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Chapter Twenty‐Eight Qualitative and Quantitative Characterization of Autophagy in Caenorhabditis elegans by Electron Microscopy
Abstract
Caenorhabditis elegans has been introduced relatively late into the field of autophagy with no previous results by classical methods. Therefore, it has to be studied in parallel with both traditional electron microscopy and modern molecular approaches. In general, correct identification of autophagic elements by electron microscopy is indispensable to establish a firm basis for our understanding of the process. The principles and the method for identification, applied also for C. elegans, are summarized first in this article, to facilitate their utilization both for further studies and the analysis of new cell types and to support researchers new to electron microscopy techniques. Studying autophagy in the worm by electron microscopy has required the development of special handling and sampling techniques in addition to overcoming the general technical difficulties due to the nature of C. elegans samples. These are described in detail, together with some initial qualitative and quantitative results obtained by them. The feasibility of the presented method is supported by data which show that in continuously fed worms the autophagic compartment is in the lower range of the 10(-2)% order of magnitude of the cytoplasmic volume, while immediately after molting or upon starvation in the second larval period, usually more than a 10-fold increase can be measured. In dauer larvae, individual variation of the autophagic compartment is very high. The predauer stage in daf-2 mutants doe…
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“the notoriously slow process of freeze substitution of frozen samples can be accelerated tremendously by sample agitation using either an experimental setup or agitation modules within automated freeze-substitution units [153,154].”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [154]
Citations
Cites
The structure of the nervous system of the nematode Caenorhabditis elegans
White, J. G., Southgate, E., Thomson, J. N., & Brenner, S. (1986) · Philosophical Transactions of the Royal Society of London. B, Biological Sciences · doi:10.1098/rstb.1986.0056 · Cited by 5,589
Dual roles of autophagy in the survival of Caenorhabditis elegans during starvation
Kang, C., You, Y.-J., & Avery, L. (2007) · Genes & Development · doi:10.1101/gad.1573107 · Cited by 294
Eskelinen, E.-L. (2008) · Autophagy · doi:10.4161/auto.5179 · Cited by 197
Research works printed but not linked: 26
- Arstila, 1972, Studies on cellular autophagocytosis. A histochemical study on sequential alterations of mitochondria in the glucagon‐induced autophagic vacuoles of rat liver, Lab. Invest., 27, 317
- Ashford, 1962, Cytoplasmic components in hepatic cell lysosomes, J. Cell Biol., 12, 198, 10.1083/jcb.12.1.198 · DOI
- Brenner, 1974, The genetics of Caenorhabditis elegans, Genetics, 77, 71, 10.1093/genetics/77.1.71 · DOI
- Cao, 2007, Physiological functions of Atg6/Beclin 1: A unique autophagy‐related protein, Cell Res., 17, 839, 10.1038/cr.2007.78 · DOI · Paper page
- Cheong, 2008, The Atg1 kinase complex is involved in the regulation of protein recruitment to initiate sequestering vesicle formation for nonspecific autophagy in Saccharomyces cerevisiae, Mol. Biol. Cell, 19, 668, 10.1091/mbc.E07-08-0826 · DOI · Paper page
- Clark, 1957, Cellular differentiation in the kidneys of newborn mice studied with the electron microscope, J. Biophys. Biochem. Cytol., 3, 349, 10.1083/jcb.3.3.349 · DOI
- de Duve, 1966, Functions of lysosomes, Annu. Rev. Physiol., 28, 435, 10.1146/annurev.ph.28.030166.002251 · DOI · Paper page
- Ericsson, 1969, Mechanism of cellular autophagy, Vol. 2, 345
- Ericsson, 1969, Studies on induced cellular autophagy. II. Characterization of the membranes bordering autophagosomes in parenchymal liver cells, Exp. Cell Res., 56, 393, 10.1016/0014-4827(69)90030-5 · DOI
- Glinsmann, 1966, Observations on the subcellular organization of hepatic parenchymal cells. II. Evolution of reversible alterations induced by hypoxia, Lab. Invest., 15, 762
- Hall, 1995, Electron microscopy and three‐dimensional image reconstruction, Methods Cell. Biol., 48, 395, 10.1016/S0091-679X(08)61397-7 · DOI
- Klionsky, 2008, Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes, Autophagy, 4, 1, 10.4161/auto.5338 · DOI · Paper page
- Kovács, 2007, Sequestration revisited: Integrating traditional electron microscopy, de novo assembly and new results, Autophagy, 3, 655, 10.4161/auto.4590 · DOI
- Liang, 1998, Protection against fatal Sindbis virus encephalitis by Beclin, a novel Bcl‐2‐interacting protein, J. Virology, 72, 8586, 10.1128/JVI.72.11.8586-8596.1998 · DOI
- Meléndez, 2003, Autophagy genes are essential for dauer development and life‐span extension in C. elegans, Science, 301, 1387, 10.1126/science.1087782 · DOI · Paper page
- Novikoff, 1959, The proximal tubule cell in experimental hydronephrosis, J. Biophys. Biochem. Cytol., 6, 136, 10.1083/jcb.6.1.136 · DOI
- Ogura, 2006, The autophagy‐related kinase UNC‐51 and its binding partner UNC‐14 regulate the subcellular localization of the Netrin receptor UNC‐5 in Caenorhabditis elegans, Development, 133, 3441, 10.1242/dev.02503 · DOI
- Ogura, 1994, Caenorhabditis elegans unc‐51 gene required for axonal elongation encodes a novel serine/threonine kinase, Genes Dev., 8, 2389, 10.1101/gad.8.20.2389 · DOI
- Papadopoulos, 1986, Regression of rat liver autophagic vacuoles by locally applied cycloheximide, Lab. Invest., 54, 100
- Pfeifer, 1976, Lysosomen und Autophagie, Verh. Dtsch. Ges. Pathol., 60, 28
- Reynolds, 1963, The use of lead citrate at high pH as an electron‐opaque stain in electron microscopy, J. Cell Biol., 17, 208, 10.1083/jcb.17.1.208 · DOI
- Rhodin, 1954, Correlation of ultrastructural organization and function in normal and experimentally changed proximal tubule cell of the mouse kidney, Aktiebolaget Godvil, Stockholm, 1
- Roggo, 2002, Membrane transport in Caenorhabditis elegans: An essential role for VPS34 at the nuclear membrane, Embo J., 21, 1673, 10.1093/emboj/21.7.1673 · DOI
- Stack, 1994, Vps34p required for yeast vacuolar protein sorting is a multiple specificity kinase that exhibits both protein kinase and phosphatidylinositol‐specific PI 3‐kinase activities, J. Biol. Chem., 269, 31552, 10.1016/S0021-9258(18)31729-0 · DOI
- Suzuki, 2007, Molecular machinery of autophagosome formation in yeast, Saccharomyces cerevisiae, FEBS Lett., 581, 2156, 10.1016/j.febslet.2007.01.096 · DOI
- Takács‐Vellai, 2005, Inactivation of the autophagy gene bec‐1 triggers apoptotic cell death in C. elegans, Curr. Biol., 15, 1513, 10.1016/j.cub.2005.07.035 · DOI
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Sorted by citations
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
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Self-citationGuidelines for the use and interpretation of assays for monitoring autophagy
Klionsky, D. J., Abdalla, F. C., Abeliovich, H., Abraham, R. T., Acevedo-Arozena, A., Adeli, K., Agholme, L., Agnello, M., Agostinis, P., Aguirre-Ghiso, J. A., et al. (2012) · Autophagy · doi:10.4161/auto.19496 · Cited by 3,996
Self-citationGuidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1
Klionsky, D. J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., Abeliovich, H., Abildgaard, M. H., Abudu, Y. P., Acevedo-Arozena, A., et al. (2021) · Autophagy · doi:10.1080/15548627.2020.1797280 · Cited by 2,897
Self-citationSeeing is believing: The impact of electron microscopy on autophagy research
Eskelinen, E.-L., Reggiori, F., Baba, M., Kovács, A. L., & Seglen, P. O. (2011) · Autophagy · doi:10.4161/auto.7.9.15760 · Cited by 281
Self-citationThe role of autophagy in axonal degeneration of the optic nerve
Koch, J. C., & Lingor, P. (2016) · Experimental Eye Research · doi:10.1016/j.exer.2015.08.016 · Cited by 46
Metadata
- Authors
- Sigmond, T., Fehér, J., Baksa, A., Pásti, G., Pálfia, Z., Takács‐Vellai, K., Kovács, J., Vellai, T., & Kovács, A. L.
- Venue
- Methods in Enzymology
- Publisher
- Elsevier
- Published
- 2008
- Pages
- 467-491
- ISSN
- 0076-6879
- Cited by
- 25
- References
- 3
- Language
- en
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