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Horizontal transfer of antibiotic resistance genes in the human gut microbiome
Open accessAbstract
Infections caused by antibiotic-resistant bacteria are a major threat to public health. The pathogens causing these infections can acquire antibiotic resistance genes in a process termed horizontal gene transfer (HGT). HGT is a common event in the human gut microbiome, that is, the microbial ecosystem of the human intestinal tract. HGT in the gut microbiome can occur via different mechanisms of which transduction and conjugation have been best characterised. Novel bioinformatic tools and experimental approaches have been developed to determine the association of antibiotic resistance genes with their microbial hosts and to quantify the extent of HGT in the gut microbiome. Insights from studies into HGT in the gut microbiome may lead to the development of novel interventions to minimise the spread of antibiotic resistance genes among commensals and opportunistic pathogens.
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Metadata
- Authors
- McInnes, R. S., McCallum, G. E., Lamberte, L. E., & van Schaik, W.
- Affiliations
- University of Birmingham (GB)
- Corresponding author
- Lamberte, Lisa E
- Venue
- Current Opinion in Microbiology
- Publisher
- Elsevier BV
- Published
- 2020-02
- Volume
- 53
- Pages
- 35-43
- ISSN
- 1369-5274 (ISSN-L)
- OpenAlex
- W3009269518
- Cited by
- 401
- References
- 83
- Citations by year
- 2026: 49 · 2025: 90 · 2024: 79 · 2023: 69 · 2022: 59 · 2021: 41 · 2020: 14
- FWCI
- 3.37
- Type
- journal article
- Language
- en
- Open access
- Licence
- Locations
- Current Opinion in Microbiology (publishedVersion)
- PubMed (publishedVersion)
- University of Birmingham Research Portal (University of Birmingham) (submittedVersion, cc-by-nc-nd)
- Funders
- Biotechnology and Biological Sciences Research Council
- Wellcome Trust
- Royal Society
- Medical Research Council
- Topics
- Health Sciences › Medicine › Microbiology (medical) › Antibiotic Resistance in Bacteria
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Physical Sciences › Environmental Science › Pollution › Pharmaceutical and Antibiotic Environmental Impacts
- Keywords
- horizontal gene transfer, antibiotic resistance genes, human gut microbiome, transduction, conjugation, antibiotic resistance spread, commensal bacteria, opportunistic pathogens
- MeSH terms
- Gastrointestinal Microbiome, Animals, Anti-Bacterial Agents, Bacteria, Bacterial Proteins, Humans, Gene Transfer, Horizontal, Drug Resistance, Bacterial
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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