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Idax and Rinf facilitate expression of Tet enzymes to promote neural and suppress trophectodermal programs during differentiation of embryonic stem cells

Abou-Jaoude, Antoine, Huang, Cheng-Yen, Flores, Julio C., Ravichandran, Mirunalini, Lei, Run, Chrysanthou, Stephanie, Dawlaty, Meelad M.·2022·Stem Cell Research

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Citations

Cites

Research works printed but not linked: 25

  1. Chrysanthou, 2018, A critical role of TET1/2 proteins in cell-cycle progression of trophoblast stem cells, Stem Cell Rep., 10, 1355, 10.1016/j.stemcr.2018.02.014 · DOI
  2. Chrysanthou, 2022, The DNA dioxygenase Tet1 regulates H3K27 modification and embryonic stem cell biology independent of its catalytic activity, Nucleic Acids Res., 10.1093/nar/gkac089 · DOI
  3. Dawlaty, 2011, Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development, Cell Stem Cell, 9, 166, 10.1016/j.stem.2011.07.010 · DOI · Paper page
  4. Dawlaty, 2013, Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development, Dev. Cell, 24, 310, 10.1016/j.devcel.2012.12.015 · DOI
  5. Dixon, 2021, QSER1 protects DNA methylation valleys from de novo methylation, Science, 372, 10.1126/science.abd0875 · DOI
  6. Dobin, 2013, STAR: ultrafast universal RNA-seq aligner, Bioinformatics, 29, 15, 10.1093/bioinformatics/bts635 · DOI · Paper page
  7. Jaenisch, 2008, Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming, Cell, 132, 567, 10.1016/j.cell.2008.01.015 · DOI
  8. Kim, 2016, CXXC5 plays a role as a transcription activator for myelin genes on oligodendrocyte differentiation, Glia, 64, 350, 10.1002/glia.22932 · DOI
  9. Kim, 2014, CXXC5 is a transcriptional activator of Flk-1 and mediates bone morphogenic protein-induced endothelial cell differentiation and vessel formation, FASEB J., 28, 615, 10.1096/fj.13-236216 · DOI
  10. Kim, 2010, A novel Wilms tumor 1 (WT1) target gene negatively regulates the WNT signaling pathway, J. Biol. Chem., 285, 14585, 10.1074/jbc.M109.094334 · DOI
  11. Knappskog, 2011, RINF (CXXC5) is overexpressed in solid tumors and is an unfavorable prognostic factor in breast cancer, Ann. Oncol., 22, 2208, 10.1093/annonc/mdq737 · DOI
  12. Ko, 2013, Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX, Nature, 497, 122, 10.1038/nature12052 · DOI · Paper page
  13. Koh, 2011, Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells, Cell Stem Cell, 8, 200, 10.1016/j.stem.2011.01.008 · DOI · Paper page
  14. Lee, 2015, The Dishevelled-binding protein CXXC5 negatively regulates cutaneous wound healing, J. Exp. Med., 212, 1061, 10.1084/jem.20141601 · DOI
  15. Li, 2014, CXXC5 regulates differentiation of C2C12 myoblasts into myocytes, J. Muscle Res. Cell Motil., 35, 259, 10.1007/s10974-014-9400-2 · DOI
  16. Liao, 2014, featureCounts: an efficient general purpose program for assigning sequence reads to genomic features, Bioinformatics, 30, 923, 10.1093/bioinformatics/btt656 · DOI · Paper page
  17. Liu, N., Wang, M., Deng, W., Schmidt, C.S., Qin, W., Leonhardt, H., and Spada, F. (2013). Intrinsic and extrinsic connections of Tet3 dioxygenase with CXXC zinc finger modules. PLoS One 8, e62755. · DOI
  18. Ma, 2017, Epigenetic regulator CXXC5 recruits DNA demethylase Tet2 to regulate TLR7/9-elicited IFN response in pDCs, J. Exp. Med., 214, 1471, 10.1084/jem.20161149 · DOI · Paper page
  19. Pendino, 2009, Functional involvement of RINF, retinoid-inducible nuclear factor (CXXC5), in normal and tumoral human myelopoiesis, Blood, 113, 3172, 10.1182/blood-2008-07-170035 · DOI
  20. Rasmussen, 2019, TET2 binding to enhancers facilitates transcription factor recruitment in hematopoietic cells, Genome Res., 29, 564, 10.1101/gr.239277.118 · DOI · Paper page
  21. Ravichandran, M., Lei, R., Tang, Q., Zhao, Y., Lee, J., Ma, L., Chrysanthou, S., Lorton, B.M., Cvekl, A., Shechter, D., et al. (2019). Rinf Regulates Pluripotency Network Genes and Tet Enzymes in Embryonic Stem Cells. Cell Rep 28, 1993-2003 e1995. · DOI · Paper page
  22. Robinson, 2010, edgeR: a Bioconductor package for differential expression analysis of digital gene expression data, Bioinformatics, 26, 139, 10.1093/bioinformatics/btp616 · DOI · Paper page
  23. Tahiliani, 2009, Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1, Science, 324, 930, 10.1126/science.1170116 · DOI · Paper page
  24. Wang, 2013, One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering, Cell, 153, 910, 10.1016/j.cell.2013.04.025 · DOI · Paper page
  25. Wu, 2011, Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells, Nature, 473, 389, 10.1038/nature09934 · DOI · Paper page

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Metadata

Authors
Abou-Jaoude, A., Huang, C.-Y., Flores, J. C., Ravichandran, M., Lei, R., Chrysanthou, S., & Dawlaty, M. M.
Venue
Stem Cell Research
Publisher
Elsevier BV
Published
2022-05
Volume
61
Pages
102770
ISSN
1873-5061
Cited by
4
References
3
Language
en
Funders
  • National Institutes of Health (R01GM122839, R01HL148852)
  • New York State Department of Health (C32589GG)
  • New York State Stem Cell Science

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