The new animal phylogeny: Reliability and implications
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DNA sequence analysis dictates new interpretation of phylogenic trees. Taxa that were once thought to represent successive grades of complexity at the base of the metazoan tree are being displaced to much higher positions inside the tree. This leaves no evolutionary "intermediates" and forces us to rethink the genesis of bilaterian complexity.
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The parental anemones have somewhat less allelic variation than sea squirts, sea urchins, or Populus, but comparable to pufferfish.
“Thus the parental anemones whose genomes we sampled have somewhat less allelic variation than broadcast spawning invertebrates such as sea squirts (~2%) (7) and sea urchins (5-10%) (8), or outbreeding plants like Populus (~2%) (34), but a comparable amount to the pufferfish (0.5%) (35).”
From Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization (2007) · cites this paper as [34]
Bilateria derive from a common ancestor.
“The Bilateria thus derive from a common ancestor, a point repeatedly substantiated in current molecular phylogenies (reviewed in Adoutte et al., 2000;Peterson and Eernisse, 2001).”
From Precambrian Animal Life: Probable Developmental and Adult Cnidarian Forms from Southwest China (2002) · cites this paper as Adoutte et al., 2000
The bilaterians are monophyletic.
“Cladistic analyses, both morphological and molecular, clearly indicate that the bilaterians are monophyletic, i.e., they derive from a latest common ancestor that gave rise only to bilaterians (see ref. 8).”
From Precambrian animal diversity: Putative phosphatized embryos from the Doushantuo Formation of China (2000) · cites this paper as [8]
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Cites
Jacob, F. (1977) · Science · doi:10.1126/science.860134 · Cited by 2,711 · see citing works
PHYLOGENIES FROM MOLECULAR SEQUENCES: INFERENCE AND RELIABILITY
Felsenstein, J. (1988) · Annual Review of Genetics · doi:10.1146/annurev.ge.22.120188.002513 · Cited by 2,159 · see citing works
Evidence for a clade of nematodes, arthropods and other moulting animals
Aguinaldo, A. M. A., Turbeville, J. M., Linford, L. S., Rivera, M. C., Garey, J. R., Raff, R. A., & Lake, J. A. (1997) · Nature · doi:10.1038/387489a0 · Cited by 1,609 · see citing works
Molecular Systematics: 1994–1995
Sytsma, K. J., & Hahn, W. J. (1997) · Springer eBooks · doi:10.1007/978-3-642-60458-4_21 · Cited by 1,173 · see citing works
Animal evolution: interrelationships of the living phyla
(2012) · Choice Reviews Online · doi:10.5860/choice.50-1469 · Cited by 1,041 · see citing works
Early animal evolution: emerging views from comparative biology and geology
Knoll, A. H., & Carroll, S. B. (1999) · Science · doi:10.1126/science.284.5423.2129 · Cited by 821 · see citing works
Homeotic genes and the evolution of arthropods and chordates
Carroll, S. B. (1995) · Nature · doi:10.1038/376479a0 · Cited by 758 · see citing works
Molecular Phylogeny of the Animal Kingdom
Field, K. G., Olsen, G. J., Lane, D. J., Giovannoni, S. J., Ghiselin, M. T., Raff, E. C., Pace, N. R., & Raff, R. A. (1988) · Science · doi:10.1126/science.3277277 · Cited by 744 · see citing works
Big trees from little genomes: mitochondrial gene order as a phylogenetic tool
Boore, J. L., & Brown, W. M. (1998) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(98)80035-x · Cited by 676 · see citing works
Monophyletic Origins of the Metazoa: an Evolutionary Link with Fungi
Wainright, P. O., Hinkle, G., Sogin, M. L., & Stickel, S. K. (1993) · Science · doi:10.1126/science.8469985 · Cited by 653 · see citing works
Evidence from 18 S Ribosomal DNA that the Lophophorates Are Protostome Animals
Halanych, K. M., Bacheller, J. D., Aguinaldo, A. M. A., Liva, S. M., Hillis, D. M., & Lake, J. A. (1995) · Science · doi:10.1126/science.7886451 · Cited by 582 · see citing works
Hox genes in brachiopods and priapulids and protostome evolution
de Rosa, R., Grenier, J. K., Andreeva, T., Cook, C. E., Adoutte, A., Akam, M., Carroll, S. B., & Balavoine, G. (1999) · Nature · doi:10.1038/21631 · Cited by 541 · see citing works
Self-citationAnimal evolution: interrelationships of the living phyla
(1996) · Choice Reviews Online · doi:10.5860/choice.33-4500 · Cited by 455 · see citing works
Phylogeny of the Metazoa Based on Morphological and 18S Ribosomal DNA Evidence
Zrzavý, J., Mihulka, S., Kepka, P., Bezděk, A., & Tietz, D. F. (1998) · Cladistics · doi:10.1111/j.1096-0031.1998.tb00338.x · Cited by 439 · see citing works
Acoel Flatworms: Earliest Extant Bilaterian Metazoans, Not Members of Platyhelminthes
Ruiz‐Trillo, I., Riutort, M., Littlewood, D. T. J., Herniou, E. A., & Baguñà, J. (1999) · Science · doi:10.1126/science.283.5409.1919 · Cited by 435 · see citing works
Wada, H., & Satoh, N. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.5.1801 · Cited by 429 · see citing works
Nikaido, M., Rooney, A. P., & Okada, N. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.18.10261 · Cited by 420 · see citing works
Evolutionary relationships among protozoa.
Coombs, G. H., Vickerman, K., Sleigh, M. A., & Warren, A. (1998) · Kluwer Academic Publishers eBooks · Cited by 383 · see citing works
How good are deep phylogenetic trees?
Philippe, H., & Laurent, J. (1998) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(98)80028-2 · Cited by 324 · see citing works
Eernisse, D. J., Albert, J. S., & Anderson, F. E. (1992) · Systematic Biology · doi:10.1093/sysbio/41.3.305 · Cited by 315 · see citing works
Collins, A. G. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.26.15458 · Cited by 252 · see citing works
Are the Platyhelminthes a monophyletic primitive group? An assessment using 18S rDNA sequences
Carranza, S., Baguñà, J., & Riutort, M. (1997) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025785 · Cited by 228 · see citing works
Can the Cambrian explosion be inferred through molecular phylogeny?
Philippe, H., Chenuil, A., & Adoutte, A. (1994) · Development · doi:10.1242/dev.1994.supplement.15 · Cited by 226 · see citing works
Self-citationCladistic analyses of the animal kingdom
Nielsen, C., Scharff, N., & Eibye-Jacobsen, D. (1996) · Biological Journal of the Linnean Society · doi:10.1111/j.1095-8312.1996.tb01857.x · Cited by 222 · see citing works
Animal evolution: the end of the intermediate taxa?
Adoutte, A., Balavoine, G., Lartillot, N., & de Rosa, R. (1999) · Trends in Genetics · doi:10.1016/s0168-9525(98)01671-0 · Cited by 192 · see citing works
Self-citationEvolution of homeobox genes: Q50 Paired-like genes founded the Paired class
Galliot, B., de Vargas, C., & Miller, D. J. (1999) · Development Genes and Evolution · doi:10.1007/s004270050243 · Cited by 188 · see citing works
Winnepenninckx, B., Backeljau, T., Mackey, L. Y., Brooks, J. M., Wächter, R. D., Kumar, S., & Garey, J. R. (1995) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040287 · Cited by 187 · see citing works
Sponge phylogeny, animal monophyly, and the origin of the nervous system: 18S rRNA evidence
Cavalier-Smith, T., Allsopp, M. T. E. P., Chao, E. E., Boury-Esnault, N., & Vacelet, J. (1996) · Canadian Journal of Zoology · doi:10.1139/z96-231 · Cited by 180 · see citing works
Abouheif, E., Zardoya, R., & Meyer, A. (1998) · Journal of Molecular Evolution · doi:10.1007/pl00006397 · Cited by 167 · see citing works
Set‐aside cells in maximal indirect development: Evolutionary and developmental significance
Peterson, K. J., Cameron, R. A., & Davidson, E. H. (1997) · BioEssays · doi:10.1002/bies.950190713 · Cited by 164 · see citing works
Ancient origins of axial patterning genes: Hox genes and ParaHox genes in the Cnidaria
Finnerty, J. R., & Martindale, M. Q. (1999) · Evolution & Development · doi:10.1046/j.1525-142x.1999.99010.x · Cited by 152 · see citing works
Martinez, D. E., Dirksen, M.-L., Bode, P. M., Jamrich, M., Steele, R. E., & Bode, H. R. (1997) · Developmental Biology · doi:10.1006/dbio.1997.8715 · Cited by 150 · see citing works
A new perspective on lower metazoan relationships from 18S rDNA sequences
Kim, J., Kim, W., & Cunningham, C. W. (1999) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a026124 · Cited by 143 · see citing works
Bilaterian Origins: Significance of New Experimental Observations
Peterson, K. J., Cameron, R. A., & Davidson, E. H. (2000) · Developmental Biology · doi:10.1006/dbio.1999.9475 · Cited by 133 · see citing works
Gnathostomulida—An Enigmatic Metazoan Phylum from both Morphological and Molecular Perspectives
Littlewood, D. T. J., Telford, M. J., Clough, K. A., & Rohde, K. (1998) · Molecular Phylogenetics and Evolution · doi:10.1006/mpev.1997.0448 · Cited by 130 · see citing works
18S rRNA suggests that Entoprocta are protostomes, unrelated to Ectoprocta
Mackey, L. Y., Winnepenninckx, B., Wächter, R. D., Backeljau, T., Emschermann, P., & Garey, J. R. (1996) · Journal of Molecular Evolution · doi:10.1007/bf02352285 · Cited by 129 · see citing works
Investigation of molluscan phylogeny on the basis of 18S rRNA sequences
Winnepenninckx, B., Backeljau, T., & Wächter, R. D. (1996) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025577 · Cited by 122 · see citing works
Borchiellini, C., Boury‐Esnault, N., Vacelet, J., & Parco, Y. L. (1998) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025968 · Cited by 113 · see citing works
A Cladistic Analysis of Pseudocoelomate (Aschelminth) Morphology
WALLACE, R. L., Ricci, C. N., & Melone, G. (1996) · Invertebrate Biology · doi:10.2307/3227041 · Cited by 109 · see citing works
Are Platyhelminthes Coelomates without a Coelom? An Argument Based on the Evolution ofHoxGenes
Balavoine, G. (1998) · American Zoologist · doi:10.1093/icb/38.6.843 · Cited by 83 · see citing works
Self-citationPhylogenetic Relationships of Platyhelminthes Based on 18S Ribosomal Gene Sequences
Campos, A., Cummings, M. P., Reyes, J. L., & Laclette, J. P. (1998) · Molecular Phylogenetics and Evolution · doi:10.1006/mpev.1997.0483 · Cited by 75 · see citing works
Elongation Factor 1-Alpha Sequences Do Not Support an Early Divergence of the Acoela
Berney, C., Pawlowski, J., & Zaninetti, L. (2000) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a026384 · Cited by 58 · see citing works
One or Three Cambrian Radiations?
Balavoine, G., & Adoutte, A. (1998) · Science · doi:10.1126/science.280.5362.397 · Cited by 55 · see citing works
Self-citationKobayashi, M., Wada, H., & Satoh, N. (1996) · Molecular Phylogenetics and Evolution · doi:10.1006/mpev.1996.0036 · Cited by 52 · see citing works
Why molecular biology needs palaeontology
Morris, S. C. (1994) · Development · doi:10.1242/dev.1994.supplement.1 · Cited by 42 · see citing works
Müller, W. E. G., Kruse, M., Blumbach, B., Skorokhod, A. A., & Müller, I. M. (1999) · Gene · doi:10.1016/s0378-1119(99)00226-7 · Cited by 30 · see citing works
Flagged first, then by citations
2 of the 48 references couldn’t be matched to a known paper.
Research works printed but not linked: 14
- [1]Swofford D L, Olsen G J, Waddell P J, Hillis D M. Molecular Systematics. Sunderland, MA: Sinauer; 1996. pp. 407–514. [Google Scholar]
- [6]Philippe H, Chenuil A, Adoutte A. Development (Cambridge, UK) 1994;1994,Suppl.:15–25. [Google Scholar]
- [10]Barnes R D. In: Invertebrate Zoology. Barnes R D, editor. Philadelphia: Saunders College; 1985. pp. 58–70. [Google Scholar]
- [11]Hyman L H. The Invertebrates. New York: McGraw–Hill; 1940. pp. 22–43. [Google Scholar]
- [13]Cavalier-Smith T, Allsopp M T E P, Chao E E, Boury-Esnault N, Vacelet J. Can J Zool. 1996;74:2031–2045. [Google Scholar]
- [18]Cuvier G. Le Règne Animal Distribué Selon son Organisation. Paris: Deterville; 1817. [Google Scholar]
- [20]Brusca R C, Brusca G J. Invertebrates. Sunderland, MA: Sinauer; 1990. pp. 879–889. [Google Scholar]
- [21]Eernisse D J, Albert J S, Anderson F E. Syst Biol. 1992;41:305–330. [Google Scholar]
- [23]Nielsen C, Scharff N, Eibye-Jacobsen D. Biol J Linn Soc. 1996;57:385–410. [Google Scholar]
- [31]Wallace R L, Ricci C, Melone G. Invertebr Biol. 1996;115:104–112. [Google Scholar]
- [34]Balavoine G, Adoutte A. Science. 1998;280:397–398. [Google Scholar]
- [35]Balavoine G. Am Zool. 1998;38:843–858. [Google Scholar]
- [39]Berney, C., Pawlowski, J. & Zaninetti, L. (2000) Mol. Biol. Evol., in press. [DOI] [PubMed]
- [46]Conway Morris S. Development (Cambridge, UK) 1994;1994,Suppl.:1–13. [Google Scholar]
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Adl, S., Simpson, A., Farmer, M. A., Andersen, R., Anderson, O., Barta, J. R., Bowser, S., Brugerolle, G., Fensome, R., Fredericq, S., et al. (2005) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2005.00053.x · Cited by 1,749 · see citing works
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Putnam, N. H., Srivastava, M., Hellsten, U., Dirks, B., Chapman, J., Salamov, A., Terry, A., Shapiro, H., Lindquist, E., Kapitonov, V. V., et al. (2007) · Science · doi:10.1126/science.1139158 · Cited by 1,555 · see citing works
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Ruiz‐Trillo, I., Paps, J., Loukota, M., Ribera, C., Jondelius, U., Baguñà, J., & Riutort, M. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.172390199 · Cited by 243 · see citing works
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Bernt, M., Bleidorn, C., Braband, A., Dambach, J., Donath, A., Fritzsch, G., Golombek, A., Hadrys, H., Jühling, F., Meusemann, K., et al. (2013) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2013.05.002 · Cited by 239 · see citing works
Drosophila melanogaster in the Study of Human Neurodegeneration
Hirth, F. (2010) · CNS & Neurological Disorders - Drug Targets · doi:10.2174/187152710791556104 · Cited by 236 · see citing works
Additional molecular support for the new chordate phylogeny
Delsuc, F., Tsagkogeorga, G., Lartillot, N., & Philippe, H. (2008) · genesis · doi:10.1002/dvg.20450 · Cited by 231 · see citing works
Self-citationHerpin, A. (2003) · Developmental & Comparative Immunology · doi:10.1016/j.dci.2003.09.007 · Cited by 227 · see citing works
Dolja, V. V., & Koonin, E. V. (2017) · Virus Research · doi:10.1016/j.virusres.2017.10.020 · Cited by 219 · see citing works
The evolutionary position of nematodes
Blair, J. E., Ikeo, K., Gojobori, T., & Hedges, S. B. (2002) · BMC Evolutionary Biology · doi:10.1186/1471-2148-2-7 · Cited by 218 · see citing works
Phylogenetic analysis of the human basic helix-loop-helix proteins
Ledent, V., Paquet, O., & Vervoort, M. (2002) · Genome biology · doi:10.1186/gb-2002-3-6-research0030 · Cited by 208 · see citing works
Choanoflagellates, choanocytes, and animal multicellularity
Maldonado, M. (2004) · Invertebrate Biology · doi:10.1111/j.1744-7410.2004.tb00138.x · Cited by 207 · see citing works
Invertebrate Muscles: Muscle Specific Genes and Proteins
Hooper, S. L., & Thuma, J. B. (2005) · Physiological Reviews · doi:10.1152/physrev.00019.2004 · Cited by 190 · see citing works
Mineta, K., Nakazawa, M., Cebrià, F., Ikeo, K., Agata, K., & Gojobori, T. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1332513100 · Cited by 189 · see citing works
Precambrian animal diversity: Putative phosphatized embryos from the Doushantuo Formation of China
Chen, J.-Y., Oliveri, P., Li, C.-W., Zhou, G.-Q., Gao, F., Hagadorn, J. W., Peterson, K. J., & Davidson, E. H. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.9.4457 · Cited by 187 · see citing works
Parasites within the new phylogeny of eukaryotes
Meeûs, T. D., & François Renaud, A. (2002) · Trends in Parasitology · doi:10.1016/s1471-4922(02)02269-9 · Cited by 184 · see citing works
Insect glutathione transferases
Ketterman, A. J., Saisawang, C., & Wongsantichon, J. (2011) · Drug Metabolism Reviews · doi:10.3109/03602532.2011.552911 · Cited by 184 · see citing works
The Nemertodermatida are basal bilaterians and not members of the Platyhelminthes
Jondelius, U., Ruiz‐Trillo, I., Baguñà, J., & Riutort, M. (2002) · Zoologica Scripta · doi:10.1046/j.1463-6409.2002.00090.x · Cited by 182 · see citing works
Prud’homme, B., de Rosa, R., Arendt, D., Julien, J.-F., Pajaziti, R., Dorresteijn, A. W. C., Adoutte, A., Wittbrodt, J., & Balavoine, G. (2003) · Current Biology · doi:10.1016/j.cub.2003.10.006 · Cited by 180 · see citing works
Self-citationImprovement of molecular phylogenetic inference and the phylogeny of Bilateria
Lartillot, N., & Philippe, H. (2008) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2007.2236 · Cited by 178 · see citing works
Self-citationLarge-scale sequencing and the new animal phylogeny
Philippe, H., & Telford, M. J. (2006) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2006.08.004 · Cited by 177 · see citing works
BMP signaling regulates the dorsal planarian midline and is needed for asymmetric regeneration
Reddien, P. W., Bermange, A. L., Kicza, A. M., & Alvarado, A. S. (2007) · Development · doi:10.1242/dev.007138 · Cited by 175 · see citing works
Unusual gene order and organization of the sea urchin hox cluster
Cameron, R. A., Rowen, L., Nesbitt, R., Bloom, S., Rast, J. P., Berney, K., Arenas‐Mena, C., Martı́nez, P., Lucas, S. M., Richardson, P. M., et al. (2005) · Journal of Experimental Zoology Part B Molecular and Developmental Evolution · doi:10.1002/jez.b.21070 · Cited by 173 · see citing works
Telford, M. J. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msi099 · Cited by 172 · see citing works
Chordate evolution and the three-phylum system
Satoh, N., Rokhsar, D. S., & Nishikawa, T. (2014) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2014.1729 · Cited by 170 · see citing works
Philip, G. K., Creevey, C. J., & McInerney, J. O. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msi102 · Cited by 170 · see citing works
Precambrian Animal Life: Probable Developmental and Adult Cnidarian Forms from Southwest China
Chen, J.-Y., Oliveri, P., Gao, F., Dornbos, S. Q., Li, C.-W., Bottjer, D. J., & Davidson, E. H. (2002) · Developmental Biology · doi:10.1006/dbio.2002.0714 · Cited by 165 · see citing works
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Hadfield, M. G. ., Carpizo‐Ituarte, E., del Carmen, K. A., & Nedved, B. T. (2001) · American Zoologist · doi:10.1093/icb/41.5.1123 · Cited by 165 · see citing works
Common design in a unique midline neuropil in the brains of arthropods
Loesel, R., Nässel, D. R., & Strausfeld, N. J. (2002) · Arthropod Structure & Development · doi:10.1016/s1467-8039(02)00017-8 · Cited by 163 · see citing works
Evolution of centralized nervous systems: Two schools of evolutionary thought
Northcutt, R. G. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1201889109 · Cited by 141 · see citing works
Lichtneckert, R., & Reichert, H. (2005) · Heredity · doi:10.1038/sj.hdy.6800664 · Cited by 153 · see citing works
Telford, M. J., Lockyer, A. E., Cartwright–Finch, C., & Littlewood, D. T. J. (2003) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2003.2342 · Cited by 151 · see citing works
Brachyury, the blastopore and the evolution of the mesoderm
Technau, U. (2001) · BioEssays · doi:10.1002/bies.1114 · Cited by 145 · see citing works
Acoel Flatworms Are Not Platyhelminthes: Evidence from Phylogenomics
Philippe, H., Brinkmann, H., Martı́nez, P., Riutort, M., & Baguñà, J. (2007) · PLoS ONE · doi:10.1371/journal.pone.0000717 · Cited by 148 · see citing works
Poriferan mtDNA and Animal Phylogeny Based on Mitochondrial Gene Arrangements
Lavrov, D. V., & Lang, B. F. (2005) · Systematic Biology · doi:10.1080/10635150500221044 · Cited by 147 · see citing works
de Peer, Y. V., Baldauf, S. L., Doolittle, W. F., & Meyer, A. (2000) · Journal of Molecular Evolution · doi:10.1007/s002390010120 · Cited by 148 · see citing works
Hox clusters and bilaterian phylogeny
Balavoine, G., de Rosa, R., & Adoutte, A. (2002) · Molecular Phylogenetics and Evolution · doi:10.1016/s1055-7903(02)00237-3 · Cited by 142 · see citing works
Self-citationThe phylogenetic position of the comb jellies (Ctenophora) and the importance of taxonomic sampling
Wållberg, A., Thollesson, M., Farris, J. S., & Jondelius, U. (2004) · Cladistics · doi:10.1111/j.1096-0031.2004.00041.x · Cited by 141 · see citing works
New sites of Chengjiang fossils: crucial windows on the Cambrian explosion
Zhang, X., Shu, D., Li, Y., & Han, J. (2001) · Journal of the Geological Society · doi:10.1144/jgs.158.2.211 · Cited by 140 · see citing works
Triggers for the Cambrian explosion: Hypotheses and problems
Zhang, X., Shu, D., Han, J., Zhang, Z., Liu, J., & Fu, D. (2014) · Gondwana Research · doi:10.1016/j.gr.2013.06.001 · Cited by 140 · see citing works
Paps, J., Baguñà, J., & Riutort, M. (2009) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2008.1574 · Cited by 138 · see citing works
Chaetognath phylogenomics: a protostome with deuterostome-like development
Marlétaz, F., Martin, E., Perez, Y., Papillon, D., Caubit, X., Lowe, C. J., Freeman, B., Fasano, L., Dossat, C., Wincker, P., et al. (2006) · Current Biology · doi:10.1016/j.cub.2006.07.016 · Cited by 138 · see citing works
Bely, A. E., & Wray, G. A. (2001) · Development · doi:10.1242/dev.128.14.2781 · Cited by 135 · see citing works
Papillon, D., Perez, Y., Caubit, X., & Parco, Y. L. (2004) · Molecular Biology and Evolution · doi:10.1093/molbev/msh229 · Cited by 134 · see citing works
caudal and even‐skipped in the annelid Platynereis dumerilii and the ancestry of posterior growth
de Rosa, R., Prud’homme, B., & Balavoine, G. (2005) · Evolution & Development · doi:10.1111/j.1525-142x.2005.05061.x · Cited by 134 · see citing works
Self-citationThe Segmented Urbilateria: A Testable Scenario
Balavoine, G. (2003) · Integrative and Comparative Biology · doi:10.1093/icb/43.1.137 · Cited by 131 · see citing works
Self-citationDevelopmental Signaling in Hydra: What Does It Take to Build a “Simple” Animal?
Steele, R. E. (2002) · Developmental Biology · doi:10.1006/dbio.2002.0744 · Cited by 129 · see citing works
Nematoda: Genes, Genomes and the Evolution of Parasitism
Blaxter, M. (2003) · Advances in Parasitology/Advances in parasitology · doi:10.1016/s0065-308x(03)54003-9 · Cited by 127 · see citing works
Zrzavý, J., Hypša, V., & Tietz, D. F. (2001) · Cladistics · doi:10.1006/clad.2000.0148 · Cited by 128 · see citing works
Characterization of a C3-like cDNA in a coral: phylogenetic implications
Dishaw, L. J., Smith, S. L., & Bigger, C. H. (2005) · Immunogenetics · doi:10.1007/s00251-005-0005-1 · Cited by 127 · see citing works
Tautz, D. (2004) · Developmental Cell · doi:10.1016/j.devcel.2004.08.008 · Cited by 127 · see citing works
Gastrotricha and metazoan phylogeny
Zrzavý, J. (2002) · Zoologica Scripta · doi:10.1046/j.1463-6409.2003.00104.x · Cited by 122 · see citing works
Parallel evolution of segmentation by co‐option of ancestral gene regulatory networks
Chipman, A. D. (2009) · BioEssays · doi:10.1002/bies.200900130 · Cited by 122 · see citing works
On the evolution of bilaterality
Genikhovich, G., & Technau, U. (2017) · Development · doi:10.1242/dev.141507 · Cited by 121 · see citing works
The origin and evolution of the nervous system
Ghysen, A. (2003) · The International Journal of Developmental Biology · doi:10.1387/ijdb.14756331 · Cited by 120 · see citing works
Evolutionary aspects of octopaminergic systems with emphasis on arthropods
Pflüger, H., & Stevenson, P. A. (2005) · Arthropod Structure & Development · doi:10.1016/j.asd.2005.04.004 · Cited by 120 · see citing works
Zrzavý, J. (2001) · Folia Parasitologica · doi:10.14411/fp.2001.013 · Cited by 120 · see citing works
Tasiemski, A., Vandenbulcke, F., Mitta, G., Lemoine, J., Lefebvre, C., Sautière, P. E., & Salzet, M. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m312156200 · Cited by 118 · see citing works
- Authors
- Adoutte, A., Balavoine, G., Lartillot, N., Lespinet, O., Prud'homme, B., & de Rosa, R.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Centre de Génétique Moléculaire, Centre National de la Recherche Scientifique, Bâtiment 26, 91198 Gif-sur-Yvette Cedex, France
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2000-04-25
- Volume
- 97
- Issue
- 9
- Pages
- 4453-4456
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC34321
- OpenAlex
- W2162160001
- Cited by
- 512
- References
- 48
- Citations by year
- 2026: 5 · 2025: 4 · 2024: 6 · 2023: 3 · 2022: 9 · 2021: 4 · 2020: 2 · 2019: 11 · 2018: 4 · 2017: 6 · 2016: 10 · 2015: 11 · 2014: 15 · 2013: 12 · 2012: 19
- FWCI
- 7.08
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- HAL (submittedVersion)
- Topics
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Marine Invertebrate Physiology and Ecology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protist diversity and phylogeny
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- animal phylogeny, DNA sequence analysis, evolutionary intermediates, taxonomic reclassification
- MeSH terms
- Animals, DNA, Biological Evolution, Genes, Homeobox, Invertebrates, Molecular Biology, Phylogeny, Vertebrates, Reproducibility of Results, Evolution, Molecular
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