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Network Organization of the Huntingtin Proteomic Interactome in Mammalian Brain
Open accessAbstract
We used affinity-purification mass spectrometry to identify 747 candidate proteins that are complexed with Huntingtin (Htt) in distinct brain regions and ages in Huntington's disease (HD) and wild-type mouse brains. To gain a systems-level view of the Htt interactome, we applied Weighted Correlation Network Analysis to the entire proteomic data set to unveil a verifiable rank of Htt-correlated proteins and a network of Htt-interacting protein modules, with each module highlighting distinct aspects of Htt biology. Importantly, the Htt-containing module is highly enriched with proteins involved in 14-3-3 signaling, microtubule-based transport, and proteostasis. Top-ranked proteins in this module were validated as Htt interactors and genetic modifiers in an HD Drosophila model. Our study provides a compendium of spatiotemporal Htt-interacting proteins in the mammalian brain and presents an approach for analyzing proteomic interactome data sets to build in vivo protein networks in complex tissues, such as the brain.
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“Interestingly, in vivo PPI screening by large-scale co-immunoprecipitation and mass spectrometry provided tissue- and time-specific information that was not found by Y2H studies167.”
From Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders (2015) · cites this paper as [167]
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“WGCNA identified spatially and temporally specific modules associated with mutant Htt (which encodes huntingtin); and proteins with high intra-modular connectivity (hub proteins) modulated neurodegeneration in flies.”
From Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders (2015) · cites this paper as [167]
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Greco, T. M., Secker, C., Ramos, E. S., Federspiel, J. D., Liu, J.-P., Perez, A. M., Al‐Ramahi, I., Cantle, J. P., Carroll, J. B., Botas, J., et al. (2022) · Cell Systems · doi:10.1016/j.cels.2022.01.005 · Cited by 42
Self-citationStudying polyglutamine diseases in Drosophila
Xu, Z., Tito, A. J., Rui, Y., & Zhang, S. (2015) · Experimental Neurology · doi:10.1016/j.expneurol.2015.08.002 · Cited by 41
Bidirectional Control of Postsynaptic Density-95 (PSD-95) Clustering by Huntingtin
Parsons, M. P., Kang, R., Buren, C., Dau, A., Southwell, A. L., Doty, C. N., Sanders, S. S., Hayden, M. R., & Raymond, L. A. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.513945 · Cited by 41
Dysregulation of 14‐3‐3 proteins in neurodegenerative diseases with Lewy body or Alzheimer pathology
McFerrin, M. B., Chi, X., Cutter, G., & Yacoubian, T. A. (2017) · Annals of Clinical and Translational Neurology · doi:10.1002/acn3.421 · Cited by 40
Cognitive dysfunction in H untington's disease: mechanisms and therapeutic strategies beyond BDNF
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Cause or compensation?—Altered neuronal Ca2+ handling in Huntington's disease
Mackay, J. P., Nassrallah, W. B., & Raymond, L. A. (2018) · CNS Neuroscience & Therapeutics · doi:10.1111/cns.12817 · Cited by 40
Harding, R., Loppnau, P., Ackloo, S. Z., Lemak, A. S., Hutchinson, A., Hunt, B., Holehouse, A. S., Ho, J. C., Fan, L., Toledo, L. M., et al. (2019) · Journal of Biological Chemistry · doi:10.1074/jbc.ra118.007204 · Cited by 38
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SorCS2-mediated NR2A trafficking regulates motor deficits in Huntington’s disease
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14-3-3 mitigates alpha-synuclein aggregation and toxicity in the in vivo preformed fibril model
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Mutations causing Lopes-Maciel-Rodan syndrome are huntingtin hypomorphs
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Metadata
- Authors
- Shirasaki, D. I., Greiner, E. R., Al-Ramahi, I., Gray, M., Boontheung, P., Geschwind, D. H., Botas, J., Coppola, G., Horvath, S., Loo, J. A., & Yang, X. W.
- Affiliations
- University of California, Los Angeles (US)
- Baylor College of Medicine (US)
- Corresponding author
- Loo, Joseph A.
- Yang, X. William
- Venue
- Neuron
- Publisher
- Elsevier BV
- Published
- 2012-07
- Volume
- 75
- Issue
- 1
- Pages
- 41-57
- ISSN
- 0896-6273 (ISSN-L)
- PMC
- PMC3432264
- OpenAlex
- W2028159081
- Cited by
- 297
- References
- 77
- Citations by year
- 2026: 12 · 2025: 14 · 2024: 17 · 2023: 13 · 2022: 28 · 2021: 31 · 2020: 26 · 2019: 18 · 2018: 27 · 2017: 28 · 2016: 22 · 2015: 19 · 2014: 22 · 2013: 19 · 2012: 1
- FWCI
- 8.04
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Neuron (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institute of Mental Health (R37MH060233)
- National Institute on Drug Abuse (R01DA030913)
- National Institute of General Medical Sciences (T32GM008496, R01GM103479)
- National Institute of Neurological Disorders and Stroke (T32NS043124, R01NS049501, R01NS074312, P30NS062691)
- National Center for Research Resources (R01RR020004, R01RR20004)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Genetic Neurodegenerative Diseases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bioinformatics and Genomic Networks
- Keywords
- huntingtin, protein-protein interaction network, Huntington's disease, brain regions, age-related changes, microtubule transport, proteostasis, genetic modifiers, Drosophila model, weighted gene co-expression network analysis
- MeSH terms
- Huntingtin Protein, Animals, Brain, Disease Models, Animal, Drosophila, Female, Humans, Mice, Transgenic, Nerve Tissue Proteins, Proteomics, Mice, Gene Regulatory Networks
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