Targeted protein degradation: advances in drug discovery and clinical practice
Open accessAbstract
Targeted protein degradation (TPD) represents a revolutionary therapeutic strategy in disease management, providing a stark contrast to traditional therapeutic approaches like small molecule inhibitors that primarily focus on inhibiting protein function. This advanced technology capitalizes on the cell’s intrinsic proteolytic systems, including the proteasome and lysosomal pathways, to selectively eliminate disease-causing proteins. TPD not only enhances the efficacy of treatments but also expands the scope of protein degradation applications. Despite its considerable potential, TPD faces challenges related to the properties of the drugs and their rational design. This review thoroughly explores the mechanisms and clinical advancements of TPD, from its initial conceptualization to practical implementation, with a particular focus on proteolysis-targeting chimeras and molecular glues. In addition, the review delves into emerging technologies and methodologies aimed at addressing these challenges and enhancing therapeutic efficacy. We also discuss the significant clinical trials and highlight the promising therapeutic outcomes associated with TPD drugs, illustrating their potential to transform the treatment landscape. Furthermore, the review considers the benefits of combining TPD with other therapies to enhance overall treatment effectiveness and overcome drug resistance. The future directions of TPD applications are also explored, presenting an optimistic perspective on further innovations. By offering a comprehensive overview of the current innovations and the challenges faced, this review assesses the transformative potential of TPD in revolutionizing drug development and disease management, setting the stage for a new era in medical therapy.
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PROTACs are categorized into distinct generations; first-generation employed peptide-based ligands, second-generation introduced small molecule ligands with improved drug-like properties, and within the second generation rational design enabled multiple candidates to advance into clinical development.
“First-generation PROtAcs employed peptide-based ligands, while second-generation PROtAcs introduced small molecule ligands with improved drug-like properties; it is within this generation that rational design has enabled multiple candidates to advance into clinical development (Zhong et al. 2024).”
From From serendipity to strategy: molecular glue degraders in cancer therapeutics (2025) · cites this paper as Zhong et al. 2024
Split into 3 atoms — 1 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measuredPROTACs targeting PLK1, BTK, BRAF(V600E) and NTRK have exhibited promising pre-clinical and clinical success across a range of cancers.
“PROtAcs targeting PlK1, BtK, BRAF (v600e) and NtRK have exhibited promising pre-clinical and clinical success across a range of cancers (li et al. 2020;lier et al. 2022;Zhong et al. 2024).”
From From serendipity to strategy: molecular glue degraders in cancer therapeutics (2025) · cites this paper as Zhong et al. 2024
The sections on BTK and BRAF degraders report promising preclinical activity, and the BTK section reports preliminary clinical efficacy in B-cell malignancies. The NTRK section reports effective TRKC degradation and a degrader entering trials, while the BRAF section says its trial is underway—not that either has achieved clinical success. Searches for PLK1 and polo-like kinase 1 did not locate support for that target in our copy. Page numbers were not provided. (LLM, conf=0.86)
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Cites
Sung, H., Ferlay, J., Siegel, R. L., Laversanne, M., Soerjomataram, I., Jemal, A., & Bray, F. (2021) · CA: A Cancer Journal for Clinicians · doi:10.3322/caac.21660 · Cited by 108,699 · see citing works
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764 · see citing works
Calcineurin is a common target of cyclophilin-cyclosporin A and FKBP-FK506 complexes
Liu, J., Farmer, J. D., Lane, W. S., Friedman, J., Weissman, I., & Schreiber, S. L. (1991) · Cell · doi:10.1016/0092-8674(91)90124-h · Cited by 4,116 · see citing works
Activation of vascular endothelial growth factor gene transcription by hypoxia-inducible factor 1
Forsythe, J. A., Jiang, B.-H., Iyer, N. V., Agani, F., Leung, S. W., Koos, R. D., & Semenza, G. L. (1996) · Molecular and Cellular Biology · doi:10.1128/mcb.16.9.4604 · Cited by 3,981 · see citing works
Cell cycle, CDKs and cancer: a changing paradigm
Malumbres, M., & Barbacid, M. (2009) · Nature Reviews Cancer · doi:10.1038/nrc2602 · Cited by 3,957 · see citing works
STING is an endoplasmic reticulum adaptor that facilitates innate immune signalling
Ishikawa, H., & Barber, G. N. (2008) · Nature · doi:10.1038/nature07317 · Cited by 3,576 · see citing works
The neuropathological diagnosis of Alzheimer's disease
DeTure, M. A., & Dickson, D. W. (2019) · Molecular Neurodegeneration · doi:10.1186/s13024-019-0333-5 · Cited by 3,329 · see citing works
Youle, R. J., & Narendra, D. P. (2011) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3028 · Cited by 3,273 · see citing works
Antitumor Activity of Thalidomide in Refractory Multiple Myeloma
Singhal, S., Mehta, J., Desikan, R., Ayers, D., Roberson, P., Eddlemon, P., Munshi, N., Anaissie, E., Wilson, C., Dhodapkar, M., et al. (1999) · New England Journal of Medicine · doi:10.1056/nejm199911183412102 · Cited by 2,575 · see citing works
Cross, D. A. E., Ashton, S. E., Ghiorghiu, S., Eberlein, C., Nebhan, C. A., Spitzler, P. J., Orme, J. P., Finlay, M. R. V., Ward, R. A., Mellor, M. J., et al. (2014) · Cancer Discovery · doi:10.1158/2159-8290.cd-14-0337 · Cited by 2,246 · see citing works
Tau-mediated neurodegeneration in Alzheimer’s disease and related disorders
Ballatore, C., Lee, V. M.-Y., & Trojanowski, J. Q. (2007) · Nature Reviews Neuroscience · doi:10.1038/nrn2194 · Cited by 2,174 · see citing works
The machinery of macroautophagy
Feng, Y., He, D., Yao, Z., & Klionsky, D. J. (2014) · Cell Research · doi:10.1038/cr.2013.168 · Cited by 2,083 · see citing works
A Comprehensive Survey of Ras Mutations in Cancer
Prior, I. A., Lewis, P. D., & Mattos, C. (2012) · Cancer Research · doi:10.1158/0008-5472.can-11-2612 · Cited by 2,063 · see citing works
Molecular mechanisms and cellular functions of cGAS–STING signalling
Hopfner, K.-P., & Hornung, V. (2020) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-020-0244-x · Cited by 2,052 · see citing works
Lenalidomide Causes Selective Degradation of IKZF1 and IKZF3 in Multiple Myeloma Cells
Krönke, J., Udeshi, N. D., Narla, A., Grauman, P., Hurst, S. N., McConkey, M., Svinkina, T., Heckl, D., Comer, E., Li, X., et al. (2014) · Science · doi:10.1126/science.1244851 · Cited by 1,879 · see citing works
Phthalimide conjugation as a strategy for in vivo target protein degradation
Winter, G. E., Buckley, D. L., Paulk, J., Roberts, J. M., Souza, A., Dhe-Paganon, S., & Bradner, J. E. (2015) · Science · doi:10.1126/science.aab1433 · Cited by 1,760 · see citing works
Autophagy in mammalian development and differentiation
Mizushima, N., & Levine, B. (2010) · Nature Cell Biology · doi:10.1038/ncb0910-823 · Cited by 1,555 · see citing works
Lysosomal acidification mechanisms
Mindell, J. A. (2012) · Annual Review of Physiology · doi:10.1146/annurev-physiol-012110-142317 · Cited by 1,258 · see citing works
Isolation of a Protein Target of the FKBP12-Rapamycin Complex in Mammalian Cells
Sabers, C. J., Martin, M. M., Brunn, G. J., Williams, J. M., Dumont, F. J., Wiederrecht, G., & Abraham, R. T. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.2.815 · Cited by 887 · see citing works
Structural basis for the recognition of hydroxyproline in HIF-1α by pVHL
Hon, W.-C., Wilson, M. I., Harlos, K., Claridge, T. D. W., Schofield, C. J., Pugh, C. W., Maxwell, P. H., Ratcliffe, P. J., Stuart, D. I., & Jones, E. Y. (2002) · Nature · doi:10.1038/nature00767 · Cited by 751 · see citing works
Bar-Sagi, D., & Feramisco, J. R. (1986) · Science · doi:10.1126/science.3090687 · Cited by 734 · see citing works
Role of Bruton’s tyrosine kinase in B cells and malignancies
Pal Singh, S., Dammeijer, F., & Hendriks, R. W. (2018) · Molecular Cancer · doi:10.1186/s12943-018-0779-z · Cited by 726 · see citing works
Liver X receptors in lipid signalling and membrane homeostasis
Wang, B., & Tontonoz, P. (2018) · Nature Reviews Endocrinology · doi:10.1038/s41574-018-0037-x · Cited by 722 · see citing works
A selective BCL-XL PROTAC degrader achieves safe and potent antitumor activity
Khan, S., Zhang, X., Lv, D., Zhang, Q., He, Y., Zhang, P., Liu, X., Thummuri, D., Yuan, Y., Wiegand, J. S., et al. (2019) · Nature Medicine · doi:10.1038/s41591-019-0668-z · Cited by 688 · see citing works
The deubiquitinylation and localization of PTEN are regulated by a HAUSP-PML network
Song, M. S., Salmena, L., Carracedo, A., Egia, A., Lo-Coco, F., Teruya-Feldstein, J., & Pandolfi, P. P. (2008) · Nature · doi:10.1038/nature07290 · Cited by 548 · see citing works
Atg8: an autophagy-related ubiquitin-like protein family.
Shpilka, T., Weidberg, H., Pietrokovski, S., & Elazar, Z. (2011) · Genome biology · doi:10.1186/gb-2011-12-7-226 · Cited by 543 · see citing works
Exosome‐Guided Phenotypic Switch of M1 to M2 Macrophages for Cutaneous Wound Healing
Kim, H., Wang, S. Y., Kwak, G., Yang, Y., Kwon, I. C., & Kim, S. H. (2019) · Advanced Science · doi:10.1002/advs.201900513 · Cited by 542 · see citing works
Endophilin marks and controls a clathrin-independent endocytic pathway
Boucrot, E., Ferreira, A. P. A., Almeida-Souza, L., Debard, S., Vallis, Y., Howard, G., Bertot, L., Sauvonnet, N., & McMahon, H. T. (2015) · Nature · doi:10.1038/nature14067 · Cited by 542 · see citing works
Defining the human C2H2 zinc finger degrome targeted by thalidomide analogs through CRBN
Sievers, Q. L., Petzold, G., Bunker, R. D., Renneville, A., Słabicki, M., Liddicoat, B. J., Abdulrahman, W., Mikkelsen, T., Ebert, B. L., & Thomä, N. H. (2018) · Science · doi:10.1126/science.aat0572 · Cited by 537 · see citing works
Vertical Pathway Inhibition Overcomes Adaptive Feedback Resistance to KRASG12C Inhibition
Ryan, M. B., Fece de la Cruz, F., Phat, S., Myers, D. T., Wong, E., Shahzade, H. A., Hong, C. B., & Corcoran, R. B. (2020) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-19-3523 · Cited by 496 · see citing works
An assessment by the statin muscle safety task force: 2014 update
Rosenson, R. S., Baker, S. K., Jacobson, T. A., Kopecky, S. L., & Parker, B. A. (2014) · Journal of Clinical Lipidology · doi:10.1016/j.jacl.2014.03.004 · Cited by 485 · see citing works
The CDK inhibitor CR8 acts as a molecular glue degrader that depletes cyclin K
Słabicki, M., Kozicka, Z., Petzold, G., Li, Y.-D., Manojkumar, M., Bunker, R. D., Donovan, K. A., Sievers, Q. L., Koeppel, J., Suchyta, D., et al. (2020) · Nature · doi:10.1038/s41586-020-2374-x · Cited by 433 · see citing works
Light-Induced Protein Degradation with Photocaged PROTACs
Xue, G., Wang, K., Zhou, D., Zhong, H., & Pan, Z. (2019) · Journal of the American Chemical Society · doi:10.1021/jacs.9b06422 · Cited by 377 · see citing works
Cdc42, Rac1, and Rac2 Display Distinct Patterns of Activation during Phagocytosis
Hoppe, A. D., & Swanson, J. A. (2004) · Molecular Biology of the Cell · doi:10.1091/mbc.e03-11-0847 · Cited by 365 · see citing works
Hines, J., Lartigue, S., Dong, H., Qian, Y., & Crews, C. M. (2019) · Cancer Research · doi:10.1158/0008-5472.can-18-2918 · Cited by 348 · see citing works
SALL4 mediates teratogenicity as a thalidomide-dependent cereblon substrate
Matyskiela, M. E., Couto, S., Zheng, X., Lu, G., Hui, J., Stamp, K., Drew, C., Ren, Y., Wang, M., Carpenter, A., et al. (2018) · Nature Chemical Biology · doi:10.1038/s41589-018-0129-x · Cited by 338 · see citing works
Ubiquitin-independent function of optineurin in autophagic clearance of protein aggregates
Korac, J., Schaeffer, V., Kovacevic, I., Clement, A. M., Jungblut, B., Behl, C., Terzic, J., & Dikic, I. (2013) · Journal of Cell Science · doi:10.1242/jcs.114926 · Cited by 336 · see citing works
Target gene-independent functions of MYC oncoproteins
Baluapuri, A., Wolf, E., & Eilers, M. (2020) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-020-0215-2 · Cited by 310 · see citing works
Lu, M., Liu, T., Jiao, Q., Ji, J., Tao, M., Liu, Y., You, Q., & Jiang, Z. (2018) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2018.01.063 · Cited by 310 · see citing works
Sun, Y., Zhao, X., Ding, N., Gao, H., Wu, Y., Yang, Y., Zhao, M., Hwang, J., Song, Y., Liu, W., et al. (2018) · Cell Research · doi:10.1038/s41422-018-0055-1 · Cited by 295 · see citing works
Homolog-Selective Degradation as a Strategy to Probe the Function of CDK6 in AML
Brand, M., Jiang, B., Bauer, S., Donovan, K. A., Liang, Y., Wang, E. S., Nowak, R. P., Yuan, J. C., Zhang, T., Kwiatkowski, N., et al. (2019) · Cell Chemical Biology · doi:10.1016/j.chembiol.2018.11.006 · Cited by 258 · see citing works
Sun, Y., Martin, A. C., & Drubin, D. G. (2006) · Developmental Cell · doi:10.1016/j.devcel.2006.05.008 · Cited by 255 · see citing works
TF-PROTACs Enable Targeted Degradation of Transcription Factors
Liu, J., Chen, H., Kaniskan, H. Ü., Xie, L., Chen, X., Jin, J., & Wei, W. (2021) · Journal of the American Chemical Society · doi:10.1021/jacs.1c03852 · Cited by 247 · see citing works
Maniaci, C., Hughes, S. J., Testa, A., Chen, W., Lamont, D. J., Rocha, S., Alessi, D. R., Romeo, R., & Ciulli, A. (2017) · Nature Communications · doi:10.1038/s41467-017-00954-1 · Cited by 245 · see citing works
Ohoka, N., Okuhira, K., Ito, M., Nagai, K., Shibata, N., Hattori, T., Ujikawa, O., Shimokawa, K., Sano, O., Koyama, R., et al. (2017) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.768853 · Cited by 240 · see citing works
Proteolysis Targeting Chimeras (PROTACs) of Anaplastic Lymphoma Kinase (ALK)
Zhang, C., Han, X.-R., Yang, X., Jiang, B., Liu, J., Xiong, Y., & Jin, J. (2018) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2018.03.071 · Cited by 226 · see citing works
PRosettaC: Rosetta Based Modeling of PROTAC Mediated Ternary Complexes
Zaidman, D., Prilusky, J., & London, N. (2020) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.0c00589 · Cited by 224 · see citing works
Functional TRIM24 degrader via conjugation of ineffectual bromodomain and VHL ligands
Gechijian, L. N., Buckley, D. L., Lawlor, M. A., Reyes, J. M., Paulk, J., Ott, C. J., Winter, G. E., Erb, M. A., Scott, T. G., Xu, M., et al. (2018) · Nature Chemical Biology · doi:10.1038/s41589-018-0010-y · Cited by 222 · see citing works
Antibody Conjugation of a Chimeric BET Degrader Enables <i>in vivo</i> Activity
Pillow, T. H., Adhikari, P., Blake, R. A., Chen, J., Del Rosario, G., Deshmukh, G., Figueroa, I., Gascoigne, K. E., Kamath, A. V., Kaufman, S., et al. (2020) · ChemMedChem · doi:10.1002/cmdc.201900497 · Cited by 216 · see citing works
Solution Conformations Shed Light on PROTAC Cell Permeability
Atilaw, Y., Poongavanam, V., Svensson Nilsson, C., Nguyen, D., Giese, A., Meibom, D., Erdelyi, M., & Kihlberg, J. (2021) · ACS Medicinal Chemistry Letters · doi:10.1021/acsmedchemlett.0c00556 · Cited by 208 · see citing works
Hagner, P. R., Man, H.-W., Fontanillo, C., Wang, M., Couto, S., Breider, M., Bjorklund, C., Havens, C. G., Lu, G., Rychak, E., et al. (2015) · Blood · doi:10.1182/blood-2015-02-628669 · Cited by 203 · see citing works
Chasing molecular glue degraders: screening approaches
Domostegui, A., Nieto-Barrado, L., Perez-Lopez, C., & Mayor-Ruiz, C. (2022) · Chemical Society Reviews · doi:10.1039/d2cs00197g · Cited by 200 · see citing works
DCAF11 Supports Targeted Protein Degradation by Electrophilic Proteolysis-Targeting Chimeras
Zhang, X., Luukkonen, L. M., Eissler, C. L., Crowley, V. M., Yamashita, Y., Schafroth, M. A., Kikuchi, S., Weinstein, D. S., Symons, K. T., Nordin, B. E., et al. (2021) · Journal of the American Chemical Society · doi:10.1021/jacs.1c00990 · Cited by 199 · see citing works
Burslem, G. M., Song, J., Chen, X., Hines, J., & Crews, C. M. (2018) · Journal of the American Chemical Society · doi:10.1021/jacs.8b10320 · Cited by 176 · see citing works
Kinase-impaired BTK mutations are susceptible to clinical-stage BTK and IKZF1/3 degrader NX-2127
Montoya, S., Bourcier, J., Noviski, M., Lu, H., Thompson, M. C., Chirino, A., Jahn, J., Sondhi, A. K., Gajewski, S., Tan, Y. S. (., et al. (2024) · Science · doi:10.1126/science.adi5798 · Cited by 175 · see citing works
Discovery and characterization of a selective IKZF2 glue degrader for cancer immunotherapy
Bonazzi, S., d’Hennezel, E., Beckwith, R. E. J., Xu, L., Fazal, A., Magracheva, A., Ramesh, R., Cernijenko, A., Antonakos, B., Bhang, H.-E. C., et al. (2023) · Cell Chemical Biology · doi:10.1016/j.chembiol.2023.02.005 · Cited by 167 · see citing works
Development of a BCL-xL and BCL-2 dual degrader with improved anti-leukemic activity,
Lv, D., Pal, P., Liu, X., Jia, Y., Thummuri, D., Zhang, P., Hu, W., Pei, J., Zhang, Q., Zhou, S., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-27210-x · Cited by 158 · see citing works
First targeted protein degrader hits the clinic
Mullard, A. (2019) · Nature Reviews Drug Discovery · doi:10.1038/d41573-019-00043-6 · Cited by 146 · see citing works
Snyder, L. B., Flanagan, J. J., Qian, Y., Gough, S. M., Andreoli, M., Bookbinder, M., Cadelina, G., Bradley, J., Rousseau, E., Chandler, J., et al. (2021) · Cancer Research · doi:10.1158/1538-7445.am2021-44 · Cited by 126 · see citing works
Yang, K., Wu, H., Zhang, Z., Leisten, E. D., Nie, X., Liu, B., Wen, Z., Zhang, J., Cunningham, M. D., & Tang, W. (2020) · ACS Medicinal Chemistry Letters · doi:10.1021/acsmedchemlett.0c00046 · Cited by 124 · see citing works
Spoiled for Choice: Diverse Endocytic Pathways Function at the Cell Surface
Thottacherry, J. J., Sathe, M., Prabhakara, C., & Mayor, S. (2019) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-100617-062710 · Cited by 122 · see citing works
Mayor-Ruiz, C., Jaeger, M. G., Bauer, S., Brand, M., Sin, C., Hanzl, A., Mueller, A. C., Menche, J., & Winter, G. E. (2019) · Molecular Cell · doi:10.1016/j.molcel.2019.07.013 · Cited by 119 · see citing works
Plasticity in designing PROTACs for selective and potent degradation of HDAC6
Yang, H., Lv, W., He, M., Deng, H., Li, H., Wu, W., & Rao, Y. (2019) · Chemical Communications · doi:10.1039/c9cc08509b · Cited by 108 · see citing works
IKZF2 Drives Leukemia Stem Cell Self-Renewal and Inhibits Myeloid Differentiation
Park, S.-M., Cho, H., Thornton, A. M., Barlowe, T. S., Chou, T., Chhangawala, S., Fairchild, L., Taggart, J., Chow, A., Schurer, A., et al. (2019) · Cell Stem Cell · doi:10.1016/j.stem.2018.10.016 · Cited by 97 · see citing works
Homo-PROTAC mediated suicide of MDM2 to treat non-small cell lung cancer
He, S., Ma, J., Fang, Y., Liu, Y., Wu, S., Dong, G., Wang, W., & Sheng, C. (2021) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2020.11.022 · Cited by 91 · see citing works
Zhang, X., Thummuri, D., He, Y., Liu, X., Zhang, P., Zhou, D., & Zheng, G. (2019) · Chemical Communications · doi:10.1039/c9cc07217a · Cited by 86 · see citing works
Wu, S., Jiang, Y., Hong, Y., Chu, X., Zhang, Z., Tao, Y., Fan, Z., Bai, Z., Li, X., Chen, Y., et al. (2021) · Cancer Cell International · doi:10.1186/s12935-021-01908-w · Cited by 81 · see citing works
Assessing IRAK4 Functions in ABC DLBCL by IRAK4 Kinase Inhibition and Protein Degradation
Zhang, J., Fu, L., Shen, B., Liu, Y., Wang, W., Cai, X., Kong, L., Yan, Y., Meng, R., Zhang, Z., et al. (2020) · Cell Chemical Biology · doi:10.1016/j.chembiol.2020.08.010 · Cited by 63 · see citing works
Chauvin, C., Salhi, S., & Jean-Jean, O. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.00035-07 · Cited by 58 · see citing works
Translational PK–PD for targeted protein degradation
Bartlett, D. W., & Gilbert, A. M. (2022) · Chemical Society Reviews · doi:10.1039/d2cs00114d · Cited by 55 · see citing works
Lonial, S., van de Donk, N. W. C. J., Popat, R., Zonder, J. A., Minnema, M. C., Larsen, J., Nguyen, T. V., Chen, M. S., Bensmaine, A., Cota, M., et al. (2019) · Journal of Clinical Oncology · doi:10.1200/jco.2019.37.15_suppl.8006 · Cited by 49 · see citing works
Flagged first, then by citations
Research works printed but not linked: 634
- [1]Hochhaus, A. et al. Long-term outcomes of imatinib treatment for chronic myeloid leukemia. N. Engl. J. Med. 376, 917–927 (2017). 28273028 PMC5901965 · DOI
- [2]Jiang, V. C. et al. Cotargeting of BTK and MALT1 overcomes resistance to BTK inhibitors in mantle cell lymphoma. J. Clin. Invest. 133, e165694 (2023). 36719376 PMC9888382 · DOI
- [3]Shaffer, A. L. 3rd et al. Overcoming acquired epigenetic resistance to BTK inhibitors. Blood Cancer Discov 2, 630–647 (2021). 34778802 PMC8580621 · DOI
- [4]Kadri, S. et al. Clonal evolution underlying leukemia progression and Richter transformation in patients with ibrutinib-relapsed CLL. Blood Adv. 1, 715–727 (2017). 29296715 PMC5728051 · DOI · Paper page
- [5]Santos, R. et al. A comprehensive map of molecular drug targets. Nat. Rev. Drug Discov. 16, 19–34 (2017). 27910877 PMC6314433 · DOI · Paper page
- [6]Sun, Y. et al. Degradation of Bruton’s tyrosine kinase mutants by PROTACs for potential treatment of ibrutinib-resistant non-Hodgkin lymphomas. Leukemia 33, 2105–2110 (2019). 30858551 · DOI · Paper page
- [7]Buhimschi, A. D. et al. Targeting the C481S ibrutinib-resistance mutation in Bruton’s tyrosine kinase using PROTAC-Mediated Degradation. Biochemistry 57, 3564–3575 (2018). 29851337 · DOI · Paper page
- [8]Shorer Arbel, Y. et al. Proteolysis targeting chimeras for BTK efficiently inhibit B-cell receptor signaling and can overcome ibrutinib resistance in CLL cells. Front. Oncol. 11, 646971 (2021). 34055615 PMC8159153 · DOI
- [9]Cao, S. et al. Proteolysis-targeting chimera (PROTAC) modification of dovitinib enhances the antiproliferative effect against FLT3-ITD-positive acute myeloid leukemia cells. J. Med. Chem. 64, 16497–16511 (2021). 34694800 · DOI
- [10]Zhao, Q. et al. Discovery of SIAIS178 as an effective BCR-ABL degrader by recruiting Von Hippel-Lindau (VHL) E3 ubiquitin ligase. J. Med. Chem. 62, 9281–9298 (2019). 31539241 · DOI · Paper page
- [11]Sun, N. et al. Development of a Brigatinib degrader (SIAIS117) as a potential treatment for ALK positive cancer resistance. Eur. J. Med. Chem. 193, 112190 (2020). 32179332 · DOI
- [13]Bond, M. J. et al. Targeted degradation of oncogenic KRAS(G12C) by VHL-recruiting PROTACs. ACS Cent. Sci. 6, 1367–1375 (2020). 32875077 PMC7453568 · DOI · Paper page
- [14]Samarasinghe, K. T. G. et al. OligoTRAFTACs: a generalizable method for transcription factor degradation. RSC Chem. Biol. 3, 1144–1153 (2022). 36128504 PMC9428672 · DOI
- [16]Xu, Y. et al. The aptamer-based RNA-PROTAC. Bioorg. Med. Chem. 86, 117299 (2023). 37137271 · DOI
- [17]Lai, A. C. & Crews, C. M. Induced protein degradation: an emerging drug discovery paradigm. Nat. Rev. Drug Discov. 16, 101–114 (2017). 27885283 PMC5684876 · DOI · Paper page
- [19]Liu, Z. et al. An overview of PROTACs: a promising drug discovery paradigm. Mol. biomed. 3, 46 (2022). 36536188 PMC9763089 · DOI
- [20]Schreiber, S. L. The rise of molecular glues. Cell 184, 3–9 (2021). 33417864 · DOI · Paper page
- [21]Wells, J. A. & Kumru, K. Extracellular targeted protein degradation: an emerging modality for drug discovery. Nat. Rev. Drug Discov. 23, 126–140 (2024). 38062152 · DOI
- [22]Paudel, R. R. et al. Targeted protein degradation via lysosomes. Biochemistry 62, 564–579 (2023). 36130224 PMC10245383 · DOI
- [23]Eldridge, A. G. & O’Brien, T. Therapeutic strategies within the ubiquitin proteasome system. Cell Death Differ 17, 4–13 (2010). 19557013 · DOI
- [24]Kimura, Y. & Tanaka, K. Regulatory mechanisms involved in the control of ubiquitin homeostasis. J. Biochem. 147, 793–798 (2010). 20418328 · DOI
- [25]Cecchini, C., Pannilunghi, S., Tardy, S. & Scapozza, L. From conception to development: investigating PROTACs features for improved cell permeability and successful protein degradation. Front Chem 9, 672267 (2021). 33959589 PMC8093871 · DOI
- [26]Sakamoto, K. M. et al. Protacs: chimeric molecules that target proteins to the Skp1-Cullin-F box complex for ubiquitination and degradation. Proc. Natl Acad. Sci. USA 98, 8554–8559 (2001). 11438690 PMC37474 · DOI · Paper page
- [27]Edmondson, S. D., Yang, B. & Fallan, C. Proteolysis targeting chimeras (PROTACs) in ‘beyond rule-of-five’ chemical space: Recent progress and future challenges. Bioorg. Med. Chem. Lett. 29, 1555–1564 (2019). 31047748 · DOI · Paper page
- [28]Bondeson, D. P. et al. Catalytic in vivo protein knockdown by small-molecule PROTACs. Nat. Chem. Biol. 11, 611–617 (2015). 26075522 PMC4629852 · DOI · Paper page
- [29]Schneekloth, A. R., Pucheault, M., Tae, H. S. & Crews, C. M. Targeted intracellular protein degradation induced by a small molecule: En route to chemical proteomics. Bioorg. Med. Chem. Lett. 18, 5904–5908 (2008). 18752944 PMC3175619 · DOI · Paper page
- [30]Li, J. et al. A platform for the rapid synthesis of molecular glues (Rapid-Glue) under miniaturized conditions for direct biological screening. Eur. J. Med. Chem. 258, 115567 (2023). 37390512 PMC10529953 · DOI
- [31]Dewey, J. A. et al. Molecular glue discovery: current and future approaches. J. Med. Chem. 66, 9278–9296 (2023). 37437222 PMC10805529 · DOI
- [33]Holdgate, G. A. et al. Screening for molecular glues—challenges and opportunities. SLAS Discov. 29, 100136 (2024). 38104659 · DOI
- [34]Wertz, I. E. & Wang, X. From discovery to bedside: targeting the ubiquitin system. Cell Chem. Biol. 26, 156–177 (2019). 30554913 · DOI
- [35]Mi, D. et al. Current advances of small molecule E3 ligands for proteolysis-targeting chimeras design. Eur. J. Med. Chem. 256, 115444 (2023). 37178483 · DOI
- [36]Harris, S. L. & Levine, A. J. The p53 pathway: positive and negative feedback loops. Oncogene 24, 2899–2908 (2005). 15838523 · DOI · Paper page
- [37]Han, X., Wei, W. & Sun, Y. PROTAC degraders with ligands recruiting MDM2 E3 ubiquitin ligase: an updated perspective. Acta Mater. Med. 1, 244–259 (2022). 35734447 PMC9211018
- [38]Tisato, V. et al. MDM2/X inhibitors under clinical evaluation: perspectives for the management of hematological malignancies and pediatric cancer. J. Hematol. Oncol. 10, 133 (2017). 28673313 PMC5496368 · DOI
- [39]Konopleva, M. et al. MDM2 inhibition: an important step forward in cancer therapy. Leukemia 34, 2858–2874 (2020). 32651541 · DOI
- [40]Zhao, Q., Lan, T., Su, S. & Rao, Y. Induction of apoptosis in MDA-MB-231 breast cancer cells by a PARP1-targeting PROTAC small molecule. Chem. Commun. 55, 369–372 (2019). 30540295 · DOI
- [43]Chutake, Y. et al. KT-253, a highly potent and selective heterobifunctional MDM2 degrader for the treatment of wildtype p53 tumors with superior potency and differentiated biological activity compared to small molecule inhibitors (SMI). Cancer Res. 82, 3934 (2022). · DOI
- [44]Deveraux, Q. L. & Reed, J. C. IAP family proteins–suppressors of apoptosis. Genes Dev 13, 239–252 (1999). 9990849 · DOI
- [45]Tamm, I. et al. Expression and prognostic significance of IAP-family genes in human cancers and myeloid leukemias. Clin. Cancer Res. 6, 1796–1803 (2000). 10815900
- [46]Cong, H. et al. Inhibitor of apoptosis protein (IAP) antagonists in anticancer agent discovery: current status and perspectives. J. Med. Chem. 62, 5750–5772 (2019). 30676015 · DOI
- [47]Wang, C. et al. Recent advances in IAP-based PROTACs (SNIPERs) as potential therapeutic agents. J. Enzym. Inhib. Med. Chem. 37, 1437–1453 (2022). PMC9122363 35589670 · DOI
- [48]Itoh, Y., Ishikawa, M., Naito, M. & Hashimoto, Y. Protein knockdown using methyl bestatin-ligand hybrid molecules: design and synthesis of inducers of ubiquitination-mediated degradation of cellular retinoic acid-binding proteins. J. Am. Chem. Soc. 132, 5820–5826 (2010). 20369832 · DOI · Paper page
- [49]Itoh, Y. et al. Development of target protein-selective degradation inducer for protein knockdown. Bioorg. Med. Chem. 19, 3229–3241 (2011). 21515062 · DOI
- [50]Itoh, Y. et al. Double protein knockdown of cIAP1 and CRABP-II using a hybrid molecule consisting of ATRA and IAPs antagonist. Bioorg. Med. Chem. Lett. 22, 4453–4457 (2012). 22658364 · DOI
- [52]Maxwell, P. H. et al. The tumour suppressor protein VHL targets hypoxia-inducible factors for oxygen-dependent proteolysis. Nature 399, 271–275 (1999). 10353251 · DOI · Paper page
- [53]Semenza, G. L. & Wang, G. L. A nuclear factor induced by hypoxia via de novo protein synthesis binds to the human erythropoietin gene enhancer at a site required for transcriptional activation. Mol. Cell. Biol. 12, 5447–5454 (1992). 1448077 PMC360482
- [55]Semenza, G. L. Molecular mechanisms mediating metastasis of hypoxic breast cancer cells. Trends Mol. Med. 18, 534–543 (2012). 22921864 PMC3449282 · DOI
- [56]Buckley, D. L. et al. Targeting the von Hippel-Lindau E3 ubiquitin ligase using small molecules to disrupt the VHL/HIF-1alpha interaction. J. Am. Chem. Soc. 134, 4465–4468 (2012). 22369643 PMC3448299 · DOI · Paper page
- [58]Min, J. H. et al. Structure of an HIF-1alpha -pVHL complex: hydroxyproline recognition in signaling. Science 296, 1886–1889 (2002). 12004076 · DOI · Paper page
- [59]Buckley, D. L. et al. Small-molecule inhibitors of the interaction between the E3 ligase VHL and HIF1alpha. Angew. Chem. Int. Ed. Engl. 51, 11463–11467 (2012). 23065727 PMC3519281 · DOI · Paper page
- [60]Galdeano, C. et al. Structure-guided design and optimization of small molecules targeting the protein-protein interaction between the von Hippel-Lindau (VHL) E3 ubiquitin ligase and the hypoxia inducible factor (HIF) alpha subunit with in vitro nanomolar affinities. J. Med. Chem. 57, 8657–8663 (2014). 25166285 PMC4207132 · DOI
- [61]Soares, P. et al. Group-based optimization of potent and cell-active inhibitors of the von Hippel-Lindau (VHL) E3 ubiquitin ligase: structure-activity relationships leading to the chemical probe (2S,4R)-1-((S)-2-(1-Cyanocyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (VH298). J. Med. Chem. 61, 599–618 (2018). 28853884 PMC5788404 · DOI
- [62]Bray, P. F. et al. The complex transcriptional landscape of the anucleate human platelet. BMC Genomics 14, 1 (2013). 23323973 PMC3722126 · DOI · Paper page
- [63]Ito, T. et al. Identification of a primary target of thalidomide teratogenicity. Science 327, 1345–1350 (2010). 20223979 · DOI · Paper page
- [66]Lu, G. et al. The myeloma drug lenalidomide promotes the cereblon-dependent destruction of Ikaros proteins. Science 343, 305–309 (2014). 24292623 PMC4070318 · DOI · Paper page
- [68]Fischer, E. S. et al. Structure of the DDB1-CRBN E3 ubiquitin ligase in complex with thalidomide. Nature 512, 49–53 (2014). 25043012 PMC4423819 · DOI · Paper page
- [69]Chamberlain, P. P. et al. Structure of the human Cereblon-DDB1-lenalidomide complex reveals basis for responsiveness to thalidomide analogs. Nat. Struct. Mol. Biol. 21, 803–809 (2014). 25108355 · DOI · Paper page
- [70]Kim, S. A. et al. A novel cereblon modulator for targeted protein degradation. Eur. J. Med. Chem. 166, 65–74 (2019). 30684871 · DOI · Paper page
- [71]Takwale, A. D. et al. Design and characterization of cereblon-mediated androgen receptor proteolysis-targeting chimeras. Eur. J. Med. Chem. 208, 112769 (2020). 32961381 · DOI
- [72]Lepper, E. R. et al. Thalidomide metabolism and hydrolysis: mechanisms and implications. Curr. Drug Metab. 7, 677–685 (2006). 16918319 · DOI
- [73]Min, J. et al. Phenyl-glutarimides: alternative cereblon binders for the design of PROTACs. Angew. Chem. Int. Ed. Engl 60, 26663–26670 (2021). 34614283 PMC8648984 · DOI
- [74]Jarusiewicz, J. A. et al. Phenyl dihydrouracil: an alternative cereblon binder for PROTAC design. ACS Med. Chem. Lett. 14, 141–145 (2023). 36793425 PMC9923830 · DOI
- [75]Gadd, M. S. et al. Structural basis of PROTAC cooperative recognition for selective protein degradation. Nat. Chem. Biol. 13, 514–521 (2017). 28288108 PMC5392356 · DOI · Paper page
- [76]Smith, B. E. et al. Differential PROTAC substrate specificity dictated by orientation of recruited E3 ligase. Nat. Commun. 10, 131 (2019). 30631068 PMC6328587 · DOI · Paper page
- [77]Luo, X. et al. Profiling of diverse tumor types establishes the broad utility of VHL-based ProTaCs and triages candidate ubiquitin ligases. iScience 25, 103985 (2022). 35295813 PMC8919295 · DOI
- [78]Guenette, R. G. et al. Target and tissue selectivity of PROTAC degraders. Chem. Soc. Rev. 51, 5740–5756 (2022). 35587208 · DOI · Paper page
- [79]Zhang, L., Riley-Gillis, B., Vijay, P. & Shen, Y. Acquired resistance to BET-PROTACs (proteolysis-targeting chimeras) caused by genomic alterations in core components of E3 ligase complexes. Mol. Cancer Ther. 18, 1302–1311 (2019). 31064868 · DOI · Paper page
- [80]Ohoka, N. et al. Development of small molecule chimeras that recruit AhR E3 ligase to target proteins. ACS Chem. Biol. 14, 2822–2832 (2019). 31580635 · DOI
- [81]Henning, N. J. et al. Discovery of a covalent FEM1B recruiter for targeted protein degradation applications. J. Am. Chem. Soc. 144, 701–708 (2022). 34994556 PMC8928484 · DOI · Paper page
- [82]Pei, J. et al. Piperlongumine conjugates induce targeted protein degradation. Cell Chem. Biol. 30, 203–213.e217 (2023). 36750097 PMC10074544 · DOI
- [83]Du, G. et al. Exploring the target scope of KEAP1 E3 ligase-based PROTACs. Cell Chem. Biol. 29, 1470–1481.e1431 (2022). 36070758 PMC9588736 · DOI
- [84]Wei, J. et al. Harnessing the E3 ligase KEAP1 for targeted protein degradation. J. Am. Chem. Soc. 143, 15073–15083 (2021). 34520194 PMC8480205 · DOI · Paper page
- [86]Tong, B. et al. Bardoxolone conjugation enables targeted protein degradation of BRD4. Sci. Rep. 10, 15543 (2020). 32968148 PMC7511954 · DOI
- [87]Ward, C. C. et al. Covalent ligand screening uncovers a RNF4 E3 ligase recruiter for targeted protein degradation applications. ACS Chem. Biol. 14, 2430–2440 (2019). 31059647 PMC7422721 · DOI · Paper page
- [88]Spradlin, J. N. et al. Harnessing the anti-cancer natural product nimbolide for targeted protein degradation. Nat. Chem. Biol. 15, 747–755 (2019). 31209351 PMC6592714 · DOI · Paper page
- [89]Luo, M. et al. Chemoproteomics-enabled discovery of covalent RNF114-based degraders that mimic natural product function. Cell Chem. Biol. 28, 559–566.e515 (2021). 33513350 PMC8052289 · DOI · Paper page
- [90]Tong, B. et al. A nimbolide-based kinase degrader preferentially degrades oncogenic BCR-ABL. ACS Chem. Biol. 15, 1788–1794 (2020). 32568522 PMC7891886 · DOI · Paper page
- [91]Nalawansha, D. A., Li, K., Hines, J. & Crews, C. M. Hijacking methyl reader proteins for nuclear-specific protein degradation. J. Am. Chem. Soc. 144, 5594–5605 (2022). 35311258 PMC10331457 · DOI
- [92]Tao, Y. et al. Targeted protein degradation by electrophilic PROTACs that stereoselectively and site-specifically engage DCAF1. J. Am. Chem. Soc. 144, 18688–18699 (2022). 36170674 PMC10347610 · DOI
- [94]Zoppi, V. et al. Iterative design and optimization of initially inactive proteolysis targeting chimeras (PROTACs) identify VZ185 as a potent, fast, and selective von Hippel-Lindau (VHL) based dual degrader probe of BRD9 and BRD7. J. Med. Chem. 62, 699–726 (2019). 30540463 PMC6348446 · DOI · Paper page
- [95]Li, L. et al. In vivo target protein degradation induced by PROTACs based on E3 ligase DCAF15. Signal Transduct. Target Ther 5, 129 (2020). 32713946 PMC7383041 · DOI
- [96]Pu, C. et al. Selective degradation of PARP2 by PROTACs via recruiting DCAF16 for triple-negative breast cancer. Eur. J. Med. Chem. 236, 114321 (2022). 35430559 · DOI
- [97]Zhang, X. et al. Electrophilic PROTACs that degrade nuclear proteins by engaging DCAF16. Nat. Chem. Biol. 15, 737–746 (2019). 31209349 PMC6592777 · DOI · Paper page
- [98]Farrell, B. M., Gerth, F., Yang, C. R. & Yeh, J. T. A synthetic KLHL20 ligand to validate CUL3(KLHL20) as a potent E3 ligase for targeted protein degradation. Genes Dev 36, 1031–1042 (2022). 36328355 PMC9732910
- [99]Cyrus, K. et al. Jostling for position: optimizing linker location in the design of estrogen receptor-targeting PROTACs. ChemMedChem 5, 979–985 (2010). 20512796 PMC3516907 · DOI
- [101]Cyrus, K. et al. Impact of linker length on the activity of PROTACs. Mol. Biosyst. 7, 359–364 (2011). 20922213 PMC3835402 · DOI · Paper page
- [102]Donoghue, C. et al. Optimal linker length for small molecule PROTACs that selectively target p38alpha and p38beta for degradation. Eur. J. Med. Chem. 201, 112451 (2020). 32634680 · DOI
- [103]Tokarski, R. J. 2nd et al. Bifunctional degraders of cyclin dependent kinase 9 (CDK9): Probing the relationship between linker length, properties, and selective protein degradation. Eur. J. Med. Chem. 254, 115342 (2023). 37071962 · DOI
- [105]David, L., Wenlock, M., Barton, P. & Ritzen, A. Prediction of chameleonic efficiency. ChemMedChem 16, 2669–2685 (2021). 34240561 · DOI
- [106]Poongavanam, V. et al. Linker-dependent folding rationalizes PROTAC cell permeability. J. Med. Chem. 65, 13029–13040 (2022). 36170570 PMC9574858 · DOI
- [107]Han, X. et al. Discovery of ARD-69 as a highly potent proteolysis targeting chimera (PROTAC) degrader of androgen receptor (AR) for the treatment of prostate cancer. J. Med. Chem. 62, 941–964 (2019). 30629437 · DOI
- [108]Testa, A. et al. Structure-based design of a macrocyclic PROTAC. Angew. Chem. Int. Ed. Engl. 59, 1727–1734 (2020). 31746102 PMC7004083 · DOI
- [109]Brown, E. J. et al. A mammalian protein targeted by G1-arresting rapamycin-receptor complex. Nature 369, 756–758 (1994). 8008069 · DOI · Paper page
- [110]Sabatini, D. M. et al. RAFT1: a mammalian protein that binds to FKBP12 in a rapamycin-dependent fashion and is homologous to yeast TORs. Cell 78, 35–43 (1994). 7518356 · DOI · Paper page
- [113]Gandhi, A. K. et al. Immunomodulatory agents lenalidomide and pomalidomide co-stimulate T cells by inducing degradation of T cell repressors Ikaros and Aiolos via modulation of the E3 ubiquitin ligase complex CRL4(CRBN.). Br. J. Haematol. 164, 811–821 (2014). 24328678 PMC4232904 · DOI · Paper page
- [114]Krönke, J. et al. Lenalidomide induces ubiquitination and degradation of CK1α in del(5q) MDS. Nature 523, 183–188 (2015). 26131937 PMC4853910 · DOI · Paper page
- [115]Kortum, K. M. et al. Cereblon binding molecules in multiple myeloma. Blood Rev 29, 329–334 (2015). 25843596 · DOI
- [116]Schreiber, S. L. Immunophilin-sensitive protein phosphatase action in cell signaling pathways. Cell 70, 365–368 (1992). 1379518 · DOI
- [117]Stan, R. et al. Interaction between FKBP12-rapamycin and TOR involves a conserved serine residue. J. Biol. Chem. 269, 32027–32030 (1994). 7528205 · DOI
- [118]Chiu, M. I., Katz, H. & Berlin, V. RAPT1, a mammalian homolog of yeast Tor, interacts with the FKBP12/rapamycin complex. Proc. Natl Acad. Sci. USA 91, 12574–12578 (1994). 7809080 PMC45481 · DOI · Paper page
- [119]Lorenz, M. C. & Heitman, J. TOR mutations confer rapamycin resistance by preventing interaction with FKBP12-rapamycin. J. Biol. Chem. 270, 27531–27537 (1995). 7499212 · DOI
- [120]Heitman, J., Movva, N. R. & Hall, M. N. Targets for cell cycle arrest by the immunosuppressant rapamycin in yeast. Science 253, 905–909 (1991). 1715094 · DOI
- [121]Shannon, E. J., Miranda, R. O., Morales, M. J. & Hastings, R. C. Inhibition of de novo IgM antibody synthesis by thalidomide as a relevant mechanism of action in leprosy. Scand. J. Immunol. 13, 553–562 (1981). 7031850 · DOI
- [122]Dredge, K. et al. Protective antitumor immunity induced by a costimulatory thalidomide analog in conjunction with whole tumor cell vaccination is mediated by increased Th1-type immunity. J. Immunol. 168, 4914–4919 (2002). 11994441 · DOI
- [123]Gupta, D. et al. Adherence of multiple myeloma cells to bone marrow stromal cells upregulates vascular endothelial growth factor secretion: therapeutic applications. Leukemia 15, 1950–1961 (2001). 11753617 · DOI
- [124]Dredge, K. et al. Novel thalidomide analogues display anti-angiogenic activity independently of immunomodulatory effects. Br. J. Cancer 87, 1166–1172 (2002). 12402158 PMC2376196 · DOI
- [126]Rajkumar, S. V. et al. Combination therapy with lenalidomide plus dexamethasone (Rev/Dex) for newly diagnosed myeloma. Blood 106, 4050–4053 (2005). 16118317 PMC1895238 · DOI · Paper page
- [127]Raza, A. et al. Thalidomide produces transfusion independence in long-standing refractory anemias of patients with myelodysplastic syndromes. Blood 98, 958–965 (2001). 11493439 · DOI
- [128]Chanan-Khan, A. et al. Clinical efficacy of lenalidomide in patients with relapsed or refractory chronic lymphocytic leukemia: results of a phase II study. J. Clin. Oncol. 24, 5343–5349 (2006). 17088571 · DOI
- [129]Zucca, E. et al. Short regimen of rituximab plus lenalidomide in follicular lymphoma patients in need of first-line therapy. Blood 134, 353–362 (2019). 31101627 · DOI
- [130]Han, T. et al. Anticancer sulfonamides target splicing by inducing RBM39 degradation via recruitment to DCAF15. Science 356, eaal3755 (2017). 28302793 · DOI · Paper page
- [131]Bewersdorf, J. P. et al. E7820, an anti-cancer sulfonamide, degrades RBM39 in patients with splicing factor mutant myeloid malignancies: a phase II clinical trial. Leukemia 37, 2512–2516 (2023). 37814121 PMC10681888 · DOI · Paper page
- [132]Slabicki, M. et al. Small-molecule-induced polymerization triggers degradation of BCL6. Nature. 588, 164–168 (2020). 33208943 PMC7816212 · DOI · Paper page
- [134]Isobe, Y. et al. Manumycin polyketides act as molecular glues between UBR7 and P53. Nat. Chem. Biol. 16, 1189–1198 (2020). 32572277 PMC7572527 · DOI · Paper page
- [135]Settembre, C. & Ballabio, A. Lysosome: regulator of lipid degradation pathways. Trends Cell Biol 24, 743–750 (2014). 25061009 PMC4247383 · DOI
- [136]Banik, S. M. et al. Lysosome-targeting chimaeras for degradation of extracellular proteins. Nature 584, 291–297 (2020). 32728216 PMC7727926 · DOI · Paper page
- [137]Zhao, L. et al. Targeted protein degradation: mechanisms, strategies and application. Signal Transduct. Target. Ther. 7, 113 (2022). 35379777 PMC8977435 · DOI
- [138]Pei, J. et al. Targeting lysosomal degradation pathways: new strategies and techniques for drug discovery. J. Med. Chem. 64, 3493–3507 (2021). 33764774 · DOI · Paper page
- [139]Bonam, S. R., Wang, F. & Muller, S. Lysosomes as a therapeutic target. Nat. Rev. Drug Discov. 18, 923–948 (2019). 31477883 PMC7097195 · DOI
- [140]Kolter, T. & Sandhoff, K. Recent advances in the biochemistry of sphingolipidoses. Brain Pathol 8, 79–100 (1998). 9458169 PMC8098506 · DOI
- [142]Forgac, M. Structure and properties of the vacuolar (H+)-ATPases. J. Biol. Chem. 274, 12951–12954 (1999). 10224039 · DOI
- [143]Nishi, T. & Forgac, M. The vacuolar (H+)-ATPases—nature’s most versatile proton pumps. Nat. Rev. Mol. Cell Biol. 3, 94–103 (2002). 11836511 · DOI · Paper page
- [144]Ciechanover, A. Intracellular protein degradation: from a vague idea thru the lysosome and the ubiquitin–proteasome system and onto human diseases and drug targeting. Cell Death Differ 12, 1178–1190 (2005). 16094394 · DOI
- [145]Dikic, I. Proteasomal and autophagic degradation systems. Annu. Rev. Biochem. 86, 193–224 (2017). 28460188 · DOI
- [146]Wolf, D. H. Ubiquitin-proteasome system: from lysosome to proteasome: the power of yeast in the dissection of proteinase function in cellular regulation and waste disposal. Cell. Mol. Life Sci. 61, 1601–1614 (2004). 15224185 PMC11138718 · DOI
- [147]Eskelinen, E.-L. & Saftig, P. Autophagy: a lysosomal degradation pathway with a central role in health and disease. BBA 1793, 664–673 (2009). 18706940
- [148]Yim, W. W.-Y. & Mizushima, N. Lysosome biology in autophagy. Cell Discov 6, 6 (2020). 32047650 PMC7010707 · DOI
- [150]Akwa, Y. et al. Stimulation of synaptic activity promotes TFEB-mediated clearance of pathological MAPT/Tau in cellular and mouse models of tauopathies. Autophagy 19, 660–677 (2023). 35867714 PMC9851246 · DOI
- [151]Tang, T. et al. Aloperine targets lysosomes to inhibit late autophagy and induces cell death through apoptosis and paraptosis in glioblastoma. Mol. Biomed. 4, 42 (2023). 37975957 PMC10656413 · DOI
- [153]Mehrpour, M., Esclatine, A., Beau, I. & Codogno, P. Overview of macroautophagy regulation in mammalian cells. Cell Res 20, 748–762 (2010). 20548331 · DOI
- [154]Klionsky, D. J. & Schulman, B. A. Dynamic regulation of macroautophagy by distinctive ubiquitin-like proteins. Nat. Struct. Mol. Biol. 21, 336–345 (2014). 24699082 PMC4036234 · DOI
- [155]Klionsky, D. J. & Codogno, P. The mechanism and physiological function of macroautophagy. J. Innate Immun. 5, 427–433 (2013). 23774579 PMC6741458 · DOI · Paper page
- [156]Tanida, I. Autophagosome formation and molecular mechanism of autophagy. Antioxid. redox Signal. 14, 2201–2214 (2011). 20712405 · DOI
- [157]Nakatogawa, H., Suzuki, K., Kamada, Y. & Ohsumi, Y. Dynamics and diversity in autophagy mechanisms: lessons from yeast. Nat. Rev. Mol. Cell Biol. 10, 458–467 (2009). 19491929 · DOI
- [158]Mizushima, N., Yoshimori, T. & Ohsumi, Y. The role of Atg proteins in autophagosome formation. Annu. Rev. Cell Dev. Biol. 27, 107–132 (2011). 21801009 · DOI · Paper page
- [159]Lamark, T. & Johansen, T. Mechanisms of selective autophagy. Annu. Rev. Cell Dev. Biol. 37, 143–169 (2021). 34152791 · DOI · Paper page
- [160]Cheong, H., Nair, U., Geng, J. & Klionsky, D. J. The Atg1 kinase complex is involved in the regulation of protein recruitment to initiate sequestering vesicle formation for nonspecific autophagy in Saccharomyces cerevisiae. Mol. Biol. Cell. 19, 668–681 (2008). 18077553 PMC2230592 · DOI
- [161]Nishimura, T. et al. Autophagosome formation is initiated at phosphatidylinositol synthase‐enriched ER subdomains. EMBO J 36, 1719–1735 (2017). 28495679 PMC5470044 · DOI
- [162]Judith, D. et al. ATG9A shapes the forming autophagosome through Arfaptin 2 and phosphatidylinositol 4-kinase IIIβ. J. Cell Biol. 218, 1634–1652 (2019). 30917996 PMC6504893 · DOI
- [163]Nishimura, T. & Tooze, S. A. Emerging roles of ATG proteins and membrane lipids in autophagosome formation. Cell Discov 6, 32 (2020). 32509328 PMC7248066 · DOI
- [164]Zheng, J.-X. et al. Architecture of the ATG2B-WDR45 complex and an aromatic Y/HF motif crucial for complex formation. Autophagy 13, 1870–1883 (2017). 28820312 PMC5788475 · DOI
- [165]Gubas, A. & Dikic, I. A guide to the regulation of selective autophagy receptors. FEBS J 289, 75–89 (2022). 33730405 · DOI
- [166]Alemu, E. A. et al. ATG8 family proteins act as scaffolds for assembly of the ULK complex: sequence requirements for LC3-interacting region (LIR) motifs. J. Biol. Chem. 287, 39275–39290 (2012). 23043107 PMC3501051 · DOI
- [167]Wurzer, B. et al. Oligomerization of p62 allows for selection of ubiquitinated cargo and isolation membrane during selective autophagy. Elife 4, e08941 (2015). 26413874 PMC4684078 · DOI
- [169]Lamark, T. & Johansen, T. Aggrephagy: selective disposal of protein aggregates by macroautophagy. Int. J. Cell Biol 2012, 736905 (2012). 22518139 PMC3320095 · DOI
- [172]Heo, J.-M. & Rutter, J. Ubiquitin-dependent mitochondrial protein degradation. Int. J. Biochem. Cell Biol. 43, 1422–1426 (2011). 21683801 PMC3163752 · DOI
- [173]Padman, B. S. et al. LC3/GABARAPs drive ubiquitin-independent recruitment of Optineurin and NDP52 to amplify mitophagy. Nat. Commun. 10, 408 (2019). 30679426 PMC6345886 · DOI
- [174]Koerver, L. et al. The ubiquitin‐conjugating enzyme UBE 2 QL 1 coordinates lysophagy in response to endolysosomal damage. EMBO Rep 20, e48014 (2019). 31432621 PMC6776906 · DOI
- [175]Dunn, J. & William, A. et al. Pexophagy: the selective autophagy of peroxisomes. Autophagy 1, 75–83 (2005). 16874024 · DOI
- [176]Sakai, Y., Oku, M., van der Klei, I. J. & Kiel, J. A. Pexophagy: autophagic degradation of peroxisomes. Biochim. Biophys. Acta Gene Regul. Mech. 1763, 1767–1775 (2006). 17005271
- [177]Bauckman, K. A., Owusu-Boaitey, N. & Mysorekar, I. U. Selective autophagy: xenophagy. Methods 75, 120–127 (2015). 25497060 PMC4355331 · DOI
- [178]Wild, P. et al. Phosphorylation of the autophagy receptor optineurin restricts Salmonella growth. Science 333, 228–233 (2011). 21617041 PMC3714538 · DOI · Paper page
- [179]Hübner, C. A. & Dikic, I. ER-phagy and human diseases. Cell Death Differ 27, 833–842 (2020). 31659280 PMC7206075 · DOI
- [180]Hill, M. A., Sykes, A. M. & Mellick, G. D. ER-phagy in neurodegeneration. J. Neurosci. Res. 101, 1611–1623 (2023). 37334842 · DOI
- [181]Bernales, S., Schuck, S. & Walter, P. ER-phagy: selective autophagy of the endoplasmic reticulum. Autophagy 3, 285–287 (2007). 17351330 · DOI
- [182]An, H. et al. TEX264 is an endoplasmic reticulum-resident ATG8-interacting protein critical for ER remodeling during nutrient stress. Mol. Cell. 74, 891–908.e810 (2019). 31006537 PMC6747008 · DOI
- [183]Dice, J. F. Chaperone-mediated autophagy. Autophagy 3, 295–299 (2007). 17404494 · DOI
- [184]Eskelinen, E. L. et al. Unifying nomenclature for the isoforms of the lysosomal membrane protein LAMP-2. Traffic 6, 1058–1061 (2005). 16190986 · DOI
- [185]Cai, Z. et al. Chaperone-mediated autophagy: roles in neuroprotection. Neurosci. Bull. 31, 452–458 (2015). 26206599 PMC5563711 · DOI
- [186]Bejarano, E. & Cuervo, A. M. Chaperone-mediated autophagy. Proc. Am. Thorac. Soc. 7, 29–39 (2010). 20160146 PMC3137147 · DOI
- [187]Quintavalle, C. et al. Phosphorylation-regulated degradation of the tumor-suppressor form of PED by chaperone-mediated autophagy in lung cancer cells. J. Cell. Physiol. 229, 1359–1368 (2014). 24477641 PMC4310550 · DOI
- [188]Dice, J. F. Peptide sequences that target cytosolic proteins for lysosomal proteolysis. Trends Biochem. Sci. 15, 305–309 (1990). 2204156 · DOI
- [189]Baindur-Hudson, S., Edkins, A. L. & Blatch, G. L. Hsp70/Hsp90 organising protein (hop): beyond interactions with chaperones and prion proteins. Subcell. Biochem. 78, 69–90 (2015). 25487016 · DOI
- [190]Briknarová, K. et al. Structural analysis of BAG1 cochaperone and its interactions with Hsc70 heat shock protein. Nat. Struct. Biol. 8, 349–352 (2001). 11276257 · DOI
- [191]Cuervo, A. M. & Dice, J. F. A receptor for the selective uptake and degradation of proteins by lysosomes. Science 273, 501–503 (1996). 8662539 · DOI · Paper page
- [192]Cuervo, A. & Dice, J. Unique properties of lamp2a compared to other lamp2 isoforms. J. Cell Sci. 113, 4441–4450 (2000). 11082038 · DOI
- [193]Bandyopadhyay, U., Kaushik, S., Varticovski, L. & Cuervo, A. M. The chaperone-mediated autophagy receptor organizes in dynamic protein complexes at the lysosomal membrane. Mol. Cell. Biol. 28, 5747–5763 (2008). 18644871 PMC2546938 · DOI
- [194]Fernández-Fernández, M. R. et al. Hsp70—a master regulator in protein degradation. FEBS Lett 591, 2648–2660 (2017). 28696498 · DOI
- [195]Yuan, Z., Wang, S., Tan, X. & Wang, D. New insights into the mechanisms of chaperon-mediated autophagy and implications for kidney diseases. Cells 11, 406 (2022). 35159216 PMC8834181 · DOI
- [196]Koga, H. & Cuervo, A. M. Chaperone-mediated autophagy dysfunction in the pathogenesis of neurodegeneration. Neurobiol. Dis. 43, 29–37 (2011). 20643207 PMC2998583 · DOI
- [197]Banushi, B. et al. Endocytosis in cancer and cancer therapy. Nat. Rev. Cancer 23, 450–473 (2023). 37217781 · DOI
- [198]Miaczynska, M. & Stenmark, H. Mechanisms and functions of endocytosis. J. Cell Biol. 180, 7 (2008). 18195098 PMC2213624 · DOI
- [199]Di Fiore, P. P. & von Zastrow, M. Endocytosis, signaling, and beyond. Cold Spring Harb. Perspect. Biol. 6, a016865 (2014). 25085911 PMC4107983 · DOI
- [200]Allen, L.-A. H. & Aderem, A. Mechanisms of phagocytosis. Curr. Opin. Immunol. 8, 36–40 (1996). 8729444 · DOI
- [201]Strømhaug, P. E., Berg, T. O., Gjøen, T. & Seglen, P. O. Differences between fluid-phase endocytosis (pinocytosis) and receptor-mediated endocytosis in isolated rat hepatocytes. Eur. J. Cell Biol. 73, 28–39 (1997). 9174669
- [202]Smythe, E. & Warren, G. The mechanism of receptor-mediated endocytosis. EJB Rev. 202, 265–275 (1991). 1662613
- [203]Pelkmans, L. & Helenius, A. Endocytosis via caveolae. Traffic 3, 311–320 (2002). 11967125 · DOI
- [204]Renard, H.-F. & Boucrot, E. Unconventional endocytic mechanisms. Curr. Opin. Cell Biol. 71, 120–129 (2021). 33862329 · DOI
- [205]Ferreira, A. P. & Boucrot, E. Mechanisms of carrier formation during clathrin-independent endocytosis. Trends Cell Biol. 28, 188–200 (2018). 29241687 · DOI
- [206]Pacheco, P., White, D. & Sulchek, T. Effects of microparticle size and Fc density on macrophage phagocytosis. PLoS ONE 8, e60989 (2013). 23630577 PMC3632606 · DOI
- [208]Gold, E. S. et al. Dynamin 2 is required for phagocytosis in macrophages. J. Exp. Med. 190, 1849–1856 (1999). 10601359 PMC2195719 · DOI
- [209]Garcia-Garcia, E. & Rosales, C. Signal transduction during Fc receptor-mediated phagocytosis. J. Leukoc. Biol. 72, 1092–1108 (2002). 12488490 · DOI
- [210]Frank, M. M. & Fries, L. F. The role of complement in inflammation and phagocytosis. Immunol. Today 12, 322–326 (1991). 1755943 · DOI
- [211]Torres-Gomez, A., Cabañas, C. & Lafuente, E. M. Phagocytic integrins: activation and signaling. Front. Immunol. 11, 738 (2020). 32425937 PMC7203660 · DOI
- [212]Elomaa, O. et al. Cloning of a novel bacteria-binding receptor structurally related to scavenger receptors and expressed in a subset of macrophages. Cell 80, 603–609 (1995). 7867067 · DOI
- [213]Bowdish, D. M. & Gordon, S. Conserved domains of the class A scavenger receptors: evolution and function. Immunol. Rev. 227, 19–31 (2009). 19120472 · DOI
- [214]West, M. A. et al. Enhanced dendritic cell antigen capture via toll-like receptor-induced actin remodeling. Science 305, 1153–1157 (2004). 15326355 · DOI
- [215]Underhill, D. M. & Goodridge, H. S. Information processing during phagocytosis. Nat. Rev. Immunol. 12, 492–502 (2012). 22699831 PMC5570470 · DOI · Paper page
- [217]Lim, J. P. & Gleeson, P. A. Macropinocytosis: an endocytic pathway for internalising large gulps. Immunol. Cell Biol. 89, 836–843 (2011). 21423264 · DOI
- [218]Kruth, H. S. Receptor-independent fluid-phase pinocytosis mechanisms for induction of foam cell formation with native low-density lipoprotein particles. Curr. Opin. Lipidol. 22, 386–393 (2011). 21881499 PMC4174540 · DOI
- [219]Lou, J., Low-Nam, S. T., Kerkvliet, J. G. & Hoppe, A. D. Delivery of CSF-1R to the lumen of macropinosomes promotes its destruction in macrophages. J. Cell Sci. 127, 5228–5239 (2014). 25335894 PMC4265739
- [220]Nakase, I., Kobayashi, N. B., Takatani-Nakase, T. & Yoshida, T. Active macropinocytosis induction by stimulation of epidermal growth factor receptor and oncogenic Ras expression potentiates cellular uptake efficacy of exosomes. Sci. Rep. 5, 10300 (2015). 26036864 PMC4453128 · DOI
- [221]Xiao, F. et al. Macropinocytosis: mechanism and targeted therapy in cancers. Am. J. Cancer Res. 11, 14 (2021). 33520357 PMC7840718
- [222]Yoshida, S., Hoppe, A. D., Araki, N. & Swanson, J. A. Sequential signaling in plasma-membrane domains during macropinosome formation in macrophages. J. Cell Sci. 122, 3250–3261 (2009). 19690049 PMC2736863 · DOI
- [223]Liberali, P. et al. The closure of Pak1‐dependent macropinosomes requires the phosphorylation of CtBP1/BARS. EMBO J. 27, 970–981 (2008). 18354494 PMC2323256 · DOI
- [224]Kerr, M. C. et al. Visualisation of macropinosome maturation by the recruitment of sorting nexins. J. Cell Sci. 119, 3967–3980 (2006). 16968745 · DOI
- [225]Kaksonen, M. & Roux, A. Mechanisms of clathrin-mediated endocytosis. Nat. Rev. Mol. Cell Biol. 19, 313–326 (2018). 29410531 · DOI · Paper page
- [226]Mettlen, M. et al. Regulation of clathrin-mediated endocytosis. Annu. Rev. Biochem. 87, 871–896 (2018). 29661000 PMC6383209 · DOI · Paper page
- [227]Huang, F., Khvorova, A., Marshall, W. & Sorkin, A. Analysis of clathrin-mediated endocytosis of epidermal growth factor receptor by RNA interference. J. Biol. Chem. 279, 16657–16661 (2004). 14985334 · DOI
- [229]Daumke, O., Roux, A. & Haucke, V. BAR domain scaffolds in dynamin-mediated membrane fission. Cell 156, 882–892 (2014). 24581490 · DOI
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From serendipity to strategy: molecular glue degraders in cancer therapeutics
Darling, S., Bajrami, I., & West, S. C. (2025) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.1080/10409238.2025.2564068 · Cited by 10 · see citing works
“PROtAcs targeting PlK1, BtK, BRAF (v600e) and NtRK have exhibited promising pre-clinical and clinical success across a range of cancers (li et al. 2020; lier et al. 2022; Zhong et al. 2024).”
- Authors
- Zhong, G., Chang, X., Xie, W., & Zhou, X.
- Affiliations
- Shandong Provincial Hospital (CN)
- Zhengzhou University (CN)
- Shandong First Medical University (CN)
- Shandong University (CN)
- Corresponding author
- Xie, Weilin
- Zhou, Xiangxiang
- Venue
- Signal Transduction and Targeted Therapy
- Published
- 2024-11-06
- Volume
- 9
- Issue
- 1
- Pages
- 308-308
- ISSN
- 2059-3635 (ISSN-L)
- PMC
- PMC11539257
- OpenAlex
- W4404054585
- Cited by
- 326
- References
- 71
- Citations by year
- 2026: 190 · 2025: 135 · 2024: 1
- FWCI
- 13.33
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Signal Transduction and Targeted Therapy (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- National Natural Science Foundation of China (No. 82170189, No.81800194)
- Natural Science Foundation of Shandong Province (ZR2021YQ51)
- Shandong First Medical University
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Degradation and Inhibitors
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chemical Synthesis and Analysis
- Keywords
- targeted protein degradation, PROTACs, molecular glues, proteasome, lysosomal degradation, drug design, clinical trials, combination therapy, drug resistance, drug development
- MeSH terms
- Humans, Lysosomes, Proteasome Endopeptidase Complex, Drug Discovery, Proteolysis
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