Protein Analysis by Shotgun/Bottom-up Proteomics

Cited by (1,000)

Items 401–500 of 1,000

1. Proteomic Strategies to Evaluate the Impact of Farming Conditions on Food Quality and Safety in Aquaculture Products
   Mónica Carrera, Carmen Piñeiro, Iciar Martı́nez · 2020 · Foods
2. Hydrophilic graphene oxide-dopamine-cationic cellulose composites and their applications in N-Glycopeptides enrichment
   Qianying Sheng, Junyan Li, Yingxin Chen, Xinmiao Liang, Minbo Lan · 2021 · Talanta
3. Nanostructure stable hydrophilic hierarchical porous metal-organic frameworks for highly efficient enrichment of glycopeptides
   Tianyi Zhu, Qinying Gu, Qiannan Liu, Xia Zou, Hongli Zhao, Yan Zhang, Chenlu Pu, Minbo Lan · 2021 · Talanta
4. Coupling suspension trapping–based sample preparation and data-independent acquisition mass spectrometry for sensitive exosomal proteomic analysis
   Ci Wu, Shiyun Zhou, Megan I. Mitchell, Chunyan Hou, Stephen W. Byers, Olivier D. Loudig, Junfeng Ma · 2022 · Analytical and Bioanalytical Chemistry
5. Strategies for Increasing the Depth and Throughput of Protein Analysis by plexDIA
   Jason Derks, Nikolai Slavov · 2023 · Journal of Proteome Research
6. Defining the Sarcomeric Proteoform Landscape in Ischemic Cardiomyopathy by Top-Down Proteomics
   Emily A. Chapman, Timothy J. Aballo, Jake A. Melby, Tianhua Zhou, Scott J. Price, Kalina J. Rossler, Ienglam Lei, Paul C. Y. Tang, Ying Ge · 2023 · Journal of Proteome Research
7. Direct Interface between Digital Microfluidics and High Performance Liquid Chromatography–Mass Spectrometry
   Chang Liu, Kihwan Choi, Yang Kang, Jihye Kim, Christian Fobel, Brendon Seale, J. Larry Campbell, Thomas R. Covey, Aaron R. Wheeler · 2015 · Analytical Chemistry
8. Plasma proteome coverage is increased by unique peptide recovery from sodium deoxycholate precipitate
   Aida Serra, Hongbin Zhu, Xavier Gallart‐Palau, Jung Eun Park, Hee Haw Ho, James P. Tam, Siu Kwan Sze · 2016 · Analytical and Bioanalytical Chemistry
9. Parsing disease‐relevant protein modifications from epiphenomena: perspective on the structural basis of SOD1‐mediated ALS
   Schmitt, N. D., Agar, J. N. · 2017 · Journal of Mass Spectrometry
10. Navigating the landscape of plant proteomics
    Tian Sang, Zhen Zhang, Guting Liu, Pengcheng Wang · 2025 · Journal of Integrative Plant Biology
11. Enzymatic Reactor with Trypsin Immobilized on Graphene Oxide Modified Polymer Microspheres To Achieve Automated Proteome Quantification
    Huiming Yuan, Shen Zhang, Baofeng Zhao, Yejing Weng, Xudong Zhu, Senwu Li, Lihua Zhang, Yukui Zhang · 2017 · Analytical Chemistry
12. In-depth proteomic analysis of boar spermatozoa through shotgun and gel-based methods
    Jean M. Feugang, Shengfa F. Liao, Scott T. Willard, Peter L. Ryan · 2018 · BMC Genomics
13. Mass Spectrometry-based Structural Analysis and Systems Immunoproteomics Strategies for Deciphering the Host Response to Endotoxin
    Mohd M. Khan, Orna Ernst, Jing Sun, Iain D. C. Fraser, Robert K. Ernst, David R. Goodlett, Aleksandra Nita‐Lazar · 2018 · Journal of Molecular Biology
14. Andrographolide Sulfonate Attenuates Acute Lung Injury by Reducing Expression of Myeloperoxidase and Neutrophil-Derived Proteases in Mice
    Fei Gao, Xing Liu, Ziying Shen, Xiaohui Jia, Han He, Jing Gao, Jianhong Wu, Chunhong Jiang, Hu Zhou, Yiping Wang · 2018 · Frontiers in Physiology
15. SWATH Based Quantitative Proteomics Reveals Significant Lipid Metabolism in Early Myopic Guinea Pig Retina
    Jingfang Bian, Ying Hon Sze, Dennis Y. Tse, Chi Ho To, Sally A. McFadden, Carly Siu Yin Lam, King Kit Li, Thomas Chuen Lam · 2021 · International Journal of Molecular Sciences
16. Trapped Ion Mobility Spectrometry, Ultraviolet Photodissociation, and Time-of-Flight Mass Spectrometry for Gas-Phase Peptide Isobars/Isomers/Conformers Discrimination
    Samuel A. Miller, Kévin Jeanne Dit Fouque, Mark E. Ridgeway, Melvin A. Park, Francisco Alberto Fernandez-Lima · 2022 · Journal of the American Society for Mass Spectrometry
17. Advances in stable isotope labeling: dynamic labeling for spatial and temporal proteomic analysis
    Nicole C. Beller, Amanda B. Hummon · 2022 · Molecular Omics
18. DirectMS1Quant: Ultrafast Quantitative Proteomics with MS/MS-Free Mass Spectrometry
    Mark V. Ivanov, Julia A. Bubis, Vladimir Gorshkov, Irina A. Tarasova, Lev I. Levitsky, Elizaveta M. Solovyeva, Anastasiya V. Lipatova, Frank Kjeldsen, Mikhail V. Gorshkov · 2022 · Analytical Chemistry
19. Characterization and implications of host‐cell protein aggregates in biopharmaceutical processing
    Young Hoon Oh, Matthew L. Becker, Kerri M. Mendola, Leila H. Choe, Lie Min, Kelvin H. Lee, Yinges Yigzaw, Alexander Seay, Jerome R. Bill, Xuanwen Li et al. · 2022 · Biotechnology and Bioengineering
20. Quantitative Proteomic Analysis of Oral Brush Biopsies Identifies Secretory Leukocyte Protease Inhibitor as a Promising, Mechanism-Based Oral Cancer Biomarker
    Ya Yang, Nelson L. Rhodus, Frank G. Ondrey, Beverly R. K. Wuertz, Xiaobing Chen, Yaqin Zhu, Timothy J. Griffin · 2014 · PLoS ONE
21. Confident Site Localization Using a Simulated Phosphopeptide Spectral Library
    Veronika Suni, Susumu Y. Imanishi, Alessio Maiolica, Ruedi H. Aebersold, Garry L. Corthals · 2015 · Journal of Proteome Research
22. Proteomics-Based Tools for Evaluation of Cell-Free Protein Synthesis
    Gregory B. Hurst, Keiji G. Asano, Charles J. Doktycz, Elliot J. Consoli, William L. Doktycz, Carmen M. Foster, Jennifer L. Morrell‐Falvey, Robert F. Standaert, Mitchel J. Doktycz · 2017 · Analytical Chemistry
23. Green synthesis of monolithic enzyme microreactor based on thiol-ene click reaction for enzymatic hydrolysis of protein
    Xue Zhao, Pei-Ru Fan, Chun‐E Mo, Yanping Huang, Zhao‐Sheng Liu · 2019 · Journal of Chromatography A
24. Fourier‐transform ion cyclotron resonance mass spectrometry for characterizing proteoforms
    Trisha Tucholski, Ying Ge · 2020 · Mass Spectrometry Reviews
25. Middle-Down Proteomic Analyses with Ion Mobility Separations of Endogenous Isomeric Proteoforms.
    Pavel V. Shliaha, V. Gorshkov, S. Kovalchuk, V. Schwämmle, Matthew A. Baird, A. Shvartsburg, O. Jensen · 2020 · Analytical Chemistry
26. Rp3: Ribosome profiling-assisted proteogenomics improves coverage and confidence during microprotein discovery
    Eduardo Vieira de Souza, Angie L. Bookout, Christopher A. Barnes, Brendan Miller, Pablo Machado, Luiz Augusto Basso, Cristiano Valim Bizarro, Alan Saghatelian · 2024 · Nature Communications
27. Post-Genomics Nanotechnology Is Gaining Momentum: Nanoproteomics and Applications in Life Sciences
    Firas H. Kobeissy, Basri Gülbakan, Ali Mostafa Alawieh, Pierre Karam, Zhiqun Zhang, Joy D. Guingab-Cagmat, Stefania Mondello, Weihong Tan, John Y. Anagli, Kevin Wang · 2014 · OMICS A Journal of Integrative Biology
28. Array-Based Online Two Dimensional Liquid Chromatography System Applied to Effective Depletion of High-Abundance Proteins in Human Plasma
    Zhi Huang, Guoquan Yan, Mingxia Gao, Xiangmin Zhang · 2016 · Analytical Chemistry
29. New‐generation mass spectrometry expands the toolbox of cell and developmental biology
    Camille Lombard‐Banek, Erika P. Portero, Rosemary M. Onjiko, Péter Nemes · 2017 · genesis
30. Comparison of Proteomic Quantification Approaches for Hepatic Drug Transporters: Multiplexed Global Quantitation Correlates with Targeted Proteomic Quantitation
    Anna M. Vildhede, Chuong Nguyen, Brian K. Erickson, Ryan C. Kunz, Richard C. Jones, Emi Kimoto, Francis Bourbonais, A. David Rodrigues, Manthena V. S. Varma · 2018 · Drug Metabolism and Disposition
31. Approaches to the discovery of non-invasive urinary biomarkers of prostate cancer
    Andrej Jedinak, Kevin R. Loughlin, Marsha A. Moses · 2018 · Oncotarget
32. A Nanocomposite Based on Reduced Graphene and Gold Nanoparticles for Highly Sensitive Electrochemical Detection of Pseudomonas aeruginosa through Its Virulence Factors
    Islem Gandouzi, Mihaela Tertiş, Andreea Cernat, Dalila Saidane‐Mosbahi, Aranka Ilea, Cécilia Cristea · 2019 · Materials
33. Accurate modelling of the retention behaviour of peptides in gradient-elution hydrophilic interaction liquid chromatography
    Liana S. Roca, Suzan E. Schoemaker, Bob W.J. Pirok, Andrea Gargano, Peter J. Schoenmakers · 2019 · Journal of Chromatography A
34. Risk factors and future directions for preventing and diagnosing exertional rhabdomyolysis
    Andréia Carneiro, Diego Viana Gomes, Janaína Macedo-da-Silva, Giscard Humberto Oliveira Lima, Simone Mitri, Sérgio Rabello Alves, Alexander Kolliari-Turner, Edmar Zanoteli, Francisco Radler de Aquino Neto, Giuseppe Palmisano et al. · 2021 · Neuromuscular Disorders
35. Separation of intact proteins by capillary electrophoresis
    Sarah Meyer, David Clases, Raquel González de Vega, Matthew Paul Padula, Philip Doble · 2022 · The Analyst
36. Neutral-Coating Capillary Electrophoresis Coupled with High-Resolution Mass Spectrometry for Top-Down Identification of Hemoglobin Variants
    Yiqi Ruben Luo, Carolyn V Wong, James Qiangwei Xia, Bertil E. Glader, Run‐Zhang Shi, James L. Zehnder · 2022 · Clinical Chemistry
37. Acetic Acid Ion Pairing Additive for Reversed-Phase HPLC Improves Detection Sensitivity in Bottom-up Proteomics Compared to Formic Acid
    Taylor Battellino, Kosuke Ogata, Victor Spicer, Yasushi Ishihama, Oleg V. Krokhin · 2022 · Journal of Proteome Research
38. An overview of omics approaches to characterize the effect of perfluoroalkyl substances in environmental health
    Xinglei Yao, Dong Cao, Fengbang Wang, Wenjuan Zhang, Chunyan Ma, Maoyong Song · 2019 · TrAC Trends in Analytical Chemistry
39. Critical review of new advances in food and plant proteomics analyses by nano-LC/MS towards advanced foodomics
    Cemil Aydoğan · 2024 · TrAC Trends in Analytical Chemistry
40. Data‐Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome
    Andrew T. Rajczewski, J. Alfredo Blakeley‐Ruiz, Annaliese Meyer, Simina Vintila, Matthew R. McIlvin, Tim Van Den Bossche, Brian C. Searle, Timothy J. Griffin, Mak A. Saito, Manuel Kleiner et al. · 2025 · PROTEOMICS
41. Multi-omics strategies to decode the molecular landscape of cellular senescence
    Manuela Giovanna Basilicata, Eduardo Sommella, Lucia Scisciola, Giovanni Tortorella, Marco Malavolta, Chiara Giordani, Michelangela Barbieri, Pietro Campiglia, Giuseppe Paolisso · 2025 · Ageing Research Reviews
42. A cyclic-olefin-copolymer microfluidic immobilized-enzyme reactor for rapid digestion of proteins from dried blood spots
    Bert Wouters, Irena Đapić, Thalassa S. E. Valkenburg, Sam Wouters, Leon Ewoud Niezen, Sebastiaan Eeltink, Garry L. Corthals, Peter J. Schoenmakers · 2017 · Journal of Chromatography A
43. Database-independent Protein Sequencing (DiPS) Enables Full-length de Novo Protein and Antibody Sequence Determination
    Alon Savidor, Rotem Barzilay, Dalia Elinger, Yosef Yarden, Moshit Lindzen, Alexandra Gabashvili, Ophir Adiv Tal, Yishai Levin · 2017 · Molecular & Cellular Proteomics
44. Proteomics of Colorectal Cancer: Tumors, Organoids, and Cell Cultures—A Minireview
    Philip H. Lindhorst, Amanda B. Hummon · 2020 · Frontiers in Molecular Biosciences
45. Differential Ion Mobility Separations of d / l Peptide Epimers
    Francis Berthias, Matthew A. Baird, Alexandre A. Shvartsburg · 2021 · Analytical Chemistry
46. Quality Control—A Stepchild in Quantitative Proteomics: A Case Study for the Human CSF Proteome
    Svitlana Rozanova, Julian Uszkoreit, Karin Schork, Bettina Serschnitzki, Martin Eisenacher, Lars Tönges, Katalin Barkovits, Katrin Marcus · 2023 · Biomolecules
47. Toward the complete proteome of Synechocystis sp. PCC 6803
    Liyan Gao, Jinlong Wang, Haitao Ge, Longfa Fang, Yuanya Zhang, Xiahe Huang, Yingchun Wang · 2015 · Photosynthesis Research
48. Gaussian Process Modeling of Protein Turnover
    Mahbubur Rahman, Stephen F. Previs, Takhar Kasumov, Rovshan G. Sadygov · 2016 · Journal of Proteome Research
49. Proteomic profiling reveals candidate markers for arsenic-induced skin keratosis
    Zhiling Guo, Qin Hu, Jijing Tian, Yan Li, Chuanyong Jing, Heidi Qunhui Xie, Wenjun Bao, Robert H. Rice, Bin Zhao, Guibin Jiang · 2016 · Environmental Pollution
50. Quick 96FASP for high throughput quantitative proteome analysis
    Yanbao Yu, Shiferaw Bekele, Rembert Pieper · 2017 · Journal of Proteomics
51. Use of monolithic supports for high‐throughput protein and peptide separation in proteomics
    Uroš Andjelković, Srđan Tufegdžić, Milica Popović · 2017 · Electrophoresis
52. Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families
    Leah V. Schaffer, Michael R. Shortreed, Anthony J. Cesnik, Brian L. Frey, Stefan K. Solntsev, Mark Scalf, Lloyd M. Smith · 2017 · Analytical Chemistry
53. Improved Nanoflow RPLC-CZE-MS/MS System with High Peak Capacity and Sensitivity for Nanogram Bottom-up Proteomics
    Zhichang Yang, Xiaojing Shen, Daoyang Chen, Liangliang Sun · 2019 · Journal of Proteome Research
54. Examining the Influence of Phosphorylation on Peptide Ion Structure by Ion Mobility Spectrometry-Mass Spectrometry
    Matthew S. Glover, Jonathan M. Dilger, Matthew D. Acton, Randy J. Arnold, Predrag Radivojac A, David E. Clemmer · 2016 · Journal of the American Society for Mass Spectrometry
55. A Galaxy of informatics resources for MS-based proteomics
    Subina Mehta, Matthias Bernt, Matthew Chambers, Matthias Fahrner, Melanie Christine Föll, Bjoern Gruening, Carlos Horro, James E. Johnson, Valentin Loux, Andrew T. Rajczewski et al. · 2023 · Expert Review of Proteomics
56. Development and performance evaluation of an ultralow flow nanoliquid chromatography‐tandem mass spectrometry set‐up
    Thomas Köcher, Peter Pichler, Mauro De Pra, Laurent Rieux, Remco Swart, Karl Mechtler · 2014 · PROTEOMICS
57. Regulation of highly homologous major urinary proteins in house mice quantified with label-free proteomic methods
    V. M. Enk, Christian Baumann, Michaela Thoß, Kenneth C. Luzynski, Ebrahim Razzazi‐Fazeli, Dustin J. Penn · 2016 · Molecular BioSystems
58. Over 4100 protein identifications from a Xenopus laevis fertilized egg digest using reversed‐phase chromatographic prefractionation followed by capillary zone electrophoresis–electrospray ionization–tandem mass spectrometry analysis
    Xiaojing Yan, Liangliang Sun, Guijie Zhu, Olivia F. Cox, Norman J. Dovic̀hi · 2016 · PROTEOMICS
59. Improved gel-enhanced liquid chromatography-mass spectrometry by chemometrics for halal proteomics
    Mohd Hafis Yuswan, Wan Mohd Aizat, Mohd Nasir Mohd Desa, Amalia Mohd Hashim, Nur Ajreena Rahim, Shuhaimi Mustafa, Rozi Mohamed, Dhilia Udie Lamasudin · 2019 · Chemometrics and Intelligent Laboratory Systems
60. In Situ Hydrogel Extraction with Dual-Enzyme Digestion of Proteinaceous Binders: the Key for Reliable Mass Spectrometry Investigations of Artworks
    Cosima Damiana Calvano, Elena C.L. Rigante, Tommaso R. I. Cataldi, Luigia Sabbatini · 2020 · Analytical Chemistry
61. Genomic, proteomic, and systems biology approaches in biomarker discovery for multiple sclerosis
    Carol Chase Huizar, Itay Raphael, Thomas G. Forsthuber · 2020 · Cellular Immunology
62. The utility of proteases in proteomics, from sequence profiling to structure and function analysis
    Binwen Sun, Zheyi Liu, Jin Liu, Shan Zhao, Liming Wang, Fangjun Wang · 2022 · PROTEOMICS
63. High-quality and robust protein quantification in large clinical/pharmaceutical cohorts with IonStar proteomics investigation
    Shichen Shen, Xue Wang, Xiaoyu Zhu, Sailee Suryakant Rasam, Min Ma, Shihan Huo, Shuo Qian, Ming Zhang, Miao Qu, Chenqi Hu et al. · 2022 · Nature Protocols
64. Unraveling the small proteome of the plant symbiont Sinorhizobium meliloti by ribosome profiling and proteogenomics
    Lydia Hadjeras, Benjamin Heiniger, Sandra Maaß, Robina Scheuer, Rick Gelhausen, Saina Azarderakhsh, Susanne Barth-Weber, Rolf Backofen, Dörte Becher, Christian H. Ahrens et al. · 2023 · microLife
65. Strategies in protein sequencing and characterization: Multi-enzyme digestion coupled with alternate CID/ETD tandem mass spectrometry
    Donatella Nardiello, Carmen Palermo, Anna Natale, Maurizio Quinto, Diego Centonze · 2014 · Analytica Chimica Acta
66. SpotLight Proteomics: uncovering the hidden blood proteome improves diagnostic power of proteomics
    Susanna L. Lundström, Bo Zhang, Dorothea Rutishauser, Dag Aarsland, Roman A. Zubarev · 2017 · Scientific Reports
67. Profiling of Protein N-Termini and Their Modifications in Complex Samples
    Fatih Demir, Stefan Niedermaier, Jayachandran N. Kizhakkedathu, Pitter F. Huesgen · 2017 · Methods in molecular biology
68. Molecular diagnostics in oral cancer and oral potentially malignant disorders—A clinician’s guide
    Tami Yap, Antonio Celentano, Christine A. Seers, Michael John McCullough, Camile Selim Farah · 2019 · Journal of Oral Pathology and Medicine
69. Development of Immobilized Enzyme Reactors for the characterization of the glycosylation heterogeneity of a protein
    Stan Perchepied, Nicolas Eskenazi, Chiara Giangrande, Julien Camperi, Thierry Fournier, Joëlle Vinh, Nathalie Delaunay, Valérie Pichon · 2019 · Talanta
70. The Cannabis Proteome Draft Map Project
    Conor Jenkins, Benjamin C. Orsburn · 2020 · International Journal of Molecular Sciences
71. Heat and Pressure Resistance in Escherichia coli Relates to Protein Folding and Aggregation
    Hui Li, Ryan G. Mercer, Jürgen Behr, Stephanie Heinzlmeir, Lynn M. McMullen, Rudi F. Vogel, Michael G. Gänzle · 2020 · Frontiers in Microbiology
72. Single‐Cell Mass Spectrometry for Discovery Proteomics: Quantifying Translational Cell Heterogeneity in the 16‐Cell Frog (Xenopus) Embryo
    Camille Lombard‐Banek, Sally A. Moody, Péter Nemes · 2016 · Angewandte Chemie
73. Chemical proteomics accelerates the target discovery of natural products
    Shujie He, Jun Li, Jie-Chun Zhou, Zhiyou Yang, Xi Liu, Yue‐Wei Ge · 2024 · Biochemical Pharmacology
74. Differentiating Sulfopeptide and Phosphopeptide Ions via Resonant Infrared Photodissociation
    Amanda L. Patrick, Corey N. Stedwell, Nicolas C. Polfer · 2014 · Analytical Chemistry
75. Global proteomic responses of sublethally injured Staphylococcus aureus induced by ohmic heating
    Lele Shao, Yi Liu, Xiaojing Tian, Bo Zou, Yijie Zhao, Xingmin Li, Ruitong Dai · 2021 · Food Control
76. Omics technologies for high-throughput-screening of cell–biomaterial interactions
    Buse Sari, Melis Işık, Cemil Can Eylem, Cemile Kilic Bektas, Babatunde O. Okesola, Ece Karakaya, Emel Emregül, Emirhan Nemutlu, Burak Derkuş · 2022 · Molecular Omics
77. Preparation of an improved hydrophilic monolith to make trypsin-immobilized microreactors
    Kinga Meller, Paweł Pomastowski, Michał Szumski, Bogusław Buszewski · 2016 · Journal of Chromatography B
78. Angiogenic and Immunologic Proteins Identified by Deep Proteomic Profiling of Human Retinal and Choroidal Vascular Endothelial Cells: Potential Targets for New Biologic Drugs
    Justine R. Smith, Larry L. David, Binoy Appukuttan, Phillip A. Wilmarth · 2018 · American Journal of Ophthalmology
79. Quantitative proteomic analysis of tomato genotypes with differential cadmium tolerance
    Karina Lima Reis Borges, Fernanda Salvato, Philip L. Loziuk, David C. Muddiman, Ricardo Antunes Azevedo · 2019 · Environmental Science and Pollution Research
80. In-Depth Investigation of Low-Abundance Proteins in Matured and Filling Stages Seeds of Glycine max Employing a Combination of Protamine Sulfate Precipitation and TMT-Based Quantitative Proteomic Analysis
    Cheol Woo Min, Joonho Park, Jin‐Woo Bae, Ganesh Kumar Agrawal, Randeep Rakwal, Youngsoo Kim, Pingfang Yang, Sun Tae Kim, Ravi Gupta · 2020 · Cells
81. Recent Advances in Bioanalytical Methods for Quantification and Pharmacokinetic Analyses of Antibody–Drug Conjugates
    Raymond Khan, Yi Zeng, Abdul-Azeez A. Lanihun, Oluwatobi T. Arisa, Jonathan Horner, William Douglas Figg · 2025 · The AAPS Journal
82. Small Proteins in Archaea, a Mainly Unexplored World
    Katrin Weidenbach, Miriam Gutt, Liam Cassidy, Cynthia Maria Chibani, Ruth A. Schmitz · 2021 · Journal of Bacteriology
83. DeGlyPHER: An Ultrasensitive Method for the Analysis of Viral Spike N -Glycoforms
    Sabyasachi Baboo, Jolene K. Diedrich, Salvador Martínez‐Bartolomé, Xiaoning Wang, Torben Schiffner, Bettina Gröschel, William R. Schief, James C. Paulson, John R. Yates · 2021 · Analytical Chemistry
84. Development and Provisional Validation of a Multiplex LC-MRM-MS Test for Timely Kidney Injury Detection in Urine
    Tirsa T van Duijl, L. Renee Ruhaak, Nico P.M. Smit, Mervin Pieterse, Fred P.H.T.M. Romijn, Natasja Dolezal, Jan Wouter Drijfhout, Johan Willem de Fijter, Christa M. Cobbaert · 2021 · Journal of Proteome Research
85. Unveiling and application of the chicken egg proteome: An overview on a two-decade achievement
    Yaqi Meng, Ning Qiu, Vincent Guyonnet, Yoshinori Mine · 2022 · Food Chemistry
86. Impact of Protease on Ultraviolet Photodissociation Mass Spectrometry for Bottom-up Proteomics
    Sylvester M. Greer, W. Ryan Parker, Jennifer S. Brodbelt · 2015 · Journal of Proteome Research
87. High-Sensitivity Mass Spectrometry for Probing Gene Translation in Single Embryonic Cells in the Early Frog (Xenopus) Embryo
    Camille Lombard‐Banek, Sally A. Moody, Péter Nemes · 2016 · Frontiers in Cell and Developmental Biology
88. Direct Monitoring of Protein O-GlcNAcylation by High-Resolution Native Mass Spectrometry
    Aneika C. Leney, Karim Rafie, Daan M. F. van Aalten, Albert J. R. Heck · 2017 · ACS Chemical Biology
89. Acid/Salt/pH Gradient Improved Resolution and Sensitivity in Proteomics Study Using 2D SCX-RP LC–MS
    Mingzhi Zhu, Na Li, Yitong Wang, Ning Liu, Mingquan Guo, Baoqing Sun, Hua Zhou, Liang Liu, Jian‐Lin Wu · 2017 · Journal of Proteome Research
90. Impact of diet-induced obesity on the mouse brain phosphoproteome
    Valentina Siino, Antonella Amato, Francesca Di Salvo, G Caldara, Marcello Filogamo, Peter James, Sonya Vasto · 2018 · The Journal of Nutritional Biochemistry
91. Controlled cellular redox, repressive hemin utilization and adaptive stress responses are crucial to metronidazole tolerance of Porphyromonas gingivalis persisters
    Peng Li, Yi Man Eva Fung, Xiaohui Yin, Chaminda Jayampath Seneviratne, Chi‐Ming Che, Lijian Jin · 2018 · Journal Of Clinical Periodontology
92. Oncoproteomics: Current status and future opportunities
    Yujia He, Abidali Mohamedali, Canhua Huang, Mark S. Baker, Edouard Collins Nice · 2019 · Clinica Chimica Acta
93. Detection and Characterization of Catechol Quinone-Derived Protein Adducts Using Biomolecular Mass Spectrometry
    Shu‐Hui Chen, Chun‐Wei Li · 2019 · Frontiers in Chemistry
94. ExteNDing Proteome Coverage with Legumain as a Highly Specific Digestion Protease
    Wai Tuck Soh, Fatih Demir, Elfriede Dall, Andreas Perrar, Sven O. Dahms, Maithreyan Kuppusamy, Hans Brandstetter, Pitter F. Huesgen · 2020 · Analytical Chemistry
95. Multiple Classes of Antimicrobial Peptides in Amaranthus tricolor Revealed by Prediction, Proteomics, and Mass Spectrometric Characterization
    Tessa B. Moyer, Jessie L. Allen, Lindsey Neil Shaw, Leslie M. Hicks · 2021 · Journal of Natural Products
96. Re-configurable, multi-mode contained-electrospray ionization for protein folding and unfolding on the millisecond time scale
    Colbert F. Miller, Dmytro S. Kulyk, Jongin W. Kim, Abraham Kwame Badu-Tawiah · 2017 · The Analyst
97. De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
    Kevin Eloff, Konstantinos Kalogeropoulos, Oliver Morell, Amandla Mabona, Jakob Berg Jespersen, Wesley Williams, Sam P. B. van Beljouw, Marcin J. Skwark, Andreas H. Laustsen, Stan J. J. Brouns et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
98. Sequence Coverage Visualizer: A Web Application for Protein Sequence Coverage 3D Visualization
    Shao, Xinhao, Grams, Christopher, Gao, Yu · 2023 · Journal of Proteome Research
99. Bolt: a New Age Peptide Search Engine for Comprehensive MS/MS Sequencing Through Vast Protein Databases in Minutes
    Amol Prakash, Shadab Ahmad, Swetaketu Majumder, Conor Jenkins, Benjamin C. Orsburn · 2019 · Journal of the American Society for Mass Spectrometry
100. Shot-gun proteomics: why thousands of unidentified signals matter
     Maxime den Ridder, Pascale A. S. Daran-Lapujade, Martin Pabst · 2019 · FEMS Yeast Research