The chemical repertoire of natural ribozymes

Doudna, Jennifer A., Cech, Thomas R.·2002·Nature
DOI 10.1038/418222a

Cited by (745)

Items 701–745 of 745

  1. Decision: Computational drug discovery under RNA times — R2/PR5
    Mattia Bernetti, Riccardo Aguti, Stefano Bosio · 2022 · QRB Discovery
  2. Decision: Computational drug discovery under RNA times — R0/PR3
    Mattia Bernetti, Riccardo Aguti, Stefano Bosio · 2022 · QRB Discovery
  3. Review: Computational drug discovery under RNA times — R0/PR1
    Mattia Bernetti, Riccardo Aguti, Stefano Bosio · 2022 · QRB Discovery
  4. Review: Computational drug discovery under RNA times — R0/PR2
    Mattia Bernetti, Riccardo Aguti, Stefano Bosio · 2022 · QRB Discovery
  5. Origin of Life
    Sohan Jheeta, Elias Chatzitheodoridis · 2023 · Wiley eBooks
  6. The Much-Awaited Bridge: Connecting the Worlds of RNA Biology and Glycobiology Through the Discovery of Glycornas
    Joe Anthony Manzano, Mary Beth B. Maningas · 2023 · Acta Manilana
  7. DecoyFinder: Identification of Contaminants in Sets of Homologous RNA Sequences
    Mingyi Zhu, Jeffrey Zuber, Zhen Tan, Gaurav Sharma A, David H. Mathews · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  8. ML-Based RNA Secondary Structure Prediction Methods: A Survey
    Qi Zhao, Jingjing Chen, Zheng Zhao, Qian Mao, Haoxuan Shi, Xiaoya Fan · 2024 · AI medicine.
  9. Partition, Predict and Assemble: Targeting Long RNA Secondary Structure Prediction
    Xiaoya Fan, Yuming Cui, Zheng Zhao, Zengyou He, Qi Zhao, Zhong Wang · 2024 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
  10. A Mathematical Model for RNA 3D Structures
    Sixiang Zhang, Liming Cai · 2025 · Mathematics
  11. High-throughput experimental validation of novel hairpin ribozymes
    Kaitlyn Matteo, Eric J. Hayden · 2026 · RNA
  12. Hammerhead ribozymes directed against mRNA of an essential gene inhibit Escherichia coli growth and enhance tetracycline efficacy
    Joanna Miszkiewicz, Ksenia Maximova, Maciej Łukaszewicz, Dariusz Bartosik, Edward Darżynkiewicz, Joanna Trylska · 2025 · Frontiers in Microbiology
  13. RNA secondary structure prediction: a practical guide
    Lening Mao, David H. Mathews · 2025 · Elsevier eBooks
  14. Leveraging RNA LLMs for 3D Structure Prediction via Data Augmentation
    Sixiang Zhang, Harish Anand, Liming Cai · 2025 · Lecture notes in computer science
  15. Antisense Versus Antigene in the Computer-Aided Design of Triplex-Forming Oligonucleotides (TFO): Insights from a Dual-Method Review, Combining Bibliometric and Systematic Review
    Martha Hincapié-López, Jeison Marín, Efrén Romero-Riaño, Rafael A. Núñez-Rodríguez, Y. Vladimir Pabón-Martínez · 2025 · International Journal of Molecular Sciences
  16. The Information-Energy Phase Transition Theory: A Tiered Framework for Life's Emergence from Simple to Complex Replicators
    Syed Hassan Masoom Alam Shah · 2025 · SSRN Electronic Journal
  17. Dynamics, Degradation, and Chemical Modification of Non-Coding RNA
    John A. H. Hoerter · 2008 · Deep Blue (University of Michigan)
  18. BioGraphX-RNA: a universal physicochemical graph encoding for interpretable RNA subcellular localization prediction
    Abubakar Saeed, Waseem Abbas · 2026 · BMC Bioinformatics
  19. Exploration of Catalytic Ribonucleic Acids and Implementation of an Essential Function in Escherichia coli
    Karine Trottier · 2019 · theses.fr (ABES)
  20. Inhibition du Virus de l’Hépatite Delta par des inducteurs de la voie NFκB
    Brieux Chardès · 2019 · theses.fr (ABES)
  21. Caractérisation de la machinerie traductionnelle à l'aide de criblages à ultra haut-débit en goutelettes microfluidiques
    Natacha Dentz · 2021 · theses.fr (ABES)
  22. Alkyltransferase Ribozyme for Site‐Specific N 4 ‐Cytidine Alkylation
    Evgeniia Dorinova, Manisha B. Walunj, Claudia Höbartner · 2026 · Angewandte Chemie
  23. Development of a new class of synthetic gene circuits based on protein-protein interactions
    Lucie Troisi · 2023
  24. Development of synthetic RNA using ultrahigh-throughput microfluidic screening
    Claire Husser · 2024 · theses.fr (ABES)
  25. Deep learning methods for long RNA secondary structure prediction
    Loïc Omnes · 2025 · theses.fr (ABES)
  26. Origins of reactivity in SAM-utilizing ribozyme SAMURI-catalyzed RNA alkylation
    Julie Puyo-Fourtine, Yanan Du, Erika McCarthy, Şölen Ekesan, Darrin M. York · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  27. Reparameterization of the Amber RNA Force Field Non-Bonded Terms
    Anees Mohammed Keedakkatt Puthenpeedikakkal, Chapin E. Cavender, Louis G. Smith, Alan M. Grossfield, David H. Mathews · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  28. A Hypercycle for Ribozymes or Viroids as Origin of Life
    Karin Moelling · 2026 · Springer eBooks
  29. CoSTAR: Coarse Stem-Topology Alignment of Pseudoknotted RNA Structures by Relation-Constrained Search
    Finn Archinuk, Hosna Jabbari · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  30. Protocode mats and living membranes: A new hypothesis for the origin of the standard genetic code
    Alexander Nesterov‐Mueller, Dimitry Schmidt · 2026 · Biosystems
  31. Mapping active-site conformational ensembles along competing catalytic pathways of the hairpin ribozyme
    Sélène Forget, Guillaume Stirnemann · 2026 · Biophysical Journal
  32. Hierarchical Enzyme Classification with Integrated Sequence and Folding‑Derived Representations
    Po-Yu Liang, Wei Wang, Zeyu Wang, Jun Bai · 2026 · ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB)
  33. The RNA World and the Confluence of Organic and Inorganic Matter in the Generation, Structure, and Function of RNA
    William A. Haseltine, Roberto Patarca · 2026 · Springer eBooks
  34. Prebiotic Absolute Asymmetric Synthesis of d ‐Ribose on Wollastonite
    Wendi Zhang, Yang Gao, Jiao Wang, Quanzheng Deng, Lu Han, Wanning Zhang, Yuxi Fang · 2026 · Chirality
  35. Thermodynamic and Structural Consequences of Nucleotide Deletion in DNA/RNA Heteroduplexes
    Tomoka Akita, Taiichi Sakamoto, Elisa Tomita‐Sudo, Renshin Sano, Nae Sakimoto, Shigenori Iwai, Satoshi Obika, Takao Inoue, Junji Kawakami · 2026 · Biochemistry
  36. BindingDB Entry 50021491: RNA-Small-Molecule Interaction: Challenging the "Undruggable" Tag.
    BindingDB · 2025 · UC San Diego
  37. Ribozyme Redesign From an Existing RNA Scaffold Enables Multifunctional Hydrolysis for Molecular Release
    Jun Yan, Yuan‐Lin He, Chenxi Zhang, Sen‐Lin Ye, Xiao‐hui Li, Feng‐Tai Wu, Liang‐Liang Wang, Lin Huang, Liang Xu · 2026 · Angewandte Chemie
  38. Ribozyme Redesign From an Existing RNA Scaffold Enables Multifunctional Hydrolysis for Molecular Release
    Jun Yan, Yuan‐Lin He, Chenxi Zhang, Sen‐Lin Ye, Xiao‐hui Li, Feng‐Tai Wu, Liang‐Liang Wang, Lin Huang, Liang Xu · 2026 · Angewandte Chemie International Edition
  39. RNAi in mouse oocytes and early embryos
    Petr Svoboda · 2002 · Scholarly Commons (University of Pennsylvania)
  40. Strukturbasierte Beschreibung und Suche von RNA-Familien in genomischen Sequenzdaten
    Stefan Gräf · 2005 · Univ. Duesseldorf: Duesseldorfer Dokumenten- und Publikationsserver
  41. Discovery of a thiamin-utilizing α-keto acid decarboxylase ribozyme: Implications for RNA’s role in primordial metabolism
    Paul Cernak · 2013 · Summit (Simon Fraser University)
  42. RNA Synthetic Biology using the Hammerhead Ribozyme : Engineering of Artificial Genetic Switches
    Benedikt Klauser · 2015 · KOPS (University of Konstanz)
  43. Computational methods for understanding RNA catalysis: a molecular approach
    Brian K. Radak · 2014 · University of Minnesota Digital Conservancy (University of Minnesota)
  44. Single molecule fluorescence and force spectroscopy of hairpin ribozyme
    Michelle K. Nahas · 2006 · Illinois Digital Environment for Access to Learning and Scholarship (University of Illinois at Urbana-Champaign)
  45. Use of Hammerhead Ribozymes for Aging and Cancer
    Hiroshi Minoshima, Eigo Suyama, Renu Wadhwa, Kazunari Taira · 2003 · Springer eBooks