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The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

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Baltz, Alexander G., Munschauer, Mathias, Schwanhäusser, Björn, Vasile, Alexandra, Murakawa, Yasuhiro, Schueler, Markus, Youngs, Noah, Penfold-Brown, Duncan, Drew, Kevin, Milek, Miha, Wyler, Emanuel, Bonneau, Richard, Selbach, Matthias, Dieterich, Christoph, Landthaler, Markus·2012·Molecular Cell
DOI 10.1016/j.molcel.2012.05.021
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Research works printed but not linked: 51

  1. Adam, 1986, mRNA polyadenylate-binding protein: gene isolation and sequencing and identification of a ribonucleoprotein consensus sequence, Mol. Cell. Biol., 6, 2932, 10.1128/MCB.6.8.2932 · DOI · Paper page
  2. Anders, 2012, doRiNA: a database of RNA interactions in post-transcriptional regulation, Nucleic Acids Res., 40, D180, 10.1093/nar/gkr1007 · DOI · Paper page
  3. Andersen, 2005, Nucleolar proteome dynamics, Nature, 433, 77, 10.1038/nature03207 · DOI · Paper page
  4. Aravind, 2003, The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism, Genome Biol., 4, R64, 10.1186/gb-2003-4-10-r64 · DOI · Paper page
  5. Bessonov, 2008, Isolation of an active step I spliceosome and composition of its RNP core, Nature, 452, 846, 10.1038/nature06842 · DOI · Paper page
  6. Bono, 2006, The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA, Cell, 126, 713, 10.1016/j.cell.2006.08.006 · DOI · Paper page
  7. Bradfield, 2012, A genome-wide association meta-analysis identifies new childhood obesity loci, Nat Genet., 10.1038/ng.2247 · DOI · Paper page
  8. Choi, 1984, Isolation of the heterogeneous nuclear RNA-ribonucleoprotein complex (hnRNP): a unique supramolecular assembly, Proc. Natl. Acad. Sci. USA, 81, 7471, 10.1073/pnas.81.23.7471 · DOI · Paper page
  9. de Lima Morais, 2011, SUPERFAMILY 1.75 including a domain-centric gene ontology method, Nucleic Acids Res., 39, D427, 10.1093/nar/gkq1130 · DOI · Paper page
  10. Denhez, 1994, Conservation of regulated alternative splicing and identification of functional domains in vertebrate homologs to the Drosophila splicing regulator, suppressor-of-white-apricot, J. Biol. Chem., 269, 16170, 10.1016/S0021-9258(17)33989-3 · DOI
  11. Dölken, 2008, High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay, RNA, 14, 1959, 10.1261/rna.1136108 · DOI · Paper page
  12. Drew, 2011, The Proteome Folding Project: proteome-scale prediction of structure and function, Genome Res., 21, 1981, 10.1101/gr.121475.111 · DOI
  13. Favier, 1994, Detection of proteins that bind to the leucine zipper motif of c-Myb, Oncogene, 9, 305
  14. Favre, 1993, 4-Thiouridine incorporation into the RNA of monkey kidney cells (CV-1) triggers near-UV light long-term inhibition of DNA, RNA and protein synthesis, Photochem. Photobiol., 58, 689, 10.1111/j.1751-1097.1993.tb04953.x · doi:10.1111/j.1751-1097.1993.tb04953.x
  15. Greenberg, 1979, Ultraviolet light-induced crosslinking of mRNA to proteins, Nucleic Acids Res., 6, 715, 10.1093/nar/6.2.715 · DOI
  16. Haas, 1995, Identification of a sequence-specific single-stranded DNA binding protein that suppresses transcription of the mouse myelin basic protein gene, J. Biol. Chem., 270, 12503, 10.1074/jbc.270.21.12503 · DOI
  17. Hafner, 2010, Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP, Cell, 141, 129, 10.1016/j.cell.2010.03.009 · DOI · Paper page
  18. Hassfeld, 1998, Molecular definition of heterogeneous nuclear ribonucleoprotein R (hnRNP R) using autoimmune antibody: immunological relationship with hnRNP P, Nucleic Acids Res., 26, 439, 10.1093/nar/26.2.439 · DOI
  19. Jackson, 2010, The mechanism of eukaryotic translation initiation and principles of its regulation, Nat. Rev. Mol. Cell Biol., 11, 113, 10.1038/nrm2838 · DOI · Paper page
  20. Kabe, 1999, The role of human MBF1 as a transcriptional coactivator, J. Biol. Chem., 274, 34196, 10.1074/jbc.274.48.34196 · DOI
  21. Kennedy, 1992, Purification and characterization of cytosolic aconitase from beef liver and its relationship to the iron-responsive element binding protein, Proc. Natl. Acad. Sci. USA, 89, 11730, 10.1073/pnas.89.24.11730 · DOI · Paper page
  22. Kiledjian, 1992, Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box, EMBO J., 11, 2655, 10.1002/j.1460-2075.1992.tb05331.x · DOI · Paper page
  23. Kim, 2008, DBC1 is a negative regulator of SIRT1, Nature, 451, 583, 10.1038/nature06500 · DOI · Paper page
  24. Kishore, 2011, A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins, Nat. Methods, 8, 559, 10.1038/nmeth.1608 · DOI · Paper page
  25. Knapinska, 2011, Chaperone Hsp27 modulates AUF1 proteolysis and AU-rich element-mediated mRNA degradation, Mol. Cell. Biol., 31, 1419, 10.1128/MCB.00907-10 · DOI
  26. Kole, 2012, RNA therapeutics: beyond RNA interference and antisense oligonucleotides, Nat. Rev. Drug Discov., 11, 125, 10.1038/nrd3625 · DOI · Paper page
  27. Lee, 2004, RAP—a putative RNA-binding domain, Trends Biochem. Sci., 29, 567, 10.1016/j.tibs.2004.09.005 · DOI
  28. Limou, 2009, Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02), J. Infect. Dis., 199, 419, 10.1086/596067 · DOI · Paper page
  29. Lindberg, 1974, Isolation of messenger ribonucleoproteins from mammalian cells, J. Mol. Biol., 86, 451, 10.1016/0022-2836(74)90030-8 · DOI · Paper page
  30. Mazan-Mamczarz, 2003, RNA-binding protein HuR enhances p53 translation in response to ultraviolet light irradiation, Proc. Natl. Acad. Sci. USA, 100, 8354, 10.1073/pnas.1432104100 · DOI · Paper page
  31. Milek, 2012, Transcriptome-wide analysis of protein-RNA interactions using high-throughput sequencing, Semin. Cell Dev. Biol., 23, 206, 10.1016/j.semcdb.2011.12.001 · DOI
  32. Moore, 2009, Pre-mRNA processing reaches back to transcription and ahead to translation, Cell, 136, 688, 10.1016/j.cell.2009.02.001 · DOI · Paper page
  33. Mostafavi, 2008, GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function, Genome Biol., 9, S4, 10.1186/gb-2008-9-s1-s4 · DOI · Paper page
  34. Owen, 2007, MYBBP1a is a novel repressor of NF-kappaB, J. Mol. Biol., 366, 725, 10.1016/j.jmb.2006.11.099 · DOI
  35. Peña-Castillo, 2008, A critical assessment of Mus musculus gene function prediction using integrated genomic evidence, Genome Biol., 9, S2, 10.1186/gb-2008-9-s1-s2 · DOI · Paper page
  36. Pollard, 2010, Detection of nonneutral substitution rates on mammalian phylogenies, Genome Res., 20, 110, 10.1101/gr.097857.109 · DOI · Paper page
  37. Popow, 2011, HSPC117 is the essential subunit of a human tRNA splicing ligase complex, Science, 331, 760, 10.1126/science.1197847 · DOI
  38. Scherrer, 2010, A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes, PLoS ONE, 5, e15499, 10.1371/journal.pone.0015499 · DOI
  39. Setyono, 1981, Proteins associated with poly(A) and other regions of mRNA and hnRNA molecules as investigated by crosslinking, Cell, 24, 775, 10.1016/0092-8674(81)90103-3 · doi:10.1016/0092-8674(81)90103-3
  40. Shiina, 2005, A novel RNA-binding protein in neuronal RNA granules: regulatory machinery for local translation, J. Neurosci., 25, 4420, 10.1523/JNEUROSCI.0382-05.2005 · DOI
  41. Silvera, 2006, Effect of Ku proteins on IRES-mediated translation, Biol. Cell, 98, 353, 10.1042/BC20050060 · DOI
  42. Squires, 2012, Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA, Nucleic Acids Res., 10.1093/nar/gks144 · DOI · Paper page
  43. Thalhammer, 2011, Human AlkB homologue 5 is a nuclear 2-oxoglutarate dependent oxygenase and a direct target of hypoxia-inducible factor 1α (HIF-1α), PLoS ONE, 6, e16210, 10.1371/journal.pone.0016210 · DOI
  44. Ting, 2005, Human Ku70/80 interacts directly with hTR, the RNA component of human telomerase, Nucleic Acids Res., 33, 2090, 10.1093/nar/gki342 · DOI
  45. Tsvetanova, 2010, Proteome-wide search reveals unexpected RNA-binding proteins in Saccharomyces cerevisiae, PLoS ONE, 5, e12671, 10.1371/journal.pone.0012671 · DOI
  46. Uemura, 2009, Unconventional splicing of XBP1 mRNA occurs in the cytoplasm during the mammalian unfolded protein response, J. Cell Sci., 122, 2877, 10.1242/jcs.040584 · DOI
  47. Vitour, 2004, RoXaN, a novel cellular protein containing TPR, LD, and zinc finger motifs, forms a ternary complex with eukaryotic initiation factor 4G and rotavirus NSP3, J. Virol., 78, 3851, 10.1128/JVI.78.8.3851-3862.2004 · DOI
  48. Wagenmakers, 1980, Cross-linking of mRNA to proteins by irradiation of intact cells with ultraviolet light, Eur. J. Biochem., 112, 323, 10.1111/j.1432-1033.1980.tb07207.x · DOI
  49. Yoshida, 2001, XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ER stress to produce a highly active transcription factor, Cell, 107, 881, 10.1016/S0092-8674(01)00611-0 · DOI · Paper page
  50. Zhang, 2011, Translational repression of p53 by RNPC1, a p53 target overexpressed in lymphomas, Genes Dev., 25, 1528, 10.1101/gad.2069311 · DOI
  51. Zou, 2006, Polyamine depletion increases cytoplasmic levels of RNA-binding protein HuR leading to stabilization of nucleophosmin and p53 mRNAs, J. Biol. Chem., 281, 19387, 10.1074/jbc.M602344200 · DOI

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Metadata

Authors
Baltz, A. G., Munschauer, M., Schwanhäusser, B., Vasile, A., Murakawa, Y., Schueler, M., Youngs, N., Penfold-Brown, D., Drew, K., Milek, M., Wyler, E., Bonneau, R., Selbach, M., Dieterich, C., & Landthaler, M.
Venue
Molecular Cell
Publisher
Elsevier BV
Published
2012-06
Volume
46
Issue
5
Pages
674-690
ISSN
1097-2765 (ISSN-L)
DOI
10.1016/j.molcel.2012.05.021
OpenAlex
W1986911150
Cited by
1,198
References
14
FWCI
28.81
Type
journal article
Language
en
Open access
bronze
Licence

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CoChat. (2026). Citation check: The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts. https://app.cochat.ai/papers/10.1016/j.molcel.2012.05.021
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Baltz, A. G., Munschauer, M., Schwanhäusser, B., Vasile, A., Murakawa, Y., Schueler, M., Youngs, N., Penfold-Brown, D., Drew, K., Milek, M., Wyler, E., Bonneau, R., Selbach, M., Dieterich, C., & Landthaler, M. (2012). The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts. Molecular Cell. https://doi.org/10.1016/j.molcel.2012.05.021

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