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How good are deep phylogenetic trees?
Abstract
Great interest is given to species emerging early in phylogenetic reconstruction because they are often assumed to represent an ancestor. Recent studies indicate, however, that species branching deep in molecular trees are often fast-evolving ones, misplaced because of the long-branch artefact. The detection of genuinely deep-branching organisms remains an elusive task.
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“the inclusion of outgroups very distant from the ingroup can cause reconstruction artifacts by attracting fast-evolving (long-branched) ingroup species toward the root (25, 27 -31)”
From Genomic data do not support comb jellies as the sister group to all other animals (2015) · cites this paper as [27]
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Metadata
- Authors
- Philippe, H., & Laurent, J.
- Affiliations
- Université Paris-Sud (FR)
- Corresponding author
- Philippe, Hervé
- ORCID
- Philippe, Hervé
- Venue
- Current Opinion in Genetics & Development
- Publisher
- Elsevier BV
- Published
- 1998-12
- Volume
- 8
- Issue
- 6
- Pages
- 616-623
- ISSN
- 0959-437X (ISSN-L)
- OpenAlex
- W2022561965
- Cited by
- 324
- References
- 71
- Citations by year
- 2026: 3 · 2025: 1 · 2024: 6 · 2023: 2 · 2022: 3 · 2021: 2 · 2020: 12 · 2019: 9 · 2018: 5 · 2017: 8 · 2015: 9 · 2014: 9 · 2013: 4 · 2012: 9
- FWCI
- 1.66
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Current Opinion in Genetics & Development (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Protist diversity and phylogeny
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
- Keywords
- molecular phylogeny, ancestral species, phylogenetic inference
- MeSH terms
- Animals, Humans, Phylogeny, Evolution, Molecular
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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