The DOI matches its Crossref record; 43 of the 43 references it cites were found in a registry or an index.
DNA Base Detection Using a Single-Layer MoS2
Abstract
Nanopore-based DNA sequencing has led to fast and high-resolution recognition and detection of DNA bases. Solid-state and biological nanopores have low signal-to-noise ratio (SNR) (< 10) and are generally too thick (> 5 nm) to be able to read at single-base resolution. A nanopore in graphene, a 2-D material with sub-nanometer thickness, has a SNR of ∼3 under DNA ionic current. In this report, using atomistic and quantum simulations, we find that a single-layer MoS2 is an extraordinary material (with a SNR > 15) for DNA sequencing by two competing technologies (i.e., nanopore and nanochannel). A MoS2 nanopore shows four distinct ionic current signals for single-nucleobase detection with low noise. In addition, a single-layer MoS2 shows a characteristic change/response in the total density of states for each base. The band gap of MoS2 is significantly changed compared to other nanomaterials (e.g., graphene, h-BN, and silicon nanowire) when bases are placed on top of the pristine MoS2 and armchair MoS2 nanoribbon, thus making MoS2 a promising material for base detection via transverse current tunneling measurement. MoS2 nanopore benefits from a craftable pore architecture (combination of Mo and S atoms at the edge) which can be engineered to obtain the optimum sequencing signals.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Generalized Gradient Approximation Made Simple
Perdew, J. P., Burke, K., & Ernzerhof, M. (1996) · Physical Review Letters · doi:10.1103/physrevlett.77.3865 · Cited by 215,824
Special points for Brillouin-zone integrations
Monkhorst, H. J., & Pack, J. D. (1976) · Physical Review B · doi:10.1103/physrevb.13.5188 · Cited by 71,721
Fast Parallel Algorithms for Short-Range Molecular Dynamics
Plimpton, S. (1995) · Journal of Computational Physics · doi:10.1006/jcph.1995.1039 · Cited by 44,721
Geim, A. K., & Novoselov, K. S. (2007) · Nature Materials · doi:10.1038/nmat1849 · Cited by 39,979
Efficient pseudopotentials for plane-wave calculations
Troullier, N., & Martins, J. L. (1991) · Physical Review B · doi:10.1103/physrevb.43.1993 · Cited by 16,148
Radisavljevic, B., Radenovic, A., Brivio, J., Giacometti, V., & Kis, A. (2011) · Nature Nanotechnology · doi:10.1038/nnano.2010.279 · Cited by 14,939
The SIESTA method for ab initio order-N materials simulation
Soler, J. M., Artacho, E., Gale, J. D., García, A., Junquera, J., Ordejón, P., & Sánchez-Portal, D. (2002) · Journal of Physics: Condensed Matter · doi:10.1088/0953-8984/14/11/302 · Cited by 12,218
A reactive potential for hydrocarbons with intermolecular interactions
Stuart, S. J., Tutein, A. B., & Harrison, J. A. (2000) · The Journal of Chemical Physics · doi:10.1063/1.481208 · Cited by 4,436
The potential and challenges of nanopore sequencing
Branton, D., Deamer, D. W., Marziali, A., Bayley, H., Benner, S. A., Butler, T., Di Ventra, M., Garaj, S., Hibbs, A., Huang, X., et al. (2008) · Nature Biotechnology · doi:10.1038/nbt.1495 · Cited by 2,534
Dekker, C. (2007) · Nature Nanotechnology · doi:10.1038/nnano.2007.27 · Cited by 1,933
Kokalj, A. (2003) · Computational Materials Science · doi:10.1016/s0927-0256(03)00104-6 · Cited by 1,916
Nanopore sensors for nucleic acid analysis
Venkatesan, B. M., & Bashir, R. (2011) · Nature Nanotechnology · doi:10.1038/nnano.2011.129 · Cited by 1,302
DNA Translocation through Graphene Nanopores
Schneider, G. F., Kowalczyk, S. W., Calado, V. E., Pandraud, G., Zandbergen, H. W., Vandersypen, L. M. K., & Dekker, C. (2010) · Nano Letters · doi:10.1021/nl102069z · Cited by 1,056
Rapid nanopore discrimination between single polynucleotide molecules
Meller, A., Nivon, L., Brandin, E., Golovchenko, J., & Branton, D. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.3.1079 · Cited by 937
DNA molecules and configurations in a solid-state nanopore microscope
Li, J., Gershow, M., Stein, D., Brandin, E., & Golovchenko, J. A. (2003) · Nature Materials · doi:10.1038/nmat965 · Cited by 936
MacKerell, A. D., & Banavali, N. K. (2000) · Journal of Computational Chemistry · doi:10.1002/(sici)1096-987x(20000130)21:2<105::aid-jcc3>3.0.co;2-p · Cited by 751
Sequence-Specific Label-Free DNA Sensors Based on Silicon Nanowires
Li, Z., Chen, Y., Li, X., Kamins, T. I., Nauka, K., & Williams, R. S. (2004) · Nano Letters · doi:10.1021/nl034958e · Cited by 706
Fast DNA sequencing with a graphene-based nanochannel device
Min, S. K., Kim, W. Y., Cho, Y., & Kim, K. S. (2011) · Nature Nanotechnology · doi:10.1038/nnano.2010.283 · Cited by 576
Characterization of Nucleic Acids by Nanopore Analysis
Deamer, D. W., & Branton, D. (2002) · Accounts of Chemical Research · doi:10.1021/ar000138m · Cited by 500
Atomically Thin Molybdenum Disulfide Nanopores with High Sensitivity for DNA Translocation
Liu, K., Feng, J., Kis, A., & Radenovic, A. (2014) · ACS Nano · doi:10.1021/nn406102h · Cited by 464
Electronic detection of DNA by its intrinsic molecular charge
Fritz, J., Cooper, E. B., Gaudet, S., Sorger, P. K., & Manalis, S. R. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.232276699 · Cited by 443
Identifying single nucleotides by tunnelling current
Tsutsui, M., Taniguchi, M., Yokota, K., & Kawai, T. (2010) · Nature Nanotechnology · doi:10.1038/nnano.2010.42 · Cited by 420
Solid-state nanopore channels with DNA selectivity
Iqbal, S. M., Akin, D., & Bashir, R. (2007) · Nature Nanotechnology · doi:10.1038/nnano.2007.78 · Cited by 408
Detecting the translocation of DNA through a nanopore using graphene nanoribbons
Traversi, F., Raillon, C., Benameur, S. M., Liu, K., Khlybov, S., Tosun, M., Krasnozhon, D., Kis, A., & Radenovic, A. (2013) · Nature Nanotechnology · doi:10.1038/nnano.2013.240 · Cited by 399
Microscopic Kinetics of DNA Translocation through Synthetic Nanopores
Aksimentiev, A., Heng, J. B., Timp, G., & Schulten, K. (2004) · Biophysical Journal · doi:10.1529/biophysj.104.042960 · Cited by 376
Noise in solid-state nanopores
Smeets, R. M. M., Keyser, U. F., Dekker, N. H., & Dekker, C. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0705349105 · Cited by 374
Analysis of graphene nanoribbons as a channel material for field-effect transistors
Obradovic, B., Kotlyar, R., Heinz, F., Matagne, P., Rakshit, T., Giles, M. D., Stettler, M. A., & Nikonov, D. E. (2006) · Applied Physics Letters · doi:10.1063/1.2191420 · Cited by 357
Assessing Graphene Nanopores for Sequencing DNA
Wells, D. B., Belkin, M., Comer, J., & Aksimentiev, A. (2012) · Nano Letters · doi:10.1021/nl301655d · Cited by 286
Kou, L., Tang, C., Zhang, Y., Heine, T., Chen, C., & Frauenheim, T. (2012) · The Journal of Physical Chemistry Letters · doi:10.1021/jz301339e · Cited by 248
Saha, K. K., Drndić, M., & Nikolić, B. K. (2012) · Nano Letters · doi:10.1021/nl202870y · Cited by 221
Computational Investigation of DNA Detection Using Graphene Nanopores
Sathe, C., Zou, X., Leburton, J.-P., & Schulten, K. (2011) · ACS Nano · doi:10.1021/nn202989w · Cited by 201
Electric Field Effects on Armchair MoS2 Nanoribbons
Dolui, K., Pemmaraju, C. D., & Sanvito, S. (2012) · ACS Nano · doi:10.1021/nn301505x · Cited by 201
The Electromechanics of DNA in a Synthetic Nanopore
Heng, J. B., Aksimentiev, A., Ho, C., Marks, P., Grinkova, Y. V., Sligar, S., Schulten, K., & Timp, G. (2006) · Biophysical Journal · doi:10.1529/biophysj.105.070672 · Cited by 191
Transverse Conductance of DNA Nucleotides in a Graphene Nanogap from First Principles
Prasongkit, J., Grigoriev, A., Pathak, B., Ahuja, R., & Scheicher, R. H. (2011) · Nano Letters · doi:10.1021/nl200147x · Cited by 187
Stewart, J. A., & Spearot, D. E. (2013) · Modelling and Simulation in Materials Science and Engineering · doi:10.1088/0965-0393/21/4/045003 · Cited by 171
The Role of External Defects in Chemical Sensing of Graphene Field-Effect Transistors
Kumar, B., Min, K., Bashirzadeh, M., Farimani, A. B., Bae, M., Estrada, D., Kim, Y. D., Yasaei, P., Park, Y. D., Pop, E., et al. (2013) · Nano Letters · doi:10.1021/nl304734g · Cited by 143
Self-citationPhysisorption of nucleobases on graphene: a comparative van der Waals study
Le, D., Kara, A., Schröder, E., Hyldgaard, P., & Rahman, T. S. (2012) · Journal of Physics Condensed Matter · doi:10.1088/0953-8984/24/42/424210 · Cited by 130
Origins and Consequences of Velocity Fluctuations during DNA Passage through a Nanopore
Lu, B., Albertorio, F., Hoogerheide, D. P., & Golovchenko, J. A. (2011) · Biophysical Journal · doi:10.1016/j.bpj.2011.05.034 · Cited by 124
Zhou, Y., Yang, P. X., Zu, H.-Y., Gao, F., & Zu, X. (2013) · Physical Chemistry Chemical Physics · doi:10.1039/c3cp50381j · Cited by 117
DNA translocation through an array of kinked nanopores
Chen, Z., Jiang, Y., Dunphy, D. R., Adams, D. P., Hodges, C., Liu, N., Zhang, N., Xomeritakis, G., Jin, X., Aluru, N. R., et al. (2010) · Nature Materials · doi:10.1038/nmat2805 · Cited by 116
Self-citationElectrochemistry at the Edge of a Single Graphene Layer in a Nanopore
Banerjee, S., Shim, J., Rivera, J. A., Jin, X., Estrada, D., Solovyeva, V., You, X., Pak, J. J., Pop, E., Aluru, N. R., et al. (2012) · ACS Nano · doi:10.1021/nn305400n · Cited by 112
Self-citationTranslocating Kilobase RNA through the Staphylococcal α-Hemolysin Nanopore
Cracknell, J. A., Japrung, D., & Bayley, H. (2013) · Nano Letters · doi:10.1021/nl400560r · Cited by 55
Transverse Field Effects on DNA-Sized Particle Dynamics
Tsutsui, M., Taniguchi, M., & Kawai, T. (2009) · Nano Letters · doi:10.1021/nl900177q · Cited by 30
Cited by
Recent development of two-dimensional transition metal dichalcogenides and their applications
Choi, W., Choudhary, N., Han, G. H., Park, J., Akinwande, D., & Lee, Y. H. (2017) · Materials Today · doi:10.1016/j.mattod.2016.10.002 · Cited by 2,769
Single-layer MoS2 nanopores as nanopower generators
Feng, J., Graf, M., Liu, K., Ovchinnikov, D., Dumcenco, D., Heiranian, M., Nandigana, V., Aluru, N. R., Kis, A., & Radenovic, A. (2016) · Nature · doi:10.1038/nature18593 · Cited by 1,239
Self-citationIdentification of single nucleotides in MoS2 nanopores
Feng, J., Liu, K., Bulushev, R. D., Khlybov, S., Dumcenco, D., Kis, A., & Radenovic, A. (2015) · Nature Nanotechnology · doi:10.1038/nnano.2015.219 · Cited by 512
Integrating Artificial Intelligence and Nanotechnology for Precision Cancer Medicine
Adir, O., Poley, M., Chen, G., Froim, S., Krinsky, N., Shklover, J., Shainsky‐Roitman, J., Lammers, T., & Schroeder, A. (2020) · Advanced Materials · doi:10.1002/adma.201901989 · Cited by 496
2D materials as an emerging platform for nanopore-based power generation
Macha, M., Marion, S., Nandigana, V. V. R., & Radenovic, A. (2019) · Nature Reviews Materials · doi:10.1038/s41578-019-0126-z · Cited by 426
Metadata
- Authors
- Farimani, A. B., Min, K., & Aluru, N. R.
- Venue
- ACS Nano
- Publisher
- American Chemical Society (ACS)
- Published
- 2014-07-15
- Volume
- 8
- Issue
- 8
- Pages
- 7914-7922
- ISSN
- 1936-0851 (ISSN-L)
- 1936-086X
- OpenAlex
- W2319363320
- Cited by
- 355
- References
- 43
- FWCI
- 18.04
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
