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Electrophilic Fragment-Based Design of Reversible Covalent Kinase Inhibitors

Open access
Miller, Rand M., Paavilainen, Ville O., Krishnan, Shyam, Serafimova, Iana M., Taunton, Jack·2013·Journal of the American Chemical Society

Abstract

Fragment-based ligand design and covalent targeting of noncatalytic cysteines have been employed to develop potent and selective kinase inhibitors. Here, we combine these approaches, starting with a panel of low-molecular-weight, heteroaryl-susbstituted cyanoacrylamides, which we have previously shown to form reversible covalent bonds with cysteine thiols. Using this strategy, we identify electrophilic fragments with sufficient ligand efficiency and selectivity to serve as starting points for the first reported inhibitors of the MSK1 C-terminal kinase domain. Guided by X-ray co-crystal structures, indazole fragment 1 was elaborated to afford 12 (RMM-46), a reversible covalent inhibitor that exhibits high ligand efficiency and selectivity for MSK/RSK-family kinases. At nanomolar concentrations, 12 blocked activation of cellular MSK and RSK, as well as downstream phosphorylation of the critical transcription factor, CREB.

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Authors
Miller, R. M., Paavilainen, V. O., Krishnan, S., Serafimova, I. M., & Taunton, J.
Venue
Journal of the American Chemical Society
Published
2013-03-29
Volume
135
Issue
14
Pages
5298-5301
ISSN
  • 0002-7863 (ISSN-L)
  • 1520-5126
OpenAlex
W2019792957
Cited by
191
References
0
FWCI
6.33
Type
journal article
Language
en
Open access
green

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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.