Cited by 53Origins and Evolution of LifeEvolution and Genetic DynamicsRNA and protein synthesis mechanisms

The DOI matches its Crossref record; 11 of the 11 references it cites were found in a registry or an index.

Spatial Models of Prebiotic Evolution: Soup Before Pizza?

Scheuring, István, Czárán, Tamás, Szabó, Péter, Károlyi, György, Toroczkai, Zoltán·2003·Origins of life and evolution of the biosphere

Abstract

The problem of information integration and resistance to the invasion of parasitic mutants in prebiotic replicator systems is a notorious issue of research on the origin of life. Almost all theoretical studies published so far have demonstrated that some kind of spatial structure is indispensable for the persistence and/or the parasite resistance of any feasible replicator system. Based on a detailed critical survey of spatial models on prebiotic information integration, we suggest a possible scenario for replicator system evolution leading to the emergence of the first protocells capable of independent life. We show that even the spatial versions of the hypercycle model are vulnerable to selfish parasites in heterogeneous habitats. Contrary, the metabolic system remains persistent and coexistent with its parasites both on heterogeneous surfaces and in chaotically mixing flowing media. Persistent metabolic parasites can be converted to metabolic cooperators, or they can gradually obtain replicase activity. Our simulations show that, once replicase activity emerged, a gradual and simultaneous evolutionary improvement of replicase functionality (speed and fidelity) and template efficiency is possible only on a surface that constrains the mobility of macromolecule replicators. Based on the results of the models reviewed, we suggest that open chaotic flows ('soup') and surface dynamics ('pizza') both played key roles in the sequence of evolutionary events ultimately concluding in the appearance of the first living cell on Earth.

Overview

Integrity signals

Registry

Crossref · 10.1023/a:1025742505324

Cites

11 of 11 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

We couldn’t retrieve this paper’s full text, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • The dynamics are formally equivalent to those of parabolic replication, although the subexponential term in the replication dynamics follows from imperfect mixing along the fractal set and not from the self-inhibition of replicators.

    “That is, the dynamics are formally equivalent to those of parabolic replication, although the subexponential term in the replication dynamics follows from imperfect mixing along the fractal set and not from the self-inhibition of replicators [89].”
  • There is no selection in the open chaotic flow habitat, similar to parabolic replication.

    “Similar to parabolic replication, there is no selection in this habitat, so we have to assume other regions providing intense turbulent mixing where exponential dynamics still maintain selection [89].”

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 59

  1. Allee, W. C.: 1938, The Social Life of Animals, Norton, New York. · DOI
  2. Aref, H.: 1984, Stirring by Chaotic Advection, J. Fluid Mech. 143, 1–21. · DOI
  3. Aref, H., Jones, S. W., Mofina, S. and Zawadski, I.: 1989, Vortices, Kinematics and Chaos, Physica D 37, 423–440. · DOI
  4. Arístegui, J., Tett, P., Hernández-Guerra, A., Basterretxea, G., Montero, M. F., Wild, K., Sangrá, P., Hernández-León, S., Cantón, M., García-Braun, J.A., Pacheco, M. and Barton, E. D.: 1997, The Influence of Island-Generated Eddies on Chlorophyll Distribution: A Study of Mesoscale Variation Around Gran Canaria, Deep-See Research I 44, 71–96. · DOI
  5. Barton, E. D., Arístegui, J., Tett, P., Cantón, M., García-Braun, J. A., Hernández-León, S., Nykjaer, L., Almeida, C., Almunia, J., Ballesteros, S., Basterretxea, G., Escánez, J., García-Weill, L., Hernández-Guerra, A., López-Laatzen, F., Molina, R., Montero, M.F., Navarro-Pérez, E., Rodríguez, J.M., van Lenning, K., Vélez, H. and Wild, K.: 1998, The Transition Zone of the Canary Current Upwelling Region, Progress in Oceanography 41, 455–504. · DOI
  6. Boerlijst, M. C. and Hogeweg, P.: 1991, Spiral Wave Structures in Prebiotic Evolution: Hypercycles Stable Against Parasites, Physica D 48, 17–28. · DOI · Paper page
  7. Cronhjort, M. B. and Blomberg, C.: 1995, 'Hypercycles versus Parasites in a Two-Dimensional Partial Differential Equation Model, J. Theor. Biol. 169, 31–49. · DOI · Paper page
  8. Chaiken, J., Chevray, R., Tabor, M. and Tan, Q. M.: 1986, Experimental Study of Lagrangian Turbulence in a Stokes Flow, Proc. Roy. Soc. London A 408, 165–174. · DOI
  9. Czárán, T. and Szathmáry, E.: 2000, Coexistance of Replicators in Prebiotic Evolution, in Dieckmann, U., Law, R. and Metz, J. A. J. (eds), The Geometry of Ecological Interactions: Simplifying Spatial Complexity, Cambridge U.P., Cambridge.
  10. Eigen, M., Schuster, P., Gardiner, W. and Winkler-Oswatitsch R.: 1981, The Origin of Genetic Information. Sci. Am. 244(4), 78–94. · DOI
  11. Eigen, M. and Schuster, P.: 1979, The Hypercycle, Springer, Berlin. · DOI · Paper page
  12. Ekland, E. H. and Bartel, D. P.: 1996, RNA-Catalyzed RNA Polymeryzation Using Nucleoside Triphisphates, Nature 382, 373–376. · DOI · Paper page
  13. Gánti, T.: 1979, A Theory of Biochemical Supersystems and its Application to Problems of Natural and Artificial Biogenesis, Akadémiai Kiadó, Budapest and University Park Press, Baltimore.
  14. Gilbert, W.: 1986, The RNA World, Nature 319, 618. · DOI · Paper page
  15. Giona, M., Adrover, A., Muzzio, F. J., Cerbelli, S. and Alvarez, M. M.: 1999, The Geometry of Mixing in Time-periodic Chaotic Flows, I. Asymptotic Directionality in Physically Realizable Flows and Global Invariant Properties, Physica D 132, 298–324. · DOI
  16. Holm, N. G.: 1992, Marine Hydrothermal Systems and the Origin of Life, Origins Life Evol. Biosphere 22, 5–14. · DOI
  17. James, K. D. and Ellington, A. D.: 1999, The Fidelity of Template-Directed Oligonucleotide Ligation and the Inevitability of Polymerase Function, Orig. Life. Evol. Biosphere 29, 375–390. · DOI
  18. Joyce, G. F. and Orgel, L. E.: 1999, Prospects for Understanding the Origin of the RNA World, in Gesteland, R. F., Cech, T. R. and Atkins, J. F. (eds), The RNA World, pp. 49–77, Cold Spring Harbor Lab. Press, Cold Spring Harbor.
  19. Jung, C., Tél, T. and Ziemniak, E.: 1993, Application of Scattering Chaos to Particle Transport in a Hydrodynamical Flow, Chaos 3, 555–568. · DOI
  20. Károlyi, G., Péntek, Á., Scheuring, I., Tél, T. and Toroczkai, Z.: 2000, Chaotic Flow: the Physics of Species Coexistence, Proc. Nat. Acad. Sci. 97, 13661–13665. · DOI
  21. Károlyi, G., Péntek, Á., Toroczkai, Z., Tél, T. and Grebogi, C.: 1999, Chemical or Biological Activity in Open Chaotic Flows, Physical Review E 59, 5468–5481. · DOI
  22. Károlyi, G., Scheuring, I. and Czárán, T.: 2002, Metabolic Network Dynamics in Open Chaotic Flow, Chaos 12, 460–469. · DOI
  23. Károlyi, G. and Tél, T.: 1997, Chaotic Tracer Scattering and Fractal Basin Boundaries in a Blinking Vortex-Sink System, Physics Reports 290, 125–147. · DOI
  24. Kauffman, S. A.: 1986, Autocatalytic sets of proteins, J. Theor. Biol. 119, 1–24. · DOI · Paper page
  25. Koch, A. L.: 1985, Primeval Cells: Possible Energy-Generating and Cell-Division Mechanisms, J. Molec. Evol. 21, 270–277. · DOI
  26. Landweber, L. F.: 1999, Experimental RNA Evolution, Trends Ecol. Evol. 14, 353–358. · DOI
  27. Lifson, S. and Lifson, H.: 1999, Models of Prebiotic Replication: Survival of the Fittest versus Extinction of the Unfittest. J. Theor. Biol. 199, 425-433. · DOI · Paper page
  28. Maynard Smith J.: 1979, Hypercycles and the Origin of Life, Nature 20, 445–446. · DOI · Paper page
  29. Maynard Smith, J.: 1983, Models of Evolution, Proc. Roy. Soc. Lond. B 219, 315–325. · DOI · Paper page
  30. Maynard Smith, J. and Szathmáry, E.: 1995, The Major Transitions in Evolution, Freeman, Spektrum, Oxford.
  31. Metcalfe, J. and Ottino, J.M.: 1994, Autocatalytic Processes in Mixing Flows, Phys. Rev. Lett. 72, 2875–2878. · DOI
  32. Ottino, J. M.: 1989, The Kinematics of Mixing: Stretching, Chaos and Transport, Cambridge U.P., Cambridge.
  33. Ottino, J. M.: 1990, Mixing, Chaotic Advection, And Turbulence, Ann. Rev. Fluid Mech. 22, 207–253. · DOI
  34. Péntek, Á., Károlyi, G., Scheuring, I., Tél, T., Toroczkai, Z., Kadtke, J. and Grebogi, C.: 1999, Fractality, Chaos, and Reactions in Imperfectly Mixed Open Hydrodynamical Flows, Physica A 274, 120–131. · DOI
  35. Péntek, Á., Tél, T. and Toroczkai, Z.: 1995a, Chaotic Advection in the Velocity Field of Leapfrogging Vortex Pair, J. Phys. A 28, 2191–2216. · DOI
  36. Péntek, Á., Tél, T. and Toroczkai, Z.: 1995b, Fractal Tracer Patterns in Open Hydrodynamical Flows: the Case of Leapfrogging Vortex Pairs, Fractals 3, 33–53.
  37. Poole A., Jeffares, D. and Penny, D.: 1999, Early Evolution: Prokaryotes, the New Kids on the Block, BioEssays 21, 880–889. · DOI
  38. Rom-Kedar, V., Leonard, A. and Wiggins, S.: 1990, An Analytical Study of Transport, Mixing and Chaos in an Unsteady Vortical Flow, J. Fluid. Mech. 214, 347–394. · DOI
  39. Rom-Kedar, V. and Poje, A. C.: 1999, Universal Properties of Chaotic Transport in the Presence of Diffusion, Physics of Fluids 11, 2044–2057. · DOI
  40. Scheuring, I.: 2000, Avoiding Catch-22 of Early Evolution by Stepwise Increase in Copying Fidelity, Selection 13, 135–145. · DOI
  41. Scheuring, I. and Szathmáry, E.: 2001, Survival of Replicators with Parabolic Growth Tendency and Exponential Decay, J. Theor. Biol. 212, 99–105. · DOI · Paper page
  42. Shapiro, R.: 1984, The Improbability of Prebiotic Nucleid Acid Synthesis, Orig. Life Evol. Biosphere 14, 565–570. · DOI
  43. Shariff, K., Pulliam, T. H. and Ottino, J. M.: 1991, A Dynamical Systems Analysis of Kinematics in the Time-periodic Wake of a Circular Cylinder, Lect. Appl. Math. 28, 613–646.
  44. Sievert, D. and von Kiedrowski, G.: 1994, Self-replication of Complementary Nucleotide Based Oligomers, Nature 369, 221–224. · DOI · Paper page
  45. Sommerer, J. C., Ku, H.-C. and Gilreath, H. E.: 1996, Experimental Evidence for Chaotic Scattering in a FluidWake, Phys. Rev. Lett. 77, 5055–5058. · DOI
  46. Sommerer, J. C. and Ott, E.: 1993, Particles Floating on a Moving Fluid: A Dynamically Comprehensible Physical Fractal, Science 259, 335–339. · DOI
  47. Stadler, B. M. R., Stadler, P. F. and Wills P. R.: 2002, Evolution in Systems of Ligation Based Replicators, Z. Phys. Chem. 216, 21-34.
  48. Szathmáry, E.: 1989, The Integration of the Earliest Genetic Information, Trends Ecol. Evol. 4, 200–204. · DOI
  49. Tél, T.: 1990, Transient Chaos, in Hao, B.-L. (ed.), Directions in Chaos Vol. 3, pp. 149–211, World Scientific, Singapore.
  50. Tél, T., Károlyi, G., Péntek, Á., Scheuring, I., Toroczkai, Z., Grebogi, C. and Kadtke, J.: 2000, Fractality, Chaos, Reactions, and Population Dynamics in Imperfectly Mixed Open Hydrodynamical Flows, Chaos 10, 89–99. · DOI · Paper page
  51. Toffoli, T. and Margolus, N.: 1987, Cellular Automata Machines: A New Environment for Modeling, MIT Press, Cambridge, Mass. · DOI
  52. Toroczkai, Z., Károlyi, G., Péntek, Á. and Tél, T.: 2001, Autocatalytic Reactions in Systems with Hyperbolic Mixing: Exact Results for the Active Baker Map, J. Physics A 34, 5215–5235.
  53. Toroczkai, Z., Károlyi, G., Péntek, Á., Tél, T. and Grebogi, C.: 1998, Advection of Active Particles in Open Chaotic Flows, Phys. Rev. Lett. 80, 500–503. · DOI · Paper page
  54. Toroczkai, Z., Károlyi, G., Péntek, Á., Tél, T., Grebogi, C. and Yorke, J. A.: 1997, Wada Dye Boundaries in Open Hydrodynamical Flows, Physica A 239, 235–243. · DOI
  55. von Kiedrowsky, G. and Szathmáry E.: 2000, Selection versus Coexistence of Parabolic Replicators Spreading on Surfaces, Selection 13, 173–179. · DOI
  56. Wills, P. R., Kauffman, S. A. and Stadler, B. M. R.: 1998, Selection Dynamics in Autocatalytic Systems: Templates Replicating through Binary Ligation, Bull. Math. Biol. 60, 1073–1098. · DOI
  57. Wilson, D. S.: 1980, The Natural Selection of Populations and Communities, Benjamin Cummings, Menlo Park, California.
  58. Zaug, A. J. and Cech, T. R.: 1986, The Intervening Sequence RNA of Tetrahymena is an Enzyme, Science 231, 470–475. · DOI
  59. Ziemniak, E., Jung, C. and Tél, T.: 1994, Tracer Dynamics in Open Hydrodynamical Flows as Chaotic Scattering, Physica D 76, 123–146. · DOI

Cited by

Sorted by citations

Metadata

Authors
Scheuring, I., Czárán, T., Szabó, P., Károlyi, G., & Toroczkai, Z.
Affiliations
  • Eötvös Loránd University (HU)
  • International Institute for Applied Systems Analysis (AT)
  • University of Arizona (US)
  • Los Alamos National Laboratory (US)
Corresponding author
Czárán, Tamás
Venue
Origins of life and evolution of the biosphere
Published
2003-10
Volume
33
Issue
4-5
Pages
319-355
ISSN
  • 0169-6149 (ISSN-L)
  • 1573-0875
OpenAlex
W1503940664
Cited by
53
References
11
Citations by year
2024: 2 · 2023: 2 · 2022: 1 · 2021: 3 · 2020: 1 · 2018: 1 · 2017: 3 · 2016: 1 · 2015: 3 · 2014: 2 · 2013: 1 · 2012: 3
FWCI
2.31
Type
journal article
Language
en
Open access
closed
Locations
  • Origins of Life and Evolution of Biospheres (publishedVersion)
  • PubMed (publishedVersion)
  • IIASA PURE (International Institute of Applied Systems Analysis) (submittedVersion)
Funders
Hungarian Science Foundation
Topics
  • Physical Sciences › Physics and Astronomy › Astronomy and Astrophysics › Origins and Evolution of Life
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
Keywords
prebiotic evolution, origin of life, spatial structure, hypercycles, information integration, protocells, metabolic cooperation, replicase, chaotic flow, surface dynamics
MeSH terms
Origin of Life, Animals, Biological Evolution, Metabolism, Models, Theoretical, Fractals

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review