Mutations at the Qo Site of the Cytochrome bc1 Complex Strongly Affect Oxygen Binding

VMD: visual molecular dynamics

Humphrey, W., Dalke, A., & Schulten, K. (1996) · Journal of Molecular Graphics · doi:10.1016/0263-7855(96)00018-5 · Cited by 66,952 · see citing works

Comparison of simple potential functions for simulating liquid water

Jorgensen, W. L., Chandrasekhar, J., Madura, J., Impey, R., & Klein, M. (1983) · The Journal of Chemical Physics · doi:10.1063/1.445869 · Cited by 38,335 · see citing works

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

Darden, T., York, D., & Pedersen, L. (1993) · The Journal of Chemical Physics · doi:10.1063/1.464397 · Cited by 29,588 · see citing works

Scalable molecular dynamics with NAMD

Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kalé, L., & Schulten, K. (2005) · Journal of Computational Chemistry · doi:10.1002/jcc.20289 · Cited by 16,914 · see citing works

Die Berechnung optischer und elektrostatischer Gitterpotentiale

Ewald, P. P. (1921) · Annalen der Physik · doi:10.1002/andp.19213690304 · Cited by 6,072 · see citing works

Constant pressure molecular dynamics algorithms

Martyna, G. J., Tobias, D. J., & Klein, M. L. (1994) · The Journal of Chemical Physics · doi:10.1063/1.467468 · Cited by 5,845 · see citing works

Constant pressure molecular dynamics simulation: The Langevin piston method

Feller, S., Zhang, Y., Pastor, R., & Brooks, B. (1995) · The Journal of Chemical Physics · doi:10.1063/1.470648 · Cited by 4,267 · see citing works

Extending the treatment of backbone energetics in protein force fields: Limitations of gas‐phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations

MacKerell, A. D., Feig, M., & Brooks, C. L. (2004) · Journal of Computational Chemistry · doi:10.1002/jcc.20065 · Cited by 3,336 · see citing works

Empirical force fields for biological macromolecules: Overview and issues

MacKerell, A. D. (2004) · Journal of Computational Chemistry · doi:10.1002/jcc.20082 · Cited by 1,263 · see citing works

Harper's Illustrated Biochemistry

Murray, R. K. (1988) · Repository of the University of Ljubljana (University of Ljubljana) · Cited by 1,223 · see citing works

The sites and topology of mitochondrial superoxide production

Brand, M. D. (2010) · Experimental Gerontology · doi:10.1016/j.exger.2010.01.003 · Cited by 1,217 · see citing works

Electron transfer by domain movement in cytochrome bc1

Zhang, Z., Huang, L.-S., Shulmeister, V. M., Chi, Y., Kim, K. K., Hung, L., Crofts, A. R., Berry, E. A., & Kim, S. (1998) · Nature · doi:10.1038/33612 · Cited by 1,059 · see citing works

ATP synthesis by oxidative phosphorylation

Senior, A. E. (1988) · Physiological Reviews · doi:10.1152/physrev.1988.68.1.177 · Cited by 633 · see citing works

The protonmotive Q cycle: A general formulation

Mitchell, P. D. (1975) · FEBS Letters · doi:10.1016/0014-5793(75)80359-0 · Cited by 626 · see citing works

Heme Protein Assemblies

Reedy, C. J., & Gibney, B. R. (2004) · Chemical Reviews · doi:10.1021/cr0206115 · Cited by 397 · see citing works

The mechanism of mitochondrial superoxide production by the cytochrome bc1 complex

Dröse, S., & Brandt, U. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m803236200 · Cited by 386 · see citing works

The Protonmotive Q Cycle in Mitochondria and Bacteria

Brandt, U., & Trumpower, B. L. (1994) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.3109/10409239409086800 · Cited by 354 · see citing works

Mitochondrial Oxygen Affinity, Respiratory Flux Control And Excess Capacity Of Cytochrome c Oxidase

Gnaiger, E., Lassnig, B., Kuznetsov, A. V., Rieger, G. E., & Margreiter, R. (1998) · Journal of Experimental Biology · doi:10.1242/jeb.201.8.1129 · Cited by 318 · see citing works

Isolation and properties of an iron-protein from the (reduced coenzyme Q)-cytochrome C reductase complex of the respiratory chain

Rieske, J. S., MacLennan, D. H., & COLEMAN, R. (1964) · Biochemical and Biophysical Research Communications · doi:10.1016/0006-291x(64)90171-8 · Cited by 257 · see citing works

X-Ray Structure of Rhodobacter Capsulatus Cytochrome bc 1: Comparison with its Mitochondrial and Chloroplast Counterparts

Berry, E. A., Huang, L.-S., Saechao, L. K., Pon, N. G., Valkova-Valchanova, M. B., & Daldal, F. (2004) · Photosynthesis Research · doi:10.1023/b:pres.0000036888.18223.0e · Cited by 201 · see citing works

Electronic Connection Between the Quinone and Cytochrome c Redox Pools and Its Role in Regulation of Mitochondrial Electron Transport and Redox Signaling

Sarewicz, M., & Osyczka, A. (2014) · Physiological Reviews · doi:10.1152/physrev.00006.2014 · Cited by 173 · see citing works

A semiquinone intermediate generated at the Q o site of the cytochrome bc 1 complex: Importance for the Q-cycle and superoxide production

Cape, J. L., Bowman, M. K., & Kramer, D. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0702621104 · Cited by 172 · see citing works

Mechanism of Ubiquinol Oxidation by the bc1 Complex: Different Domains of the Quinol Binding Pocket and Their Role in the Mechanism and Binding of Inhibitors

Crofts, A. R., Barquera, B., Gennis, R. B., Kuras, R., Guergova-Kuras, M., & Berry, E. A. (1999) · Biochemistry · doi:10.1021/bi990962m · Cited by 158 · see citing works

Uncovering the [2Fe2S] domain movement in cytochrome bc 1 and its implications for energy conversion

Darrouzet, É., Valkova-Valchanova, M. B., Moser, C. C., Dutton, P. L., & Daldal, F. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.9.4567 · Cited by 151 · see citing works

Thebc 1 complexes ofRhodobacter sphaeroides andRhodobacter capsulatus

Gennis, R. B., Barquera, B., Hacker, B. M., Doren, S. R. V., Arnaud, S., Crofts, A. R., Davidson, E., Gray, K. A., & Daldal, F. (1993) · Journal of Bioenergetics and Biomembranes · doi:10.1007/bf00762582 · Cited by 145 · see citing works

Structure and function of the cytochrome bc1 complex of mitochondria and photosynthetic bacteria

Crofts, A. R., & Berry, E. A. (1998) · Current Opinion in Structural Biology · doi:10.1016/s0959-440x(98)80129-2 · Cited by 110 · see citing works

Proton pumping in the bc1 complex: A new gating mechanism that prevents short circuits

Crofts, A. R., Lhee, S., Crofts, S. B., Cheng, J., & Rose, S. W. (2006) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2006.02.009 · Cited by 108 · see citing works

Membrane Potential Greatly Enhances Superoxide Generation by the Cytochrome bc1 Complex Reconstituted into Phospholipid Vesicles

Rottenberg, H., Covián, R., & Trumpower, B. L. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.017376 · Cited by 102 · see citing works

Ubiquinol oxidation in the cytochrome bc1 complex: Reaction mechanism and prevention of short-circuiting

Mulkidjanian, A. Y. (2005) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2005.03.009 · Cited by 93 · see citing works

Tyrosine Residues That Control Binding and Gating in the 5-Hydroxytryptamine3Receptor Revealed by Unnatural Amino Acid Mutagenesis

Beene, D. L., Price, K. L., Lester, H. A., Dougherty, D. A., & Lummis, S. C. R. (2004) · Journal of Neuroscience · doi:10.1523/jneurosci.2429-04.2004 · Cited by 91 · see citing works

Evidence for the Head Domain Movement of the Rieske Iron-Sulfur Protein in Electron Transfer Reaction of the Cytochromebc1 Complex

Tian, H., White, S., Yu, L. P. C., & Yu, C. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.11.7146 · Cited by 81 · see citing works

The Tyrosine Gate as a Potential Entropic Lever in the Receptor-Binding Site of the Bacterial Adhesin FimH

Wellens, A., Lahmann, M., Touaibia, M., Vaucher, J., Oscarson, S., Roy, R., Remaut, H. K., & Bouckaert, J. M. J. (2012) · Biochemistry · doi:10.1021/bi300251r · Cited by 80 · see citing works

The Mechanism of the Ubiquinol: Cytochrome c Oxidoreductases of Mitochondria and of Rhodopseudomonas sphaeroides

Crofts, A. R. (1985) · Springer eBooks · doi:10.1007/978-1-4684-4604-3_10 · Cited by 72 · see citing works

The Modified Q-cycle Explains the Apparent Mismatch between the Kinetics of Reduction of Cytochromes c 1 and b H in the bc 1 Complex

Crofts, A. R., Shinkarev, V. P., Kolling, D. R. J., & Hong, S. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m305461200 · Cited by 71 · see citing works

Organization and structure of the genes for the cytochromeb/c 1 complex in purple photosynthetic bacteria. A phylogenetic study describing the homology of theb/c 1 subunits between prokaryotes, mitochondria, and chloroplasts

Gabellini, N. (1988) · Journal of Bioenergetics and Biomembranes · doi:10.1007/bf00762138 · Cited by 59 · see citing works

Exploration of Ligands to the Qi Site Semiquinone in the bc 1 Complex Using High-resolution EPR

Kolling, D. R. J., Samoilova, R. I., Holland, J. T., et al. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m305913200 · Cited by 57 · see citing works

Identification of Ubiquinol Binding Motifs at the Q o -Site of the Cytochrome bc 1 Complex

Barragan, A. M., Crofts, A. R., Schulten, K., et al. (2014) · The Journal of Physical Chemistry B · doi:10.1021/jp510022w · Cited by 46 · see citing works

Loss of a Conserved Tyrosine Residue of Cytochrome b Induces Reactive Oxygen Species Production by Cytochrome bc1

Lee, D., Selamoglu, N., Lanciano, P., Cooley, J. W., Forquer, I., Kramer, D., & Daldal, F. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.214460 · Cited by 41 · see citing works

Key role of water in proton transfer at the Qo-site of the cytochrome bc1 complex predicted by atomistic molecular dynamics simulations

Postila, P. A., Kaszuba, K., Sarewicz, M., Osyczka, A., Vattulainen, I., & Róg, T. (2013) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2013.02.005 · Cited by 41 · see citing works

Protein−Protein Interactions between Cytochrome b and the Fe-S Protein Subunits during QH2 Oxidation and Large-Scale Domain Movement in the bc1 Complex

Darrouzet, É., & Daldal, F. (2003) · Biochemistry · doi:10.1021/bi026656h · Cited by 38 · see citing works

Spontaneous Binding of Molecular Oxygen at the Qo-Site of the bc1 Complex Could Stimulate Superoxide Formation

Husen, P., & Solov’yov, I. A. (2016) · Journal of the American Chemical Society · doi:10.1021/jacs.6b04849 · Cited by 35 · see citing works

Superoxide production by cytochrome bc1 complex: A mathematical model

Guillaud, F., Dröse, S., Kowald, A., Brandt, U., & Klipp, E. (2014) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2014.05.358 · Cited by 32 · see citing works

Insight into the Properties of Cardiolipin Containing Bilayers from Molecular Dynamics Simulations, Using a Hybrid All-Atom/United-Atom Force Field

Aguayo, D., González-Nilo, F. D., & Chipot, C. J. (2012) · Journal of Chemical Theory and Computation · doi:10.1021/ct200849k · Cited by 32 · see citing works

Mechanism of the Primary Charge Transfer Reaction in the Cytochrome bc1 Complex

Barragan, A. M., Schulten, K. J., & Solov’yov, I. A. (2016) · The Journal of Physical Chemistry B · doi:10.1021/acs.jpcb.6b07394 · Cited by 30 · see citing works

Atomistic determinants of co-enzyme Q reduction at the Qi-site of the cytochrome bc1 complex

Postila, P. A., Kaszuba, K., Kuleta, P., et al. (2016) · Scientific Reports · doi:10.1038/srep33607 · Cited by 28 · see citing works

Parameterization of the prosthetic redox centers of the bacterial cytochrome bc 1 complex for atomistic molecular dynamics simulations

Kaszuba, K., Postila, P. A., Cramariuc, O. T., Sarewicz, M., Osyczka, A., Vattulainen, I., & Róg, T. (2013) · Theoretical Chemistry Accounts · doi:10.1007/s00214-013-1370-8 · Cited by 24 · see citing works

Charge Transfer at the Q_o-Site of the Cytochrome <i>bc</i>₁ Complex Leads to Superoxide Production

Salo, A. B., Husen, P., & Solov’yov, I. A. (2017) · The Journal of Physical Chemistry B · doi:10.1021/acs.jpcb.6b10403 · Cited by 21 · see citing works

A possible biological role of the electron transfer between tyrosine and tryptophan

Lee, C.-Y. (1992) · FEBS Letters · doi:10.1016/0014-5793(92)80228-9 · Cited by 19 · see citing works

Saccharomyces cerevisiae-Based Mutational Analysis of the bc 1 Complex Q o Site Residue 279 To Study the Trade-Off between Atovaquone Resistance and Function

Song, Z., Clain, J., Iorga, B. I., Zhou, Y., Fisher, N. E., & Meunier, B. (2015) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00710-15 · Cited by 13 · see citing works

Quantum effects in the brain: A review

Adams, B., & Petruccione, F. (2020) · AVS Quantum Science · doi:10.1116/1.5135170 · Cited by 80 · see citing works

Charge Transfer at the Q_o-Site of the Cytochrome <i>bc</i>₁ Complex Leads to Superoxide Production

Salo, A. B., Husen, P., & Solov’yov, I. A. (2017) · The Journal of Physical Chemistry B · doi:10.1021/acs.jpcb.6b10403 · Cited by 21 · see citing works

Assessing the Initial Pleasantness for Fading Affect, Fixed Affect, Flourishing Affect, and Flexible Affect Events

Gibbons, J. A., & Rollins, L. (2016) · Applied Cognitive Psychology · doi:10.1002/acp.3295 · Cited by 8 · see citing works

Self-Regulation of Affect–Health Behavior Relations

Sheeran, P., Webb, T. L., Gollwitzer, P. M., et al. (2018) · Oxford University Press eBooks · doi:10.1093/oso/9780190499037.003.0005 · Cited by 8 · see citing works

Socially shared affect: Shared affect, affect sharing, and affective processing in groups.

Hinsz, V. B., & Bui, L. T. T. (2023) · Group Dynamics Theory Research and Practice · doi:10.1037/gdn0000207 · Cited by 28 · see citing works

The Influence of Affect on Health Decisions

Peters, E. M., & Meilleur, L. R. (2016) · Springer eBooks · doi:10.1007/978-1-4939-3486-7_8 · Cited by 3 · see citing works

Relationships Between Affect, Patronage Frequency and Amount of Money Spent With a Comment on Affect Scaling and Measurement

Golden, L. L., & Zimmer, M. R. (1986) · ACR North American Advances · Cited by 26 · see citing works