Protein Analysis by Shotgun/Bottom-up Proteomics

Zhang, Yaoyang, Fonslow, Bryan R., Shan, Bing, Baek, Moon-Chang, Yates, John R.·2013·Chemical Reviews
DOI 10.1021/cr3003533

Cited by (1,000)

Items 801–900 of 1,000

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    Kaia Mattioli, Martha L. Bulyk · 2025 · Trends in Genetics
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    James H. Joly, Vivekananda Budamagunta, Zhengjian Zhang, Brittany Nortman, Maryam Jouzi, Rajat Bhatnagar, Jarrett D. Egertson, Michael E. Flaster, Rob Grothe, Sanjib K Guha et al. · 2026 · Nature Methods
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  26. Application of the emerging technologies in toxicogenomics: An overview
    So Yeon Yu, Saswati Paul, Seung Yong Hwang · 2016 · BioChip Journal
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    Harriet T. Parsons, Kathryn Susan Lilley · 2018 · Seminars in Cell and Developmental Biology
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  85. [Piglet castration--pain sensation and pain elimination].
    Véronique Waldmann, K H Otto, Wilhelm Bollwahn · 1994 · PubMed
  86. Fragmentation of Even‐Electron Ions
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