Protein Carbonylation in a Murine Model for Early Alcoholic Liver Disease
Open accessAbstract
Hepatic oxidative stress and subsequent lipid peroxidation are well-recognized consequences of sustained ethanol consumption. The covalent adduction of nucleophilic amino acid side-chains by lipid electrophiles is significantly increased in patients with alcoholic liver disease (ALD); a global assessment of in vivo protein targets and the consequences of these modifications, however, has not been conducted. In this article, we describe the identification of novel protein targets for covalent adduction in a 6-week murine model for ALD. Ethanol-fed mice displayed a 2-fold increase in hepatic TBARS, while immunohistochemical analysis for the reactive aldehydes 4-hydroxynonenal (4-HNE), 4-oxononenal (4-ONE), acrolein (ACR), and malondialdehyde (MDA) revealed a marked increase in the staining of modified proteins in the ethanol-treated mice. Increased protein carbonyl content was confirmed utilizing subcellular fractionation of liver homogenates followed by biotin-tagging through hydrazide chemistry, where approximately a 2-fold increase in modified proteins was observed in microsomal and cytosolic fractions. To determine targets of protein carbonylation, a secondary hydrazide method coupled to a highly sensitive 2-dimensional liquid chromatography tandem mass spectrometry (2D LC-MS/MS or MuDPIT) technique was utilized. Our results have identified 414 protein targets for modification by reactive aldehydes in ALD. The presence of novel in vivo sites of protein modification by 4-HNE (2), 4-ONE (4) and ACR (2) was also confirmed in our data set. While the precise impact of protein carbonylation in ALD remains unknown, a bioinformatic analysis of the data set has revealed key pathways associated with disease progression, including fatty acid metabolism, drug metabolism, oxidative phosphorylation, and the TCA cycle. These data suggest a major role for aldehyde adduction in the pathogenesis of ALD.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In hepatic Kupffer cells, 4-HNE adducts are present and activate infiltration of neutrophils into the liver, leading to activation of HSCs and an inflammatory cytokine response; these findings indicate a contributing role of MAA and 4-HNE adducts in promoting the hepatic immune response associated with ALD development.
“In hepatic Kupffer cells, 4-HNE adducts are also present and activate the infiltration of neutrophils into the liver, leading to the activation of HSCs and an inflammatory cytokine response226–228.”
From Advanced glycation end products (AGEs) and other adducts in aging-related diseases and alcohol-mediated tissue injury (2021) · cites this paper as [227]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
Huang, D. W., Sherman, B. T., & Lempicki, R. A. (2009) · Nature Protocols · doi:10.1038/nprot.2008.211 · Cited by 35,890 · see citing works
Chemistry and biochemistry of 4-hydroxynonenal, malonaldehyde and related aldehydes
Esterbauer, H., Schaur, R. J., & Zollner, H. (1991) · Free Radical Biology and Medicine · doi:10.1016/0891-5849(91)90192-6 · Cited by 6,672 · see citing works
Keller, A., Nesvizhskii, A., Kolker, E., & Aebersold, R. (2002) · Analytical Chemistry · doi:10.1021/ac025747h · Cited by 4,970 · see citing works
A statistical model for identifying proteins by tandem mass spectrometry.
Nesvizhskii, A., Keller, A., Kolker, E., & Aebersold, R. (2003) · Analytical Chemistry · doi:10.1021/ac0341261 · Cited by 4,902 · see citing works
Cytoscape 2.8: new features for data integration and network visualization
Smoot, M. E., Ono, K., Ruscheinski, J., Wang, P., & Ideker, T. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq675 · Cited by 4,770 · see citing works
Alcohol, oxidative stress and free radical damage
Albano, E. (2006) · Proceedings of The Nutrition Society · doi:10.1079/pns2006496 · Cited by 1,216 · see citing works
Endoplasmic reticulum stress in liver disease
Malhi, H., & Kaufman, R. J. (2010) · Journal of Hepatology · doi:10.1016/j.jhep.2010.11.005 · Cited by 1,178 · see citing works
Protein carbonylation in human diseases
Dalle-Donne, I., Giustarini, D., Colombo, R., Rossi, R., & Milzani, A. (2003) · Trends in Molecular Medicine · doi:10.1016/s1471-4914(03)00031-5 · Cited by 961 · see citing works
Role of oxidative stress in alcohol-induced liver injury
Cederbaum, A. I., Lu, Y., & Wu, D. (2009) · Archives of Toxicology · doi:10.1007/s00204-009-0432-0 · Cited by 600 · see citing works
Role and regulation of the ER chaperone BiP
Gething, M.-J. H. (1999) · Seminars in Cell and Developmental Biology · doi:10.1006/scdb.1999.0318 · Cited by 557 · see citing works
Ji, C., & Kaplowitz, N. (2003) · Gastroenterology · doi:10.1016/s0016-5085(03)00276-2 · Cited by 539 · see citing works
Oxidative Stress and Alcoholic Liver Disease
Wu, D., & Cederbaum, A. (2009) · Seminars in Liver Disease · doi:10.1055/s-0029-1214370 · Cited by 342 · see citing works
Relationships between nutrition, alcohol use, and liver disease.
Lieber, C. S. (2003) · PubMed · Cited by 339 · see citing works
Zhang, D., Liu, Z.-X., Choi, C. S., Tian, L., Kibbey, R., Dong, J., Cline, G. W., Wood, P. A., & Shulman, G. I. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0707060104 · Cited by 291 · see citing works
LoPachin, R. M., Gavin, T., Petersen, D. R., & Barber, D. S. (2009) · Chemical Research in Toxicology · doi:10.1021/tx900147g · Cited by 263 · see citing works
Self-citationCarbonylation of Adipose Proteins in Obesity and Insulin Resistance
Grimsrud, P. A., Picklo, M. J., Griffin, T. J., & Bernlohr, D. (2007) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m600120-mcp200 · Cited by 249 · see citing works
Ji, C., Chan, C., & Kaplowitz, N. (2006) · Journal of Hepatology · doi:10.1016/j.jhep.2006.05.009 · Cited by 246 · see citing works
Systems Analysis of Protein Modification and Cellular Responses Induced by Electrophile Stress
Jacobs, A. T., & Marnett, L. J. (2010) · Accounts of Chemical Research · doi:10.1021/ar900286y · Cited by 233 · see citing works
Shotgun proteomics: tools for the analysis of complex biological systems.
Wu, C. C., & MacCoss, M. J. (2002) · PubMed · Cited by 226 · see citing works
Hyperhomocysteinemia, endoplasmic reticulum stress, and alcoholic liver injury
Ji, C. (2004) · World Journal of Gastroenterology · doi:10.3748/wjg.v10.i12.1699 · Cited by 200 · see citing works
Role of CHOP in Hepatic Apoptosis in the Murine Model of Intragastric Ethanol Feeding
Ji, C., Mehrian‐Shai, R., Chan, C., Hsu, Y., & Kaplowitz, N. (2005) · Alcoholism Clinical and Experimental Research · doi:10.1097/01.alc.0000174691.03751.11 · Cited by 189 · see citing works
Carbone, D. L., Doorn, J. A., Kiebler, Z., Ickes, B. R., & Petersen, D. R. (2005) · Journal of Pharmacology and Experimental Therapeutics · doi:10.1124/jpet.105.088088 · Cited by 175 · see citing works
Self-citationOverview of lipid peroxidation products and hepatic protein modification in alcoholic liver disease
McCullough, R. L., Galligan, J. J., Stewart, B. J., & Petersen, D. R. (2011) · Chemico-Biological Interactions · doi:10.1016/j.cbi.2011.02.021 · Cited by 154 · see citing works
Self-citationEndoplasmic Reticulum Stress and Liver Injury
Kaplowitz, N., Than, T. A., Shinohara, M., & Ji, C. (2007) · Seminars in Liver Disease · doi:10.1055/s-2007-991513 · Cited by 154 · see citing works
Cysteine Modification by Lipid Peroxidation Products Inhibits Protein Disulfide Isomerase
Carbone, D. L., Doorn, J. A., Kiebler, Z., & Petersen, D. R. (2005) · Chemical Research in Toxicology · doi:10.1021/tx050078z · Cited by 148 · see citing works
Self-citationGlobal Analysis of Protein Damage by the Lipid Electrophile 4-Hydroxy-2-nonenal
Codreanu, S. G., Zhang, B., Sobecki, S. M., Billheimer, D. D., & Liebler, D. C. (2008) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m800070-mcp200 · Cited by 146 · see citing works
Rules Governing Selective Protein Carbonylation
Maisonneuve, E., Ducret, A., Khoueiry, P., Lignon, S., Longhi, S., Talla, E., & Dukan, S. (2009) · PLoS ONE · doi:10.1371/journal.pone.0007269 · Cited by 145 · see citing works
Lipid peroxidation contributes to immune reactions associated with alcoholic liver disease
Mottaran, E., Stewart, S. F., Rolla, R., Vay, D., Cipriani, V., Moretti, M., Vidali, M., Sartori, M., Rigamonti, C., Day, C. P., et al. (2002) · Free Radical Biology and Medicine · doi:10.1016/s0891-5849(01)00757-2 · Cited by 145 · see citing works
Nagy, L. E. (2004) · Annual Review of Nutrition · doi:10.1146/annurev.nutr.24.012003.132258 · Cited by 145 · see citing works
Advances in alcoholic liver disease
Arteel, G. E., Marsano, L. S., Mendez, C. M., Bentley, F. R., & McClain, C. J. (2003) · Best Practice & Research Clinical Gastroenterology · doi:10.1016/s1521-6918(03)00053-2 · Cited by 142 · see citing works
Exploring the Biology of Lipid Peroxidation-Derived Protein Carbonylation
Fritz, K. S., & Petersen, D. R. (2011) · Chemical Research in Toxicology · doi:10.1021/tx200169n · Cited by 129 · see citing works
Self-citation4-hydroxynonenal inhibits SIRT3 via thiol-specific modification
Fritz, K. S., Galligan, J. J., Smathers, R. L., Roede, J. R., Shearn, C. T., Reigan, P., & Petersen, D. R. (2011) · Chemical Research in Toxicology · doi:10.1021/tx100355a · Cited by 127 · see citing works
Self-citationNutritional and metabolic effects of alcoholism: their relationship with alcoholic liver disease
Bunout, D. C. (1999) · Nutrition · doi:10.1016/s0899-9007(99)00090-8 · Cited by 91 · see citing works
Sampey, B. P., Stewart, B. J., & Petersen, D. R. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m610602200 · Cited by 64 · see citing works
Self-citationSampey, B. P., Korourian, S., Ronis, M. J. J., Badger, T. M., & Petersen, D. R. (2003) · Alcoholism Clinical and Experimental Research · doi:10.1111/j.1530-0277.2003.tb04430.x · Cited by 64 · see citing works
Self-citationChavez, J. D., Wu, J., Bisson, W. H., & Maier, C. S. (2011) · Journal of Proteomics · doi:10.1016/j.jprot.2011.03.031 · Cited by 60 · see citing works
Biomedical Discovery Acceleration, with Applications to Craniofacial Development
Leach, S. M., Tipney, H., Feng, W., Baumgartner, W. A., Kasliwal, P., Schuyler, R. P., Williams, T., Spritz, R. A., & Hunter, L. (2009) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000215 · Cited by 59 · see citing works
Self-citationLiver Proteome Analysis in a Rodent Model of Alcoholic Steatosis
Newton, B. W., Russell, W. K., Russell, D. H., Ramaiah, S. K., & Jayaraman, A. (2009) · Journal of Proteome Research · doi:10.1021/pr800905w · Cited by 58 · see citing works
Roede, J. R., Carbone, D. L., Doorn, J. A., Kirichenko, O. V., Reigan, P., & Petersen, D. R. (2008) · Chemical Research in Toxicology · doi:10.1021/tx800244u · Cited by 50 · see citing works
Self-citationDecreased expression of peroxiredoxin 6 in a mouse model of ethanol consumption
Roede, J. R., Stewart, B. J., & Petersen, D. R. (2008) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2008.08.032 · Cited by 43 · see citing works
Self-citationOxidative stress induced carbonylation in human plasma
Madian, A. G., Diaz-Maldonado, N., Gao, Q., & Regnier, F. E. (2011) · Journal of Proteomics · doi:10.1016/j.jprot.2011.07.014 · Cited by 43 · see citing works
Guo, J., & Prókai, L. (2011) · Journal of Proteomics · doi:10.1016/j.jprot.2011.07.013 · Cited by 36 · see citing works
Alcoholic Liver Disease: From Pathophysiology to Therapy
Seitz, H. K., Lieber, C. S., Stickel, F., Salaspuro, M. P., SCHLEMMER, H., & Horie, Y. (2005) · Alcoholism Clinical and Experimental Research · doi:10.1097/01.alc.0000171896.37022.f7 · Cited by 29 · see citing works
Tipney, H., Leach, S. M., Feng, W., et al. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-s2-s12 · Cited by 13 · see citing works
Profiling Impaired Hepatic Endoplasmic Reticulum Glycosylation as a Consequence of Ethanol Ingestion
Galligan, J. J., Fritz, K. S., Tipney, H., McCullough, R. L., Roede, J. R., Shearn, C. T., Hunter, L., & Petersen, D. R. (2011) · Journal of Proteome Research · doi:10.1021/pr101101s · Cited by 12 · see citing works
Self-citation
Flagged first, then by citations
Cited by
Sorted by citations
Rungratanawanich, W., Qu, Y., Wang, X., Essa, M. M., & Song, B.-J. (2021) · Experimental & Molecular Medicine · doi:10.1038/s12276-021-00561-7 · Cited by 411 · see citing works
Song, B.-J., Akbar, M., Abdelmegeed, M. A., Byun, K., Lee, B., Yoon, S. K., & Hardwick, J. P. (2014) · Redox Biology · doi:10.1016/j.redox.2014.10.004 · Cited by 123 · see citing works
Shearn, C. T., Backos, D. S., Orlicky, D. J., Smathers-McCullough, R. L., & Petersen, D. R. (2014) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.543942 · Cited by 57 · see citing works
Self-citationGalligan, J. J., Fritz, K. S., Backos, D. S., Shearn, C. T., Smathers, R. L., Jiang, H., MacLean, K. N., Reigan, P. R., & Petersen, D. R. (2014) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2014.06.002 · Cited by 46 · see citing works
Self-citation
- Authors
- Galligan, J. J., Smathers, R. L., Fritz, K. S., Epperson, L. E., Hunter, L. E., & Petersen, D. R.
- Affiliations
- University of Colorado Denver (US)
- Molecular Toxicology and Environmental Health Sciences Program, Department of Pharmaceutical Sciences, University of Colorado Denver, Aurora, Colorado, United States
- Corresponding author
- Petersen, Dennis R.
- Venue
- Chemical Research in Toxicology
- Publisher
- American Chemical Society (ACS)
- Published
- 2012-05-01
- Volume
- 25
- Issue
- 5
- Pages
- 1012-1021
- ISSN
- 0893-228X (ISSN-L)
- 1520-5010
- PMC
- PMC3423195
- OpenAlex
- W2091643856
- Cited by
- 74
- References
- 45
- Citations by year
- 2026: 1 · 2025: 1 · 2024: 1 · 2023: 4 · 2022: 1 · 2021: 2 · 2020: 6 · 2019: 11 · 2018: 7 · 2017: 7 · 2016: 6 · 2015: 10 · 2014: 10 · 2013: 2 · 2012: 5
- FWCI
- 6.16
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Chemical Research in Toxicology (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health (1f31aa018606-01)
- Anschutz Medical Campus, University of Colorado
- National Institute on Alcohol Abuse and Alcoholism (F31 AA018606, F31AA018606-01, R37AA009300)
- National Institute of Diabetes and Digestive and Kidney Diseases (R01DK074487)
- Topics
- Health Sciences › Medicine › Pathology and Forensic Medicine › Alcohol Consumption and Health Effects
- Health Sciences › Medicine › Biochemistry › Antioxidant Activity and Oxidative Stress
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Redox biology and oxidative stress
- Keywords
- protein carbonylation, alcoholic liver disease, ethanol-induced liver injury, lipid peroxidation, reactive aldehydes, 4-hydroxynonenal, acrolein, malondialdehyde, MudPIT, fatty acid metabolism, drug metabolism, oxidative phosphorylation, TCA cycle, hepatic oxidative stress
- MeSH terms
- Acrolein, Ethanol, Aldehydes, Animals, Fatty Acids, Liver, Liver Diseases, Alcoholic, Male, Malondialdehyde, Mice, Inbred C57BL, Proteins, Thiobarbituric Acid Reactive Substances, Proteomics, Protein Carbonylation, Mice, Tandem Mass Spectrometry
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review