Cited by 90Origins and Evolution of LifeRNA and protein synthesis mechanismsEvolution and Genetic Dynamics

Copying of Mixed-Sequence RNA Templates inside Model Protocells

Open access
O’Flaherty, Derek K., Kamat, Neha P., Mirza, Fatima N., Li, Li, Prywes, Noam, Szostak, Jack W.·2018·Journal of the American Chemical Society

Abstract

The chemical replication of RNA inside fatty acid vesicles is a plausible step in the emergence of cellular life. On the primitive Earth, simple protocells with the ability to import nucleotides and short oligomers from their environment could potentially have replicated and retained larger genomic RNA oligonucleotides within a spatially defined compartment. We have previously shown that short 5′-phosphoroimidazolide-activated “helper” RNA oligomers enable the nonenzymatic copying of mixed-sequence templates in solution, using 5′-phosphoroimidazolide-activated mononucleotides. Here, we report that citrate-chelated Mg2+, a catalyst of nonenzymatic primer extension, enhances fatty acid membrane permeability to such short RNA oligomers up to the size of tetramers, without disrupting vesicle membranes. In addition, selective permeability of short, but not long, oligomers can be further enhanced by elevating the temperature. The ability to increase the permeability of fatty acid membranes to short oligonucleotides allows for the nonenzymatic copying of RNA templates containing all four nucleotides inside vesicles, bringing us one step closer to the goal of building a protocell capable of Darwinian evolution.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1021/jacs.8b00639

Cites

8 of 8 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • It has been possible to copy short RNA templates inside fatty acid vesicles following the addition of activated monomers and trimers to the outside of the vesicles.

    “it has been possible to copy short RNA templates inside fatty acid vesicles following the addition of activated monomers and trimers to the outside of the vesicles”

    From Protocells and RNA Self-Replication (2018) · cites this paper as O'Flaherty et al. 2018

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 33

  1. Szostak J. W.; Bartel D. P.; Luisi P. L. Nature 2001, 409, 387– 390. 10.1038/35053176. 11201752 · DOI · Paper page
  2. Chen I. A.; Walde P. Cold Spring Harb. Perspect. Biol. 2010, 2 (7), 1– 14. PMC2890201 20519344
  3. Hargreaves W. R.; Deamer D. W. Biochemistry 1978, 17 (18), 3759– 3768. 10.1021/bi00611a014. 698196 · DOI
  4. Orgel L. E. J. Mol. Biol. 1968, 38 (3), 381– 393. 10.1016/0022-2836(68)90393-8. 5718557 · DOI · Paper page
  5. Pace N. R.; Marsh T. L. Origins Life Evol. Biospheres 1985, 16 (2), 97– 116. 10.1007/BF01809465. 2423941 · DOI
  6. Grochmal A.; Prout L.; Makin-Taylor R.; Prohens R.; Tomas S. J. Am. Chem. Soc. 2015, 137 (38), 12269– 12275. 10.1021/jacs.5b06207. 26356087 · DOI
  7. Adamala K. P.; Engelhart A. E.; Szostak J. W. Nat. Commun. 2016, 7, 11041 10.1038/ncomms11041. 26996603 PMC4802160 · DOI
  8. Kamat N. P.; Tobé S.; Hill I. T.; Szostak J. W. Angew. Chem., Int. Ed. 2015, 54, 11735– 11739. 10.1002/anie.201505742. PMC4600236 26223820 · DOI
  9. Deamer D.; Dworkin J. P.; Sandford S. A.; Bernstein M. P.; Allamandola L. J. Astrobiology 2003, 2, 371– 381. 10.1089/153110702762470482. 12593777 · DOI · Paper page
  10. Mansy S. S. Cold Spring Harbor Perspect. Biol. 2010, 2, a002188 10.1101/cshperspect.a002188. PMC2908771 20679338 · DOI
  11. Joyce G. F. Nature 1989, 338, 217– 224. 10.1038/338217a0. 2466202 · DOI · Paper page
  12. Chan C. T. Y.; Dyavaiah M.; DeMott M. S.; Taghizadeh K.; Dedon P. C.; Begley T. J. PLoS Genet. 2010, 6, e1001247 10.1371/journal.pgen.1001247. 21187895 PMC3002981 · DOI
  13. Robertson M. P.; Joyce G. F.; Noller H. F.; Volpe T.; Martienssen R. A. Cold Spring Harbor Perspect. Biol. 2012, 4, a003608 10.1101/cshperspect.a003608. PMC3331698 20739415 · DOI · Paper page
  14. Mansy S. S.; Schrum J. P.; Krishnamurthy M.; Tobé S.; Treco D. a.; Szostak J. W. Nature 2008, 454 (7200), 122– 125. 10.1038/nature07018. 18528332 PMC2743009 · DOI · Paper page
  15. Adamala K.; Szostak J. W. Science 2013, 342, 1098– 1100. 10.1126/science.1241888. 24288333 PMC4104020 · DOI · Paper page
  16. Wu T.; Orgel L. E. J. Am. Chem. Soc. 1992, 114 (14), 5496– 5501. 10.1021/ja00040a002. 11538402 · DOI
  17. Prywes N.; Blain J. C.; Del Frate F.; Szostak J. W. eLife 2016, 5, e17756 10.7554/eLife.17756. 27351102 PMC4959843 · DOI · Paper page
  18. Walton T.; Szostak J. W. J. Am. Chem. Soc. 2016, 138, 11996– 12002. 10.1021/jacs.6b07977. 27552367 PMC6326528 · DOI · Paper page
  19. Li L.; Prywes N.; Tam C. P.; O’Flaherty D. K.; Lelyveld V. S.; Izgu E. C.; Pal A.; Szostak J. W. J. Am. Chem. Soc. 2017, 139 (5), 1810– 1813. 10.1021/jacs.6b13148. 28117989 PMC6326525 · DOI · Paper page
  20. Walton T.; Szostak J. W. Biochemistry 2017, 56 (43), 5739– 5747. 10.1021/acs.biochem.7b00792. 29022704 PMC6340129 · DOI · Paper page
  21. Giurgiu C.; Li L.; O’Flaherty D. K.; Tam C. P.; Szostak J. W. J. Am. Chem. Soc. 2017, 139 (46), 16741– 16747. 10.1021/jacs.7b08784. 29112424 PMC6326530 · DOI
  22. Fahrenbach A. C.; Giurgiu C.; Tam C. P.; Li L.; Hongo Y.; Aono M.; Szostak J. W. J. Am. Chem. Soc. 2017, 139, 8780– 8783. 10.1021/jacs.7b01562. 28640999 PMC6326526 · DOI · Paper page
  23. Yi R.; Hongo Y.; Fahrenbach A. C. Chem. Commun. 2018, 54, 511– 514. 10.1039/C7CC08489G. 29264602 · DOI
  24. Treyer M.; Walde P.; Oberholzer T. Langmuir 2002, 18 (4), 1043– 1050. 10.1021/la011111u. · DOI
  25. Boon J. M.; Smith B. D. Curr. Opin. Chem. Biol. 2002, 6 (6), 749– 756. 10.1016/S1367-5931(02)00399-X. 12470727 · DOI
  26. Davidsen J.; Mouritsen O. G.; Jorgensen K. Biochim. Biophys. Acta, Biomembr. 2002, 1564 (1), 256– 262. 10.1016/S0005-2736(02)00461-3. 12101020 · DOI
  27. Chen I. A.; Salehi-Ashtiani K.; Szostak J. W. J. Am. Chem. Soc. 2005, 127 (38), 13213– 13219. 10.1021/ja051784p. 16173749 PMC5072289 · DOI · Paper page
  28. McCollom T. M.; Ritter G.; Simoneit B. R. T. Origins Life Evol. Biospheres 1999, 29, 153– 166. 10.1023/A:1006592502746. 10227201 · DOI · Paper page
  29. Lawless J. G.; Yuen G. U. Nature 1979, 282, 396– 398. 10.1038/282396a0. · DOI
  30. Clary L.; Verderone G.; Santaella C.; Vierling P. Biochim. Biophys. Acta, Biomembr. 1997, 1328, 55– 64. 10.1016/S0005-2736(97)00076-X. 9298945 · DOI
  31. Heuberger B. D.; Pal A.; Del Frate F.; Topkar V. V.; Szostak J. W. J. Am. Chem. Soc. 2015, 137, 2769– 2775. 10.1021/jacs.5b00445. 25654265 PMC4985000 · DOI · Paper page
  32. Ma W.; Yu C.; Zhang W.; Hu J. RNA 2007, 13, 2012– 2019. 10.1261/rna.658507. 17878321 PMC2040096 · DOI
  33. Ma W. Life 2017, 7, 49 10.3390/life7040049. · DOI

Cited by

Sorted by citations

Authors
O’Flaherty, D. K., Kamat, N. P., Mirza, F. N., Li, L., Prywes, N., & Szostak, J. W.
Affiliations
  • Howard Hughes Medical Institute (US)
  • Northwestern University (US)
Corresponding author
  • Kamat, Neha P.
  • Szostak, Jack W.
Venue
Journal of the American Chemical Society
Published
2018-04-02
Volume
140
Issue
15
Pages
5171-5178
ISSN
  • 0002-7863 (ISSN-L)
  • 1520-5126
OpenAlex
W2795453866
Cited by
90
References
8
Citations by year
2026: 6 · 2025: 4 · 2024: 13 · 2023: 11 · 2022: 7 · 2021: 14 · 2020: 10 · 2019: 20 · 2018: 5
FWCI
6.60
Type
journal article
Language
en
Open access
Locations
  • Journal of the American Chemical Society (publishedVersion, other-oa)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
Funders
  • Howard Hughes Medical Institute (NA)
  • National Aeronautics and Space Administration (NA)
  • Division of Chemistry (CHE-1607034)
  • Simons Foundation (290363)
  • Chicago Community Trust (NA)
Topics
  • Physical Sciences › Physics and Astronomy › Astronomy and Astrophysics › Origins and Evolution of Life
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
Keywords
protocells, fatty acid vesicles, membrane permeability, origin of life, early Earth, Darwinian evolution
MeSH terms
Base Sequence, Fatty Acids, Magnesium, RNA, Temperature, Citric Acid

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review