects of demineralisation and sampling point variability on the measurement of glutamine deamidation in type I collagen extracted from bone

Simpson, J.P., Penkman, K.E.H., Demarchi, B., Koon, H., Collins, M.J., Thomas-Oates, J., Shapiro, B., Stark, M., Wilson, J.·2016·Journal of Archaeological Science

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.jas.2016.02.002

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • While rates of deamidation vary with temperature, pH, secondary and tertiary structures, and laboratory procedures, deamidation can be a useful indicator of protein degradation, although more work is needed to untangle contributing factors to these rates.

    “While rates of deamidation vary with temperature, pH, secondary and tertiary structures, and laboratory procedures (78, 79), deamidation can be a useful indicator of protein degradation, although still more work is needed to untangle contributing factors to these rates.”

    From Ancient protein analysis in archaeology (2021) · cites this paper as [78]

    Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 51

  1. Ambrose, 1993, Experimental evidence for the relationship of the carbon isotope ratios of whole diet and dietary protein to those of bone collagen and carbonate, Prehist. Hum. Bone, 1
  2. Ambrose, 1990, Preparation and characterization of bone and tooth collagen for isotopic analysis, J. Archaeol. Sci, 17, 431, 10.1016/0305-4403(90)90007-R · DOI
  3. Araki, 2011, Age estimation of museum wool textiles from Ovis aries using deamidation rates utilizing matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, Rapid Commun. Mass Spectrom., 25, 3396, 10.1002/rcm.5237 · DOI
  4. Bada, 1975, Amino acid racemization dating of fossil bones, World Archaeol., 7, 160, 10.1080/00438243.1975.9979630 · DOI
  5. Brock, 2007, Quality assurance of ultrafiltered bone dating, Radiocarbon, 49, 187, 10.1017/S0033822200042107 · DOI
  6. Brock, 2010, Pre-screening techniques for identification of samples suitable for radiocarbon dating of poorly preserved bones, J. Archaeol. Sci., 37, 855, 10.1016/j.jas.2009.11.015 · DOI
  7. Buckley, 2011, Collagen survival and its use for species identification in Holocene-lower Pleistocene bone fragments from British archaeological and paleontological sites, Antiqua, 1, 1, 10.4081/antiqua.2011.e1 · DOI
  8. Buckley, 2009, Species identification by analysis of bone collagen using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry, Rapid Commun. Mass Spectrom., 23, 3843, 10.1002/rcm.4316 · DOI · Paper page
  9. Capasso, 1991, First evidence of spontaneous deamidation of glutamine residue via cyclic imide to α- and γ-glutamic residue under physiological conditions, J. Chem. Soc. Chem. Commun., 23, 1667, 10.1039/C39910001667 · DOI
  10. Collins, 1995, A basic mathematical simulation of the chemical degradation of ancient collagen, J. Archaeol. Sci., 22, 175, 10.1006/jasc.1995.0019 · DOI · Paper page
  11. Covington, 2010, Link-lock: the mechanism of stabilising collagen by chemical reactions, World Leather, 25, 35
  12. Dobberstein, 2009, Archaeological collagen: why worry about collagen diagenesis?, Archaeol. Anthropol. Sci., 1, 31, 10.1007/s12520-009-0002-7 · DOI · Paper page
  13. Dobberstein, 2008, Degradation of biomolecules in artificially and naturally aged teeth: implications for age estimation based on aspartic acid racemization and DNA analysis, Forensic Sci. Int, 179, 181, 10.1016/j.forsciint.2008.05.017 · DOI
  14. Van Doorn, 2011, A novel and non-destructive approach for ZooMS analysis: ammonium bicarbonate buffer extraction, Archaeol. Anthropol. Sci., 3, 281, 10.1007/s12520-011-0067-y · DOI · Paper page
  15. Van Doorn, 2012, Site-specific deamidation of glutamine: a new marker of bone collagen deterioration, Rapid Commun. Mass Spectrom., 26, 2319, 10.1002/rcm.6351 · DOI · Paper page
  16. Van Duin, 1998, The effects of conformational constraints on aspartic acid racemization, Org. Geochem., 29, 1227, 10.1016/S0146-6380(98)00098-9 · DOI
  17. Li, 2010, Glutamine deamidation: differentiation of glutamic acid and γ-glutamic acid in peptides by electron capture dissociation, Anal. Chem., 82, 3606, 10.1021/ac9028467 · DOI
  18. Geiger, 1987, Deamidation, isomerization, and racemization at asparaginyl and aspartyl residues in peptides. Succinimide-linked reactions that contribute to protein degradation, J. Biol. Chem., 262, 785, 10.1016/S0021-9258(19)75855-4 · DOI
  19. Grun, 2006, Direct dating of human fossils, Yearb. Phys. Anthropol, 49, 2, 10.1002/ajpa.20516 · DOI
  20. Hawkey, 1995, Activity-induced Muscu los keletal stress markers ( MSM ) and subsistence strategy changes among ancient Hudson Bay Eskimos, Int. J. Osteoarchaeol., 324, 10.1002/oa.1390050403 · DOI
  21. High, 2015, Appetite for destruction: investigating bone degradation due to high acidity at Star Carr, J. Archaeol. Sci., 59, 159, 10.1016/j.jas.2015.04.001 · DOI · Paper page
  22. Hill, 1965, Hydrolysis of proteins, Adv. Protein Chem, 20, 37, 10.1016/S0065-3233(08)60388-5 · DOI
  23. Hurtado, 2012, Deamidation of collagen, Anal. Chem., 84, 3017, 10.1021/ac202980z · DOI
  24. Jonsson, 1986, A demineralization procedure for immunohistopathological use EDTA treatment preserves lymphoid cell surface antigens, J. Immunol. Methods, 88, 109, 10.1016/0022-1759(86)90058-X · DOI
  25. Koon, 2010, Sorting the butchered from the boiled, J. Archaeol. Sci., 37, 62, 10.1016/j.jas.2009.08.015 · DOI
  26. Koon, 2012, Identification of cooked bone using TEM imaging of bone collagen, Forensic Microsc. Skeletal Tissues, 915, 249, 10.1007/978-1-61779-977-8_15 · DOI
  27. Leo, 2011, Deamidation at asparagine and glutamine as a major modification upon deterioration/aging of proteinaceous binders in mural paintings, Anal. Chem., 2056, 10.1021/ac1027275 · DOI
  28. Marom, 2012, Single amino acid radiocarbon dating of Upper Paleolithic modern humans, Pnas, 109, 1, 10.1073/pnas.1116328109 · DOI
  29. McCullagh, 2010, Radiocarbon dating of individual amino acids from archaeological bone collagen, Radiocarbon, 52, 620, 10.1017/S0033822200045653 · DOI
  30. Orgel, 2001, The in situ supermolecular structure of type I collagen, Structure, 9, 1061, 10.1016/S0969-2126(01)00669-4 · DOI
  31. Pike, 2002, U-series dating of bone using the diffusion-adsorption model, Geochim. Cosmochim. Acta, 66, 4273, 10.1016/S0016-7037(02)00997-3 · DOI
  32. Pisskiewicz, 1970, Anomalous cleavage of asparttl-proline peptide bonds during amino acid sequence deigrminations, Biochem. Biophys. Res. Commun., 40, 1173, 10.1016/0006-291X(70)90918-6 · DOI
  33. Van der Plicht, 2014, Radiocarbon and mammoth bones: what's in a date, Quat. Int., 1
  34. Radkiewicz, 1996, Accelerated racemization of aspartic acid and asparagine residues via succinimide intermediates: an ab Initio theoretical exploration of mechanism, J. Am. Chem. Soc., 118, 9148, 10.1021/ja953505b · DOI
  35. Radkiewicz, 2001, Neighboring side chain effects on asparaginyl and aspartyl degradation: an ab Initio study of the relationship between peptide conformation and backbone NH acidity, J. Am. Chem. Soc., 124, 3499, 10.1021/ja0026814 · DOI
  36. Ramsey, 2007, Improvements to the pretreatment of bone at Oxford, Radiocarbon, 46, 155, 10.1017/S0033822200039473 · DOI
  37. Reimer, 2013, IntCal13 and Marine13 radiocarbon age calibration curves 0–50,000 years cal BP, Radiocarbon, 55, 1869, 10.2458/azu_js_rc.55.16947 · DOI · Paper page
  38. Rich, 1961, The molecular structure of collagen, J. Mol. Biol., 3, 483, 10.1016/S0022-2836(61)80016-8 · DOI
  39. Robinson, 1970, Controlled deamidation of peptides and proteins: an experimental hazard and a possible biological timer, Proc. Natl. Acad. Sci. U. S. A., 66, 753, 10.1073/pnas.66.3.753 · DOI
  40. Sealy, 2014, Comparison of two methods of extracting bone collagen for stable carbon and nitrogen isotope analysis: comparing whole bone demineralization with gelatinization and ultrafiltration, J. Archaeol. Sci, 47, 64, 10.1016/j.jas.2014.04.011 · DOI
  41. Shoulders, 2009, Collagen structure and stability, Annu. Rev. Biochem., 78, 929, 10.1146/annurev.biochem.77.032207.120833 · DOI · Paper page
  42. Smith, 2003, The thermal history of human fossils and the likelihood of successful DNA amplification, J. Hum. Evol., 45, 203, 10.1016/S0047-2484(03)00106-4 · DOI
  43. Smith, 2005, Diagenesis and survival of osteocalcin in archaeological bone, J. Archaeol. Sci., 32, 105, 10.1016/j.jas.2004.07.003 · DOI
  44. Stratton, 2001, Controlling deamidation rates in a model peptide: effects of temperature, peptide concentration, and additives, J. Pharm. Sci., 90, 2141, 10.1002/jps.1165 · DOI
  45. Takemoto, 1998, Deamidation of specific glutamine residues from alpha-A crystallin during aging of the human lens, Biochemistry, 37, 13681, 10.1021/bi981542k · DOI
  46. Turner-Walker, 2008, The chemical and microbial degradation of bones and teeth, Adv. Hum. Palaeopathol., 4, 3
  47. Tuross, 2012, Comparative decalcification methods, radiocarbon dates, and stable isotopes of the VIRI bones, Radiocarbon, 54, 837, 10.1017/S0033822200047482 · DOI
  48. Welker, 2015, Ancient proteins resolve the evolutionary history of Darwin ’ s South American ungulates, Nature, 522, 81, 10.1038/nature14249 · DOI · Paper page
  49. Westgate, 2008, Changing ideas on the identity and stratigraphic significance of the Sheep Creek tephra beds in Alaska and the Yukon Territory, north-western North America, Quat. Int., 178, 183, 10.1016/j.quaint.2007.03.009 · DOI
  50. Wilson, 2012, Assessing the extent of bone degradation using glutamine deamidation in collagen, Anal. Chem., 84, 9041, 10.1021/ac301333t · DOI · Paper page
  51. Xie, 1999, Secondary structure and protein deamidation, J. Pharm. Sci., 88, 8, 10.1021/js9802493 · DOI

Cited by

Sorted by citations

Metadata

Authors
Simpson, J. P., Penkman, K. E. H., Demarchi, B., Koon, H., Collins, M. J., Thomas-Oates, J., Shapiro, B., Stark, M., & Wilson, J.
Venue
Journal of Archaeological Science
Publisher
Elsevier BV
Published
2016-05
Volume
69
Pages
29-38
ISSN
0305-4403
Cited by
52
References
1
Language
en
Funders
  • NERC (NE/J500197/1)
  • Gordon and Betty Moore Foundation
  • Leverhulme Trust

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review