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Anisotropy of Fluctuation Dynamics of Proteins with an Elastic Network Model
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Naylor, H. M., & Newcomer, M. E. (1999) · Biochemistry · doi:10.1021/bi982291i · Cited by 188
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Metadata
- Authors
- Atilgan, A. R., Durell, S. R., Jernigan, R. L., Demirel, M. C., Keskin, O., & Bahar, I.
- Venue
- Biophysical Journal
- Publisher
- Elsevier BV
- Published
- 2001-01
- Volume
- 80
- Issue
- 1
- Pages
- 505-515
- ISSN
- 0006-3495 (ISSN-L)
- OpenAlex
- W2113994268
- Cited by
- 1,637
- References
- 1
- FWCI
- 7.60
- Type
- journal article
- Language
- en
- Open access
- bronze
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Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
