Variational Methods for Multimodal Image Matching

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Scale-space and edge detection using anisotropic diffusion

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Mean shift: a robust approach toward feature space analysis

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Multi-modal volume registration by maximization of mutual information

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MRI-PET Registration with Automated Algorithm

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Blow-up of semilinear pde’s at the critical dimension. A probabilistic approach

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Axioms and fundamental equations of image processing

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An Investigation of Smoothness Constraints for the Estimation of Displacement Vector Fields from Image Sequences

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A comparison of similarity measures for use in 2-D-3-D medical image registration

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The correlation ratio as a new similarity measure for multimodal image registration

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Nonparametric Statistics for Stochastic Processes

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Variational principles, surface evolution, PDEs, level set methods, and the stereo problem

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On the estimation of optical flow: Relations between different approaches and some new results

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The variable bandwidth mean shift and data-driven scale selection

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Nonparametric Statistics for Stochastic Processes

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Group Actions, Homeomorphisms, and Matching: A General Framework

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Diffeomorphisms Groups and Pattern Matching in Image Analysis

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Reliable Estimation of Dense Optical Flow Fields with Large Displacements

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Block Matching: A General Framework to Improve Robustness of Rigid Registration of Medical Images

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A Theoretical Framework for Convex Regularizers in PDE-Based Computation of Image Motion

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Multi-modality image registration by maximization of mutual information

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Variational Optic Flow Computation with a Spatio-Temporal Smoothness Constraint

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Computation and analysis of image motion: A synopsis of current problems and methods

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About Direct Methods

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Variational principles, surface evolution, PDE's, level set methods and the stereo problem

Faugeras, O. D., & Keriven, R. (2005) · doi:10.1109/ssbi.2002.1233990 · Cited by 248

Unwarping of unidirectionally distorted EPI images

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Flows of diffeomorphisms for multimodal image registration

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A Nonlinear Variational Problem for Image Matching

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Determination of optical flow and its discontinuities using non-linear diffusion

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Multi-modal volume registration using joint intensity distributions

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Non-rigid multimodal image registration using mutual information

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A variational approach to multi-modal image matching

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A multigrid approach for hierarchical motion estimation

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Physical model-based non-rigid registration incorporating statistical shape information

Wang, Y., & Staib, L. H. (2000) · Medical Image Analysis · doi:10.1016/s1361-8415(00)00004-9 · Cited by 102

Determining optical flow for irregular domains by minimizing quadratic functionals of a certain class

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General multimodal elastic registration based on mutual information

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Non-rigid registration of breast MR images using mutual information

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Symmetrization of the Non-rigid Registration Problem Using Inversion-Invariant Energies: Application to Multiple Sclerosis

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Multimodal Image Registration by Maximization of the Correlation Ratio

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3D non-rigid registration by gradient descent on a Gaussian-windowed similarity measure using convolutions

Cachier, P., & Pennec, X. (2002) · IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA) · doi:10.1109/mmbia.2000.852376 · Cited by 64

Towards real-time multi-modality 3-D medical image registration

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Multimodality deformable registration of pre- and intraoperative images for MRI-guided brain surgery

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Constraints for the computation of optical flow

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Variational Methods for Multimodal Image Matching

Valadez, G. H., & Faugeras, O. D. (2002) · OpenGrey (Institut de l'Information Scientifique et Technique) · Cited by 39

Clutter-free volume rendering for magnetic resonance angiography using fuzzy connectedness

Rice, B. L., & Udupa, J. K. (2000) · International Journal of Imaging Systems and Technology · doi:10.1002/(sici)1098-1098(2000)11:1 · Cited by 28

Consistent nonlinear elastic image registration

Christensen, G. E., & He, J. (2002) · IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA) · doi:10.1109/mmbia.2001.991697 · Cited by 27

Multimodal Elastic Matching of Brain Images

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Blur and Disorder

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Evaluation of control point selection in automatic, mutual information driven, 3D warping

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On div-curl regularization for motion estimation in 3-D volumetric imaging

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Well-posedness of eight problems of muld-modal statistical image-matching

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Blur and Disorder

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Well-Posedness Of Eight Problems Of Multi-Modal Statistical Image-Matching

Faugeras, O. D., Hermosillo, G., & Robotvis, P. (2001) · Cited by 3

Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain

Avants, B., Epstein, C. L., Grossman, M., & Gee, J. C. (2007) · Medical Image Analysis · doi:10.1016/j.media.2007.06.004 · Cited by 5,876

A reproducible evaluation of ANTs similarity metric performance in brain image registration

Avants, B. B., Tustison, N. J., Song, G., Cook, P. A., Klein, A., & Gee, J. C. (2011) · NeuroImage · doi:10.1016/j.neuroimage.2010.09.025 · Cited by 4,796

Diffeomorphic demons: Efficient non-parametric image registration

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Deformable medical image registration: a survey

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Medical image registration: a review

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MIND: Modality independent neighbourhood descriptor for multi-modal deformable registration

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The Insight ToolKit image registration framework

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Quicksilver: Fast predictive image registration – A deep learning approach

Yang, X., Kwitt, R., Styner, M., & Niethammer, M. (2017) · NeuroImage · doi:10.1016/j.neuroimage.2017.07.008 · Cited by 630

Fast parametric elastic image registration

Kybic, J., & Unser, M. A. (2003) · IEEE Transactions on Image Processing · doi:10.1109/tip.2003.813139 · Cited by 473

Medical image registration using mutual information

Maes, F., Vandermeulen, D., & Suetens, P. (2003) · Proceedings of the IEEE · doi:10.1109/jproc.2003.817864 · Cited by 436

Dense image registration through MRFs and efficient linear programming

Glocker, B., Nikos Komodakis, A., Tziritas, G., Navab, N., & Nikos Paragios, A. (2008) · Medical Image Analysis · doi:10.1016/j.media.2008.03.006 · Cited by 428

Automatic segmentation of the prostate in 3D MR images by atlas matching using localized mutual information

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Adaptive Stochastic Gradient Descent Optimisation for Image Registration

Klein, S., Pluim, J. P. W., Staring, M., & Viergever, M. A. (2008) · International Journal of Computer Vision · doi:10.1007/s11263-008-0168-y · Cited by 387

Symmetric Log-Domain Diffeomorphic Registration: A Demons-Based Approach

Vercauteren, T. K., Pennec, X., Aymeric Perchant, B., & Ayache, N. (2008) · Lecture notes in computer science · doi:10.1007/978-3-540-85988-8_90 · Cited by 356

Unsupervised 3D End-to-End Medical Image Registration With Volume Tweening Network

Zhao, S., Lau, T., Luo, J., Chang, E., & Xu, Y. (2019) · IEEE Journal of Biomedical and Health Informatics · doi:10.1109/jbhi.2019.2951024 · Cited by 327

Multi-View Stereo Reconstruction and Scene Flow Estimation with a Global Image-Based Matching Score

Pons, J.-P., Keriven, R., & Faugeras, O. D. (2006) · International Journal of Computer Vision · doi:10.1007/s11263-006-8671-5 · Cited by 279

A viscous fluid model for multimodal non-rigid image registration using mutual information

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Brain Functional Localization: A Survey of Image Registration Techniques

Gholipour, A., Kehtarnavaz, N., Briggs, R. W., Devous, M. D., & Gopinath, K. (2007) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2007.892508 · Cited by 270

Non-local Shape Descriptor: A New Similarity Metric for Deformable Multi-modal Registration

Heinrich‬, M. P., Jenkinson, M., Bhushan, M., Matin, T., Gleeson, F. V., Brady, J. M., & Schnabel, J. A. (2011) · Lecture notes in computer science · doi:10.1007/978-3-642-23629-7_66 · Cited by 271

Deformable Medical Image Registration: Setting the State of the Art with Discrete Methods

Glocker, B., Sotiras, A., Nikos Komodakis, A., & Nikos Paragios, A. (2011) · Annual Review of Biomedical Engineering · doi:10.1146/annurev-bioeng-071910-124649 · Cited by 189

Ill-posed medicine—an introduction to image registration

Fischer, B., & Modersitzki, J. (2008) · Inverse Problems · doi:10.1088/0266-5611/24/3/034008 · Cited by 231

Structure- and motion-adaptive regularization for high accuracy optic flow

Wedel, A., Cremers, D., Pock, T., & Bischof, H. (2009) · IEEE/CVF International Conference on Computer Vision (ICCV) · doi:10.1109/iccv.2009.5459375 · Cited by 178

Numerical methods for volume preserving image registration

Haber, E., & Jan Modersitzki, C. (2004) · Inverse Problems · doi:10.1088/0266-5611/20/5/018 · Cited by 178

Whole-Body PET/MR Imaging: Quantitative Evaluation of a Novel Model-Based MR Attenuation Correction Method Including Bone

Paulus, D. H., Quick, H. H., Geppert, C., Fenchel, M., Zhan, Y., Hermosillo, G., Faul, D. D., Boada, F. E., Friedman, K. P., & Koesters, T. (2015) · Journal of Nuclear Medicine · doi:10.2967/jnumed.115.156000 · Cited by 175

Anterior Regions of Monkey Parietal Cortex Process Visual 3D Shape

Durand, J., Nelissen, K., Joly, O., Wardak, C., Todd, J. T., Norman, J. F., Janssen, P., Vanduffel, W., & Orban, G. A. (2007) · Neuron · doi:10.1016/j.neuron.2007.06.040 · Cited by 172

Combined Volumetric and Surface Registration

Postelnicu, G. M., Zöllei, L., & Fischl, B. R. (2008) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2008.2004426 · Cited by 172

The Retinotopic Organization of Primate Dorsal V4 and Surrounding Areas: A Functional Magnetic Resonance Imaging Study in Awake Monkeys

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Deformation-based mapping of volume change from serial brain MRI in the presence of local tissue contrast change

Studholme, C., Drapaca, C. S., Iordanova, B. E., & Cardenas, V. A. (2006) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2006.872745 · Cited by 164

Non-Rigid Multi-Modal Image Registration Using Cross-Cumulative Residual Entropy

Wang, F., & Vemuri, B. C. (2007) · International Journal of Computer Vision · doi:10.1007/s11263-006-0011-2 · Cited by 136

Autonomous robot calibration using vision technology

Meng, Y., & Zhuang, H. (2006) · Robotics and Computer-Integrated Manufacturing · doi:10.1016/j.rcim.2006.05.002 · Cited by 127

Polyrigid and polyaffine transformations: A novel geometrical tool to deal with non-rigid deformations – Application to the registration of histological slices

Arsigny, V., Pennec, X., & Ayache, N. (2005) · Medical Image Analysis · doi:10.1016/j.media.2005.04.001 · Cited by 121

Multi-modal image set registration and atlas formation

Lorenzen, P., Prastawa, M. W., Davis, B. C., Gerig, G., Bullitt, E., & Joshi, S. C. (2005) · Medical Image Analysis · doi:10.1016/j.media.2005.03.002 · Cited by 120

Quantitative assessment of small bowel motility by nonrigid registration of dynamic MR images

Odille, F., Menys, A., Ahmed, A., Punwani, S., Taylor, S. A., & Atkinson, D. (2012) · Magnetic Resonance in Medicine · doi:10.1002/mrm.23298 · Cited by 115

Avoiding a replication crisis in deep-learning-based bioimage analysis

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Magnetic resonance lung function – a breakthrough for lung imaging and functional assessment? A phantom study and clinical trial

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A variational Bayes algorithm for fast and accurate multiple locus genome-wide association analysis

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Modelling Dynamic Scenes by Registering Multi-View Image Sequences

Pons, J.-P., Keriven, R., & Faugeras, O. D. (2005) · IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings - IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings · doi:10.1109/cvpr.2005.227 · Cited by 111

Multivariate Analysis of Structural and Diffusion Imaging in Traumatic Brain Injury

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Fluid Registration of Diffusion Tensor Images Using Information Theory

Chiang, M., Leow, A., Klunder, A. D., Dutton, R. A., Marina Barysheva, A., Rose, S., McMahon, K. L., de Zubicaray, G. I., Toga, A. W., & Thompson, P. M. (2008) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2007.907326 · Cited by 110

Multifield-Graphs: An Approach to Visualizing Correlations in Multifield Scalar Data

Sauber, N., Theisel, H., & Seidel, H. (2006) · IEEE Transactions on Visualization and Computer Graphics · doi:10.1109/tvcg.2006.165 · Cited by 109

Advances and Opportunities in Remote Sensing Image Geometric Registration: A systematic review of state-of-the-art approaches and future research directions

Feng, R., Shen, H., Bai, J., & Li, X. (2021) · IEEE Geoscience and Remote Sensing Magazine · doi:10.1109/mgrs.2021.3081763 · Cited by 108

Prostate biopsy tracking with deformation estimation

Baumann, M., Mozer, P., Daanen, V., & Troccaz, J. (2011) · Medical Image Analysis · doi:10.1016/j.media.2011.01.008 · Cited by 107

Nonrigid Coregistration of Diffusion Tensor Images Using a Viscous Fluid Model and Mutual Information

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Using Pulmonary Imaging to Move Chronic Obstructive Pulmonary Disease beyond FEV1

Coxson, H. O., Leipsic, J. A., Párraga, G., & Sin, D. D. (2014) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201402-0256pp · Cited by 101

A Nonrigid Registration Framework Using Spatially Encoded Mutual Information and Free-Form Deformations

Zhuang, X., Arridge, S., Hawkes, D. J., & Sebastien Ourselin, A. (2011) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2011.2150240 · Cited by 102

Construction of Bayesian deformable models via a stochastic approximation algorithm: A convergence study

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Dual-Energy Micro-CT Functional Imaging of Primary Lung Cancer in Mice Using Gold and Iodine Nanoparticle Contrast Agents: A Validation Study

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Wide-field in vivo background free imaging by selective magnetic modulation of nanodiamond fluorescence

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Estimation of slipping organ motion by registration with direction-dependent regularization

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Deformable registration for image-guided radiation therapy

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Dixon Sequence with Superimposed Model-Based Bone Compartment Provides Highly Accurate PET/MR Attenuation Correction of the Brain

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Surface fluid registration of conformal representation: Application to detect disease burden and genetic influence on hippocampus

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Piecewise-diffeomorphic image registration: Application to the motion estimation between 3D CT lung images with sliding conditions

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Multi-modal and Multi-spectral Registration for Natural Images

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Non-rigid registration using free-form deformations

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Active Contours Based Segmentation and Lesion Periphery Analysis for Characterization of Skin Lesions in Dermoscopy Images

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Grid powered nonlinear image registration with locally adaptive regularization

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An implicit sliding-motion preserving regularisation via bilateral filtering for deformable image registration

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Registration of 4D Cardiac CT Sequences Under Trajectory Constraints With Multichannel Diffeomorphic Demons

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Constructing Diffeomorphic Representations for the Groupwise Analysis of Nonrigid Registrations of Medical Images

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Metric Learning for Image Registration

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Visual tracking using the sum of conditional variance

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Dual-Energy Micro-Computed Tomography Imaging of Radiation-Induced Vascular Changes in Primary Mouse Sarcomas

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Reconstruction of High-Resolution Tongue Volumes From MRI

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Segmentation of kidneys using a new active shape model generation technique based on non-rigid image registration

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Nonrigid Registration of Joint Histograms for Intensity Standardization in Magnetic Resonance Imaging

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Multimodal Stereo Vision System: 3D Data Extraction and Algorithm Evaluation

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Simultaneous Registration of Multiple Images: Similarity Metrics and Efficient Optimization

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Combining Registration and Minimum Surfaces for the Segmentation of the Left Ventricle in Cardiac Cine MR Images

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FLIRT: A Flexible Image Registration Toolbox

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Cardiac C-Arm CT: A Unified Framework for Motion Estimation and Dynamic CT

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A non-rigid registration approach for quantifying myocardial contraction in tagged MRI using generalized information measures

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Inter and Intra-modal Deformable Registration: Continuous Deformations Meet Efficient Optimal Linear Programming

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Efficient symmetric and inverse-consistent deformable registration through interleaved optimization

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Multivariate Normalization with Symmetric Diffeomorphisms for Multivariate Studies

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Hybrid Feature-Based Diffeomorphic Registration for Tumor Tracking in 2-D Liver Ultrasound Images

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Multimodal Image Alignment Through a Multiscale Chain of Neural Networks with Application to Remote Sensing

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Variable Interactions in Query-Driven Visualization

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Symmetric Diffeomorphic Image Registration: Evaluating Automated Labeling of Elderly and Neurodegenerative Cortex and Frontal Lobe

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Automatic elastic image registration by interpolation of 3D rotations and translations from discrete rigid-body transformations

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Using prior shape and intensity profile in medical image segmentation

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Fast contour propagation for MR‐guided prostate radiotherapy using convolutional neural networks

Eppenhof, K. A. J., Maspero, M., Savenije, M. H. F., de Boer, J. C. J., van Zyp, J. R. N. V. D. V., Raaymakers, B. W., Raaijmakers, A. J. E., Veta, M., van den Berg, C. A. T., & Pluim, J. P. W. (2019) · Medical Physics · doi:10.1002/mp.13994 · Cited by 46

A Coupled Minimization Problem for Medical Image Segmentation with Priors

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Vision-Based Proximity Detection in Retinal Surgery

Richa, R., Balicki, M. A., Sznitman, R., Meisner, E. M., Taylor, R. H., & Hager, G. D. (2012) · IEEE Transactions on Biomedical Engineering · doi:10.1109/tbme.2012.2202903 · Cited by 44

Age‐dependency of glycosaminoglycan content in lumbar discs: A 3t gagcEST study

Müller‐Lutz, A., Schleich, C., Pentang, G., Schmitt, B., Lanzman, R. S., Matuschke, F., Wittsack, H., & Miese, F. R. (2015) · Journal of Magnetic Resonance Imaging · doi:10.1002/jmri.24945 · Cited by 41

Illumination-robust variational optical flow using cross-correlation

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An information theoretic approach for non-rigid image registration using voxel class probabilities

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Fast Deformable Registration of 3D-Ultrasound Data Using a Variational Approach

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Automatic 3D registration of dynamic stress and rest 82Rb and flurpiridaz F 18 myocardial perfusion PET data for patient motion detection and correction

Woo, J., Tamarappoo, B. K., Dey, D., Nakazato, R., Meunier, L. L., Ramesh, A., Lazewatsky, J. L., Germano, G., Berman, D. S., & Slomka, P. J. (2011) · Medical Physics · doi:10.1118/1.3656951 · Cited by 40

A robust and interpretable deep learning framework for multi-modal registration via keypoints

Wang, A. Q., Yu, E., Dalca, A. V., & Sabuncu, M. R. (2023) · Medical Image Analysis · doi:10.1016/j.media.2023.102962 · Cited by 39

Normalized gradient fields for nonlinear motion correction of DCE-MRI time series

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Probabilistic non-linear registration with spatially adaptive regularisation

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A statistical similarity measure for non-rigid multi-modal image registration

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A Variational Approach to Multi-Modal Image Matching

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Non-rigid multimodal image registration based on local variability measures and optical flow

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Non-Rigid Multimodal Medical Image Registration Based on the Conditional Statistics of the Joint Intensity Distribution

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