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Development of Selective Histone Deacetylase 6 (HDAC6) Degraders Recruiting Von Hippel–Lindau (VHL) E3 Ubiquitin Ligase
Open accessAbstract
Histone deacetylase 6 (HDAC6) is involved in multiple cellular processes such as aggresome formation, protein stability, and cell motility. Numerous HDAC6-selective inhibitors have been developed as cellular chemical tools to elucidate the function of HDAC6. Since HDAC6 has multiple domains that cannot be studied by HDAC6-selective inhibitors, CRISPR-CAS9 and siRNA/shRNA have been employed to elucidate the nonenzymatic functions of HDAC6. However, these genetic methods have many limitations. Proteolysis targeting chimera (PROTAC) is an emerging technology for the development of small molecules that can quickly remove the entire protein in cells. We previously developed multifunctional HDAC6 degraders that can recruit cereblon (CRBN) E3 ubiquitin ligase. These HDAC6 degraders can degrade not only HDAC6 but also neo-substrates of CRBN. They are excellent candidates for the development of anticancer therapeutics, but the multifunctional nature of the CRBN-based HDAC6 degraders has limited their utility as specific chemical probes for the study of HDAC6-related cellular pathways. Herein we report the development of the first cell-permeable HDAC6-selective degraders employing Von Hippel–Lindau (VHL) E3 ubiquitin ligase, which does not have any known neo-substrates. The DC 50 ’s of the most potent compound 3j are 7.1 nM and 4.3 nM in human MM1S and mouse 4935 cell lines, respectively. The D max ’s of 3j in these two cell lines are 90% and 57%, respectively.
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“First, STAT3 protein degradation can be achieved more efficiently and sustainably than technologies that use STAT3 mRNA with the characteristic of rapid degradation (50, 51).”
From Small-molecule PROTAC mediates targeted protein degradation to treat STAT3-dependent epithelial cancer (2022) · cites this paper as [50]
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“CRBN-based PROTACs recruiting a pan-HDAC inhibitor AB3 or a HDAC6 selective binder nexturastat A resulted in specific degradation of HDAC6.”
From Proteolysis targeting chimeras (PROTACs) are emerging therapeutics for hematologic malignancies (2020) · cites this paper as [135]
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PROTAC‐Based HDAC Degradation: A Paradigm Shift in Targeted Epigenetic Therapies
Himaja, A., Halder, D., Banerjee, S., Biswas, S., Adhikari, N., & Ghosh, B. (2025) · ChemMedChem · doi:10.1002/cmdc.202500203 · Cited by 9
Histone deacetylase 6: a potential therapeutic target for drug development
Li, Z., Zhu, H., Wang, X., Zhang, L., & Zhang, L. (2025) · Bioorganic Chemistry · doi:10.1016/j.bioorg.2025.108932 · Cited by 7
Zahid, S., Ali, Y., & Rashid, S. (2023) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2023.2183037 · Cited by 7
Toosendanin: upgrade of an old agent in cancer treatment
Shuwei, L. I., XIONG, Q., Yiwen, S. H. E. N., Lin, J., Zhang, L., Wu, Y., Jin, J., & Luan, X. (2024) · Chinese Journal of Natural Medicines · doi:10.1016/s1875-5364(24)60693-x · Cited by 7
Márquez-Cantudo, L., Ramos, A., Coderch, C., & de Pascual‐Teresa, B. (2021) · Molecules · doi:10.3390/molecules26185606 · Cited by 8
Chen, P., & Zhang, Y. (2026) · Discover Oncology · doi:10.1007/s12672-026-04391-9 · Cited by 8
Liu, Y., Ullah, I., Yuan, Y., & Wang, J. (2026) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2026.115776 · Cited by 6
Ye, P., Leu, W., Yeh, T. Y., Hsu, Y., Lin, Y., Wei, Z., Chen, Y., Chiang, Y., Hsu, J., Chan, S., et al. (2024) · The Prostate · doi:10.1002/pros.24678 · Cited by 6
Therapeutic indications for HDAC6 inhibitors in the peripheral and central nervous disorders
van Eyll, J. M., Prior, R. C., Célanire, S., Bosch, L. V. D., & Rombouts, F. J. R. (2024) · Expert Opinion on Therapeutic Targets · doi:10.1080/14728222.2024.2404571 · Cited by 8
Chemical Biology Tools for Protein Lysine Acylation
Xie, Y., Du, S., Liu, Z., Liu, M., Xu, Z., Wang, X., Kee, J. X., Yi, F., Sun, H., & Yao, S. Q. (2022) · Angewandte Chemie · doi:10.1002/ange.202200303 · Cited by 6
Roatsch, M., Vogelmann, A., Herp, D., Jung, M., & Olsen, C. A. (2020) · ChemRxiv · doi:10.26434/chemrxiv.12416303 · Cited by 6
Cursaro, I., Ciccone, V., Tudino, V., Papulino, C., Scalvini, L., Donnini, S., Morbidelli, L., Bini, L., Landi, C., Contri, C., et al. (2025) · European Journal of Medicinal Chemistry Reports · doi:10.1016/j.ejmcr.2025.100276 · Cited by 5
Discovery of a KLHL41 Ligand for Muscle Specific Protein Degradation
Yim, J., Lee, J., Kim, S., Choi, J., Yoon, S., Cho, H., Jung, S., Yoo, G., Lee, S., Park, H., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-73252-4 · Cited by 5
Sinatra, L., Yang, J., Schliehe‐Diecks, J., Dienstbier, N., Vogt, M., Gebing, P., Bachmann, L. M., Sönnichsen, M., Lenz, T., Stühler, K., et al. (2022) · ChemRxiv · doi:10.26434/chemrxiv-2022-dntx4-v2 · Cited by 5
Lin, C., Hsu, J., Hsu, Y., Fan, K.-C., Wu, S., Lin, M., Guh, J., & Yu, C. (2025) · Journal of Enzyme Inhibition and Medicinal Chemistry · doi:10.1080/14756366.2025.2468355 · Cited by 3
Sun, S., Yue, K., Liu, E., Sheng, D., Chen, Y., Li, T., Shen, A., Jia, G., Jiang, Y., & Li, X. (2025) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.5c02554 · Cited by 3
Prospects and advances of PROTAC in the treatment of hematologic malignancies
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Advantages of PROTACs in achieving selective degradation of homologous protein families
Yang, L., Mao, X., Zhang, J., Shu, J., Huang, W., Dong, X., Chen, Y., & Wu, M. (2026) · Beilstein Journal of Organic Chemistry · doi:10.3762/bjoc.22.49 · Cited by 3
Self-citationAdvancing brain tumor therapy: unveiling the potential of PROTACs for targeted protein degradation
Ibrahim, S., Khan, M. U., Noreen, S., Firdous, S., Khurram, I., Rehman, R., Javed, M. A., & Ali, Q. (2025) · Cytotechnology · doi:10.1007/s10616-025-00716-8 · Cited by 3
Metadata
- Authors
- Yang, K., Wu, H., Zhang, Z., Leisten, E. D., Nie, X., Liu, B., Wen, Z., Zhang, J., Cunningham, M. D., & Tang, W.
- Affiliations
- University of Wisconsin–Madison (US)
- Corresponding author
- Tang, Weiping
- ORCID
- Venue
- ACS Medicinal Chemistry Letters
- Publisher
- American Chemical Society (ACS)
- Published
- 2020-03-18
- Volume
- 11
- Issue
- 4
- Pages
- 575-581
- ISSN
- 1948-5875 (ISSN-L)
- PMC
- PMC7153272
- OpenAlex
- W3011548650
- Cited by
- 124
- References
- 47
- Citations by year
- 2026: 11 · 2025: 20 · 2024: 14 · 2023: 23 · 2022: 27 · 2021: 19 · 2020: 10
- FWCI
- 6.89
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- Locations
- ACS Medicinal Chemistry Letters (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health (???R01 CA152108???)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Degradation and Inhibitors
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Histone Deacetylase Inhibitors Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Keywords
- HDAC6, PROTACs, VHL E3 ubiquitin ligase, chemical probes, MM.1S cells, aggresome formation, anticancer agents
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