Allosteric Conformational Barcodes Direct Signaling in the Cell
Open accessAbstract
The cellular network is highly interconnected. Pathways merge and diverge. They proceed through shared proteins and may change directions. How are cellular pathways controlled and their directions decided, coded, and read? These questions become particularly acute when we consider that a small number of pathways, such as signaling pathways that regulate cell fates, cell proliferation, and cell death in development, are extensively exploited. This review focuses on these signaling questions from the structural standpoint and discusses the literature in this light. All co-occurring allosteric events (including posttranslational modifications, pathogen binding, and gain-of-function mutations) collectively tag the protein functional site with a unique barcode. The barcode shape is read by an interacting molecule, which transmits the signal. A conformational barcode provides an intracellular address label, which selectively favors binding to one partner and quenches binding to others, and, in this way, determines the pathway direction, and, eventually, the cell's response and fate.
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Allostery and signaling are properties of populations.
“Allostery and signaling are properties of populations.”
From AlphaFold, Artificial Intelligence (AI), and Allostery (2022) · cites this paper as [118]
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Nussinov, R., & Tsai, C.-J. (2014) · Trends in Pharmacological Sciences · doi:10.1016/j.tips.2014.03.006 · Cited by 119 · see citing works
Self-citationDynamic Protein Allosteric Regulation and Disease
Nussinov, R., Tsai, C.-J., & Jang, H. (2019) · Advances in Experimental Medicine and Biology · doi:10.1007/978-981-13-8719-7_2 · Cited by 18 · see citing works
Self-citation
- Authors
- Nussinov, R., Ma, B., Tsai, C.-J., & Csermely, P.
- Affiliations
- Tel Aviv University (IL)
- National Cancer Institute (US)
- Corresponding author
- Nussinov, Ruth
- Venue
- Structure
- Publisher
- Elsevier BV
- Published
- 2013-09
- Volume
- 21
- Issue
- 9
- Pages
- 1509-1521
- ISSN
- 0969-2126 (ISSN-L)
- PMC
- PMC6361540
- OpenAlex
- W1966693725
- Cited by
- 55
- References
- 99
- Citations by year
- 2026: 1 · 2025: 3 · 2024: 2 · 2022: 3 · 2021: 3 · 2019: 8 · 2018: 2 · 2017: 1 · 2016: 7 · 2015: 10 · 2014: 14 · 2013: 1
- FWCI
- 1.00
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Structure (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Semmelweis University Repository (Semmelweis University) (submittedVersion)
- Funders
- National Institutes of Health (HHSN261200800001C)
- National Cancer Institute (HHSN261200800001E))
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Receptor Mechanisms and Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Keywords
- allosteric communication, protein conformation, post-translational modification, pathogen binding, gain-of-function mutations, protein-protein interaction, cell fate determination, cell proliferation, cell death, protein functional sites
- MeSH terms
- Allosteric Regulation, Animals, Humans, Models, Molecular, Phosphorylation, Protein Processing, Post-Translational, Signal Transduction, Catalytic Domain, Intracellular Signaling Peptides and Proteins, Extracellular Signal-Regulated MAP Kinases, Protein Interaction Maps
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