Proteome Integral Solubility Alteration: A High-Throughput Proteomics Assay for Target Deconvolution
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Abstract
Various agents, including drugs as well as nonmolecular stimuli, induce alterations in the physicochemical properties of proteins in cell lysates, living cells, and organisms. These alterations can be probed by applying a stability- and solubility-modifying factor, such as elevated temperature, to a varying degree. As a second dimension of variation, drug concentration or agent intensity/concentration can be used. Compared to standard approaches where curves are fitted to protein solubility data acquired at different temperatures and drug concentrations, Proteome Integral Solubility Alteration (PISA) assay increases the analysis throughput by 1 to 2 orders of magnitude for an unlimited number of factor variation points in such a scheme. The consumption of the compound and biological material decreases in PISA by the same factor. We envision widespread use of the PISA approach in chemical biology and drug development.
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The PISA assay was performed with biological triplicates.
“We performed the PISA assay with biological triplicates to identify LNP’s target in C. auris, as previously described [30].”
From Lansoprazole interferes with fungal respiration and acts synergistically with amphotericin B against multidrug-resistant <i>Candida auris</i> (2024) · cites this paper as [30]
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- Authors
- Gaetani, M., Sabatier, P., Saei, A. A., Beusch, C. M., Yang, Z., Lundström, S. L., & Zubarev, R. A.
- Affiliations
- Science for Life Laboratory (SE)
- Karolinska Institutet (SE)
- Sechenov University (RU)
- Corresponding author
- Zubarev, Roman A.
- ORCID
- Venue
- Journal of Proteome Research
- Publisher
- American Chemical Society (ACS)
- Published
- 2019-09-23
- Volume
- 18
- Issue
- 11
- Pages
- 4027-4037
- ISSN
- 1535-3893 (ISSN-L)
- 1535-3907
- OpenAlex
- W2976915124
- Cited by
- 287
- References
- 54
- Citations by year
- 2026: 47 · 2025: 44 · 2024: 60 · 2023: 52 · 2022: 36 · 2021: 26 · 2020: 17 · 2019: 3 · 2018: 1
- FWCI
- 8.17
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Licence
- Locations
- Journal of Proteome Research (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Funders
- Science for Life Laboratory
- Vetenskapsr?det
- Karolinska Institutet
- Topics
- Physical Sciences › Chemistry › Spectroscopy › Advanced Proteomics Techniques and Applications
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein purification and stability
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Advanced Biosensing Techniques and Applications
- Keywords
- protein solubility, protein stability, target deconvolution, high-throughput proteomics, chemical biology, drug development, protein physicochemical properties
- MeSH terms
- A549 Cells, Algorithms, Antimetabolites, Chromatography, Liquid, Fluorouracil, Humans, Methotrexate, Protease Inhibitors, Solubility, Temperature, Reproducibility of Results, Proteome, Proteomics, Cell Line, Tumor, Tandem Mass Spectrometry, Protein Stability, High-Throughput Screening Assays
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