The DOI matches its Crossref record; 173 of the 174 references it cites were found in a registry or an index.
Interactions between gut bacteria and bile in health and disease
Abstract
Bile acids are synthesized from cholesterol in the liver and released into the intestine to aid the digestion of dietary lipids. The host enzymes that contribute to bile acid synthesis in the liver and the regulatory pathways that influence the composition of the total bile acid pool in the host have been well established. In addition, the gut microbiota provides unique contributions to the diversity of bile acids in the bile acid pool. Gut microbial enzymes contribute significantly to bile acid metabolism through deconjugation and dehydroxylation reactions to generate unconjugated bile acids and secondary bile acids. These microbial enzymes (which include bile salt hydrolase (BSH) and bile acid-inducible (BAI) enzymes) are essential for bile acid homeostasis in the host and represent a vital contribution of the gut microbiome to host health. Perturbation of the gut microbiota in disease states may therefore significantly influence bile acid signatures in the host, especially in the context of gastrointestinal or systemic disease. Given that bile acids are ligands for host cell receptors (including the FXR, TGR5 and Vitamin D Receptor) alterations to microbial enzymes and associated changes to bile acid signatures have significant consequences for the host. In this review we examine the contribution of microbial enzymes to the process of bile acid metabolism in the host and discuss the implications for microbe-host signalling in the context of C. difficile infection, inflammatory bowel disease and other disease states.
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“BA transformation by BSH-competent bacteria determines the magnitude of BA-induced nuclear FXR activation in the gut (Long et al., 2017; Sun et al., 2018).”
From Bacteroides dorei BDX-01 alleviates DSS-induced experimental colitis in mice by regulating intestinal bile salt hydrolase activity and the FXR-NLRP3 signaling pathway (2023) · cites this paper as Long et al., 2017
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“these enzymes have an important role in the enterohepatic cycling of endogenous substances such as bile acids (Long et al., 2017).”
From Gut reactions: Breaking down xenobiotic–microbiome interactions (2019) · cites this paper as Long et al., 2017
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Cites
Inference of Macromolecular Assemblies from Crystalline State
Krissinel, E., & Henrick, K. (2007) · Journal of Molecular Biology · doi:10.1016/j.jmb.2007.05.022 · Cited by 10,007
Richness of human gut microbiome correlates with metabolic markers
Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J.-M., Kennedy, S., et al. (2013) · Nature · doi:10.1038/nature12506 · Cited by 4,662
Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis
Koeth, R. A., Wang, Z., Levison, B. S., Buffa, J. A., Org, E., Sheehy, B. T., Britt, E. B., Fu, X., Wu, Y., Li, L., et al. (2013) · Nature Medicine · doi:10.1038/nm.3145 · Cited by 4,386
Gut microbiota composition correlates with diet and health in the elderly
Claesson, M. J., Jeffery, I. B., Conde, S., Power, S. E., O’Connor, E. M., Cusack, S., Harris, H. M. B., Coakley, M., Lakshminarayanan, B., O’Sullivan, O., et al. (2012) · Nature · doi:10.1038/nature11319 · Cited by 3,314
Gut metagenome in European women with normal, impaired and diabetic glucose control
Karlsson, F. H., Tremaroli, V., Nookaew, I., Bergström, G., Behre, C. J., Fagerberg, B., Nielsen, J., & Bäckhed, F. (2013) · Nature · doi:10.1038/nature12198 · Cited by 3,115
Bile salt biotransformations by human intestinal bacteria
Ridlon, J. M., Kang, D.-J., & Hylemon, P. B. (2006) · Journal of Lipid Research · doi:10.1194/jlr.r500013-jlr200 · Cited by 2,829
Sayin, S. I., Wahlström, A., Felin, J., Jäntti, S., Marschall, H.-U., Bamberg, K., Angelin, B., Hyötyläinen, T., Orešič, M., & Bäckhed, F. (2013) · Cell Metabolism · doi:10.1016/j.cmet.2013.01.003 · Cited by 2,331
Bile Acids: Natural Ligands for an Orphan Nuclear Receptor
Parks, D. J., Blanchard, S. G., Bledsoe, R. K., Chandra, G., Consler, T. G., Kliewer, S. A., Stimmel, J. B., Willson, T. M., Zavacki, A. M., Moore, D. D., et al. (1999) · Science · doi:10.1126/science.284.5418.1365 · Cited by 2,274
Bile acids induce energy expenditure by promoting intracellular thyroid hormone activation
Watanabe, M., Houten, S. M., Mataki, C., Christoffolete, M. A., Kim, B. W., Sato, H., Messaddeq, N., Harney, J. W., Ezaki, O., Kodama, T., et al. (2006) · Nature · doi:10.1038/nature04330 · Cited by 2,220
Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome
Yoshimoto, S., Loo, T. M., Atarashi, K., Kanda, H., Sato, S., Oyadomari, S., Iwakura, Y., Oshima, K., Morita, H., Hattori, M., et al. (2013) · Nature · doi:10.1038/nature12347 · Cited by 2,219
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Research works printed but not linked: 2
- Branton, 2011, In vitro characterization and safety of the probiotic strain Lactobacillus reuteri cardioviva NCIMB 30242, Int. J. Probiotics Prebiotics, 6, 1
- Gu, 2014, Cloning and analysis of bile salt hydrolase genes from Lactobacillus plantarum CGMCC No. 8198, Biotechnol. Lett., 36, 975, 10.1007/s10529-013-1434-9 · DOI
Cited by
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Items 301–400 of 496
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Shao, S., Cheng, X., Zheng, R., Zhang, S., Yu, Z., Wang, H., Wang, W., & Ye, Q. (2021) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2021.152545 · Cited by 12
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Capparelli, R., Cuomo, P., Gentile, A., & Iannelli, D. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24043883 · Cited by 12
İlhan, N. (2018) · International journal of medical biochemistry/International journal of medical biochemistry : · doi:10.14744/ijmb.2018.92400 · Cited by 13
Wang, W., Liu, Z., Yue, W., Zhu, L., Zhong, H., Yang, C., He, T., Wan, P., & Geng, J. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.875238 · Cited by 12
Lai, Z., Zhan, X., Lin, L., Zhang, J., Qi, W., Huisheng, Y., Mao, S., & Jin, W. (2023) · Journal of Animal Science · doi:10.1093/jas/skad278 · Cited by 11
Yin, Y., Feng, W., Chen, X., Chen, J., Wang, G., Xia, L., & Wu, K. (2024) · The Innovation Medicine · doi:10.59717/j.xinn-med.2024.100092 · Cited by 11
Meacci, D., Bruni, A., Cocquio, A., Dell’Anna, G., Mandarino, F. V., Marasco, G., Cecinato, P., Barbara, G., & Zagari, R. M. (2025) · Microorganisms · doi:10.3390/microorganisms13091980 · Cited by 11
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Lukichev, B. G., Rumyantsev, A. S., & Акименко, В. Б. (2018) · Nephrology (Saint-Petersburg) · doi:10.24884/1561-6274-2018-22-4-57-73 · Cited by 11
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Li, C., Ji, Q., He, T., Liu, Y., & Ma, Y. (2020) · Biocatalysis and Biotransformation · doi:10.1080/10242422.2020.1804881 · Cited by 11
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Romano-Keeler, J., Zhang, J., & Sun, J. (2021) · Gastroenterology Clinics of North America · doi:10.1016/j.gtc.2020.10.008 · Cited by 10
Tao, H., Mao, K., Zhang, Z., Wei, W., Huang, X., Chen, Y., Mei, S., & Tian, X. (2025) · Pharmacological Research · doi:10.1016/j.phrs.2025.108020 · Cited by 12
Shen, B., Zhou, C., Gu, T., Shen, Z., Guo, Y., Dai, W., Liu, Y., Zhang, J., Lu, L., & Dong, H. (2022) · Frontiers in Pharmacology · doi:10.3389/fphar.2022.1080226 · Cited by 10
Chen, M., Wei, W., Li, Y., Ge, S., Shen, J., Guo, J., Zhang, Y., Huang, X., Sun, X., Cheng, D., et al. (2024) · Cell Proliferation · doi:10.1111/cpr.13638 · Cited by 10
Dong, M., Liang, X., Zhu, T., Xu, T., Xie, L., & Feng, Y. (2024) · Nature and Science of Sleep · doi:10.2147/nss.s454297 · Cited by 11
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Moon, S. J., Hwang, J., Kang, W. K., Ahn, J.-P., & Kim, H. J. (2022) · Life Sciences · doi:10.1016/j.lfs.2022.120856 · Cited by 10
Tang, M., Liao, N., Tian, P., Shen, K., Liu, C., Ruan, L., & Wu, G. (2022) · Food Microbiology · doi:10.1016/j.fm.2022.104165 · Cited by 10
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Peiffer, A. L., Dugan, A. E., & Kiessling, L. L. (2024) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-062917-012322 · Cited by 10
Akter, S., Tasnim, S., Barua, R., Choubey, M., Arbee, S., Mohib, M. M., Minhaz, N., Choudhury, A., Sarker, P., & Mohiuddin, M. S. (2023) · Gastrointestinal Disorders · doi:10.3390/gidisord5030028 · Cited by 10
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Savvidis, C., Maggio, V., Rizzo, M., Zabulienė, L., & Ilias, Ι. (2025) · Medicina · doi:10.3390/medicina61091630 · Cited by 12
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Li, Z., Zhang, T., Liu, Y., Huang, Y., Liu, J., Wang, S., Sun, P., Nie, Y., Han, Y., Li, F., et al. (2024) · Food Bioscience · doi:10.1016/j.fbio.2024.105010 · Cited by 7
Li, Z., Liu, Y., Huang, Y., Liu, J., Tian, Y., Wang, S., Sun, P., Nie, Y., Gan, S., & Xu, H. (2023) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2023.123405 · Cited by 7
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Self-citationLi, Z., Xiao, W., Qin, W., Zeng, Y., Xia, Y., Wang, G., & Ai, L. (2025) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.5c03008 · Cited by 5
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Nguyen, H. V. M., Cabello, E. V., Dyer, D. W., Fender, C. L., García‐Jaramillo, M., Hord, N. G., Austad, S. N., Richardson, A. G., & Unnikrishnan, A. (2025) · Aging · doi:10.18632/aging.206211 · Cited by 4
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Gong, Q., Zhang, Y., Liu, J., Yuan, S., Hu, H., Cao, Y., Fu, S., & Guo, W. (2025) · iMetaOmics. · doi:10.1002/imo2.70026 · Cited by 3
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Yao, C., Li, X., Tang, M., Liu, L., Cai, X., Yuan, X., Hu, J., Zhao, J., Qiao, W., Zhang, Y., et al. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1599931 · Cited by 3
Liu, B. (2024) · Journal of Immunology · doi:10.52338/immunology.2024.3917 · Cited by 3
Luo, C., & Gao, H. (2025) · Infectious Microbes & Diseases · doi:10.1097/im9.0000000000000171 · Cited by 3
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Guo, Y., Huang, J.-B., Xue, J., Qin, S.-J., Cai, D., Wu, Q.-Z., Chu, C., Tang, C., Xie, Y., Lin, L., et al. (2024) · Environmental Pollution · doi:10.1016/j.envpol.2024.124583 · Cited by 3
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Metagenomic analysis of bile acid biotransformation by gut microbiota in wild birds
Yang, M., Xie, L.-H., Wang, X., Gao, Y., Liu, R., Ma, H., Lei, C.-C., Jiang, J., Su, J., Zhang, X., et al. (2025) · Poultry Science · doi:10.1016/j.psj.2025.105956 · Cited by 2
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Metadata
- Authors
- Long, S. L., Gahan, C. G. M., & Joyce, S. A.
- Affiliations
- University College Cork (IE)
- Corresponding author
- Gahan, Cormac G.M.
- Venue
- Molecular Aspects of Medicine
- Publisher
- Elsevier BV
- Published
- 2017-08
- Volume
- 56
- Pages
- 54-65
- ISSN
- 0098-2997 (ISSN-L)
- OpenAlex
- W2626300127
- Cited by
- 495
- References
- 174
- Citations by year
- 2026: 42 · 2025: 52 · 2024: 67 · 2023: 56 · 2022: 82 · 2021: 69 · 2020: 47 · 2019: 38 · 2018: 31 · 2017: 10
- FWCI
- 3.23
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Molecular Aspects of Medicine (publishedVersion)
- PubMed (publishedVersion)
- Funders
- APC Microbiome Institute (SFI/12/RC/2273)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Oncology › Drug Transport and Resistance Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Cholesterol and Lipid Metabolism
- Keywords
- gut microbiota, bile acids, bile acid metabolism, bile salt hydrolase, deconjugation, dehydroxylation, secondary bile acids, bile acid homeostasis, farnesoid X receptor, TGR5, vitamin D receptor, Clostridium difficile infection, inflammatory bowel disease, gut-liver axis
- MeSH terms
- Gastrointestinal Microbiome, Receptor, Farnesoid X-Activated, Amidohydrolases, Animals, Bacterial Proteins, Bile Acids and Salts, Biotransformation, Enterocolitis, Pseudomembranous, Gene Expression Regulation, Homeostasis, Humans, Intestinal Mucosa, Intestines, Liver, NADH, NADPH Oxidoreductases, Clostridioides difficile, Receptors, Cytoplasmic and Nuclear, Receptors, Calcitriol, Receptors, G-Protein-Coupled, Host-Pathogen Interactions
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