Protein Analysis by Shotgun/Bottom-up Proteomics
Zhang, Yaoyang, Fonslow, Bryan R., Shan, Bing, Baek, Moon-Chang, Yates, John R.·2013·Chemical Reviews
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- Shotgun Proteomics and Mass Spectrometry as a Tool for Protein Identification and Profiling of Bio-Carrier-Based Therapeutics on Human Cancer CellsSyafiq Asnawi Zainal Abidin, Iekhsan Othman, Rakesh Naidu · 2020 · Methods in molecular biology
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- Predicting fragment intensities and retention time of iTRAQ‐ and TMTPro‐labeled peptides with Prosit‐TMTWassim Gabriel, Victor Giurcoiu, Ludwig Lautenbacher, Mathias Wilhelm · 2022 · PROTEOMICS
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- Progress in Top-Down LC-MS Analysis of Antibodies: ReviewJiwon You, Hae-Min Park · 2023 · Biotechnology and Bioprocess Engineering
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- Engineering Proteases for Mass Spectrometry‐Based Post Translational Modification AnalysesDuc T. Tran · 2018 · PROTEOMICS
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- Ultrafiltration strategy combined with nanoLC-MS/MS based proteomics for monitoring potential residual proteins in TCMIsDihui Xu, Chengli Yu, Jiaojiao Wang, Qiru Fan, Zhenzhong Wang, Wei Lie Xiao, Jin‐Ao Duan, Jing Zhou, Hongyue Ma · 2021 · Journal of Chromatography B
- Membrane transporters in salivary exosomes and microvesicles as biomarkers of systemic or oral diseaseYasuko Ishikawa, Tomasz D. Pieczonka, Aneta M Bragiel-Pieczonka · 2014 · Journal of Oral Biosciences
- Screening for target toxins of the antiophidic protein DM64 through a gel-based interactomics approachSabine Borges da Rocha, Ana Gisele C. Neves‐Ferreira, Monique R. O. Trugilho, Yamileth Angulo, Bruno Lomonte, Richard Hemmi Valente, Gilberto B. Domont, Jonás Perales · 2016 · Journal of Proteomics
- Reductive Desulfuration as an Important Tool in Detection of Small Molecule Modifications to Payload of Antibody Drug ConjugatesJianyao Wang, Wei Zhang, Rhys Salter, Heng‐Keang Lim · 2019 · Analytical Chemistry
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- Surface-Charged Hybrid Monolithic Column for MS-Compatible Peptide Separation with High Peak Capacity and Its Application in Proteomic AnalysisChao Wang, Yu Liang, Xue Yang, Bowen Zhong, Xiaodan Zhang, Baofeng Zhao, Zhen Liang, Lihua Zhang, Yukui Zhang · 2022 · Analytical Chemistry
- Library-based virtual match-between-runs quantification in GlyPep-Quant improves site-specific glycan identificationHe Zhu, Zheng Fang, Lei Liu, Yan Wang, Hongqiang Qin, Yongzhan Nie, Mingming Dong, Mingliang Ye · 2025 · Nature Communications
- TRIM28-mediated SUMOylation of G3BP1/2 regulates stress granule dynamicsYi Yuan, Zhimin Xu, Chenfang Si, Zan Gao, Xiaosong Liu, Yamei Yuan, Daichao Xu, Bing Shan, Yaoyang Zhang · 2025 · Cell chemical biology
- 高通量蛋白质组学分析研究进展Qiong Di Wu, Xintong Sui, Ruijun Tian · 2021 · Chinese Journal of Chromatography
- Site-specific protein modification by 3-n-butylphthalide in primary hepatocytes: Covalent protein adducts diminished by glutathione and N-acetylcysteineYaru Xue, Xuelian Ren, Zhengdan Zhu, Lei Peng, Mengling Liu, Mimi Wan, Dafang Zhong, He Huang, Xingxing Diao · 2021 · Life Sciences
- Advances in Activity‐Based Protein Profiling of Functional Tyrosines in ProteomesJeffrey W. Brulet, Anthony M. Ciancone, Kun Yuan, Ku‐Lung Hsu · 2023 · Israel Journal of Chemistry
- Gut dysbiosis and neurological modalities: An engineering approach via proteomic analysis of gut-brain axisMeenakshi Kandpal, Nidhi Varshney, Kunal Sameer Rawal, Hem Chandra Jha · 2024 · Advances in protein chemistry and structural biology
- Extracellular vesicles from the mycoparasitic fungus Trichoderma harzianumGabrielle Rosa Silva, Felipe de Pina Cavalcanti, Reynaldo Magalhães Melo, Emílio R. Cintra, Eliana Martins Lima, Pedro Ricardo Vieira Hamann, Luis Henrique Ferreira do Vale, Cirano José Ulhôa, Fausto Bruno dos Reis Almeida, Eliane Ferreira Noronha · 2024 · Antonie van Leeuwenhoek
- Applications of high performance liquid chromatography-mass spectrometry in proteomicsWei LIU, Lingxiao Weng, Mingxia Gao, Xiangmin Zhang · 2024 · Chinese Journal of Chromatography
- Divergent clinical, inflammatory, and histopathological responses induced by Amazonian Tityus venoms: insights and limitations of current antivenom therapyKarina Furlani Zoccal, Karla de Castro Figueiredo Bordon, Mouzarllem Barros Reis, Paloma Beatriz Rosa Nunes de Souza Chini, Jonas Gama Martins, Beatriz Acquaroni Zuanazzi, Gisele Adriano Wiezel, Ana Cristina Rodrigues dos Santos, Rudi Emerson de Lima Procópio, Eliane Candiani Arantes · 2025 · Biochimie
- Proteoforms: Methods of Analysis and Clinical ProspectsOlga I. Kiseleva, А.В. Лисица, Ekaterina Vladimirovna Poverennaya · 2018 · Molecular Biology
- Current Trends in Biotherapeutic Higher Order Structure Characterization by Irreversible Covalent Footprinting Mass SpectrometryNatalie K. Garcia, Galahad Deperalta, Aaron T. Wecksler · 2018 · Protein and Peptide Letters
- Role of ionomics in plant abiotic stress toleranceMohamed Ahmed El-Esawi, Rajeshwar Prasad Sinha, Devendra Kumar Chauhan, Durgesh Kumar Tripathi, Jainendra Pathak · 2020 · Elsevier eBooks
- Detecting differential protein abundance by combining peptide level P -valuesBryan Killinger, Vladislav Petyuk, Aaron Wright · 2020 · Molecular Omics
- Mass spectrometry based proteomics for developmental neurobiology in the amphibian Xenopus laevisAparna B. Baxi, Leena R. Pade, Péter Nemes · 2021 · Current topics in developmental biology/Current Topics in Developmental Biology
- Study of the geometry of open channels in a layer-bed-type microfluidic immobilized enzyme reactorCynthia Nagy, Róbert Huszánk, Attila Gáspár · 2021 · Analytical and Bioanalytical Chemistry
- Peptide Charge Derivatization as a Tool for Early Detection of Preeclampsia by Mass Spectrometry—A Comparison with the ELISA TestPaulina Grocholska, Andrzej Konieczny, Zuzanna Maria Kaźmierczak, Krystyna Dąbrowska, Karolina Panek–Laszczyńska, Marlena Kłak, Wojciech Witkiewicz, Zbigniew Szewczuk, Remigiusz Bąchor · 2021 · Molecules
- SecMS analysis of selenoproteins with selenocysteine insertion sequence and beyondChenfang Si, Ye Cao, Yaoyang Zhang · 2022 · Methods in enzymology on CD-ROM/Methods in enzymology
- Application of Proteomics in Apical PeriodontitisHeba Hussein, A. Kishen · 2022 · Frontiers in Dental Medicine
- High-Performance Thin-Layer Chromatography-Immunostaining as a Technique for the Characterization of Whey Protein Enrichment in Edam CheeseMascha Treblin, Tobias von Oesen, J. Lüneburg, Ingrid Clawin‐Rädecker, Dierk Martin, Katrin Schrader, Ralf Zink, Wolfgang U. Hoffmann, Jan Fritsche, Sascha Rohn · 2022 · Foods
- Statistical Analysis of Quantitative Peptidomics and Peptide-Level Proteomics Data with ProstarMarianne Tardif, Enora Fremy, Anne-Marie Hesse, Thomas Bürger, Yohann Couté, Samuel Wieczorek · 2021 · Methods in molecular biology
- Salt induced protein dynamics in young rice roots of osmybcc-1 mutant and its involvement in salt stressRebecca Njeri Damaris, Fengxue Tang, Xiaorong Fan, Zhongming Fang, Pingfang Yang, Ming Li · 2024 · Plant Stress
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- A Survey of the Impact of Deyolking on Biological Processes Covered by Shotgun Proteomic Analyses of Zebrafish EmbryosFatima Rahlouni, Szabolcs Szarka, Vladimir Shulaev, László Prókai · 2015 · Zebrafish
- Preparation of polymer brushes grafted graphene oxide by atom transfer radical polymerization as a new support for trypsin immobilization and efficient proteome digestionCong Guo, Xinyuan Zhao, Wanjun Zhang, Haihong Bai, Weijie Qin, Haifeng Song, Xiaohong Qian · 2017 · Analytical and Bioanalytical Chemistry
- Semi-supervised quality control method for proteome analyses based on tandem mass spectrometryElizaveta M. Solovyeva, Anna A. Lobas, Arthur Tigranovich Kopylov, Mikhail V. Gorshkov · 2017 · International Journal of Mass Spectrometry
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- Ion Mobility Separation Mass Spectrometry ImagingMarten F. Snel · 2018 · Comprehensive analytical chemistry
- The Power of Three in Cannabis Shotgun Proteomics: Proteases, Databases and Search EnginesDelphine Vincent, Keith W. Savin, Simone J. Rochfort, GERMAN C. SPANGENBERG · 2020 · Proteomes
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- High-Resolution Mass Spectrometry for In Vivo Proteome Dynamics using Heavy Water Metabolic LabelingRovshan G. Sadygov · 2020 · International Journal of Molecular Sciences
- A Review: Protein Identification by LC-MS: Principles, Instrumentation, and ApplicationsAbeer S. Alhendi · 2020 · Iraqi Journal of Science
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- Blood to Molecules: The Fossil Record of Blood and Its ConstituentsDale E. Greenwalt · 2021 · Topics in geobiology
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- Mass Spectrometry in Clinical Microbiology and Infectious DiseasesFrank Fleurbaaij, Hans C. van Leeuwen, Oleg I. Klychnikov, Ed J. Kuijper, Paul J. Hensbergen · 2015 · Chromatographia
- M2Lite: An Open-source, Light-weight, Pluggable and Fast Proteome Discoverer MSF to mzIdentML Tool.Paul Aiyetan, Bai Zhang, Lily Chen, Zhen Zhang, Hui Zhang · 2014 · PubMed
- Application of mass spectrometry in silkworm research—ReviewFan Sun, Chongjun Ye, Bing Li, Taichu Wang, Tao Fan · 2018 · Biomedical Chromatography
- Standard Flow Multiplexed Proteomics (SFloMPro)—An Accessible Alternative to NanoFlow Based Shotgun ProteomicsBenjamin C. Orsburn, Sierra D. Miller, Conor Jenkins · 2022 · Proteomes
- Assessing a commercial capillary electrophoresis interface (ZipChip) for shotgun proteomic applicationsAimee Rinas, Conor Jenkins, Benjamin C. Orsburn · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
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- Proteomics and proteoforms: Bottom-up or top-down, how to use high-resolution mass spectrometry to reach the GrailJoëlle Vinh · 2019 · Elsevier eBooks
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