Cited by 31

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Complex structure of the fission yeast SREBP-SCAP binding domains reveals an oligomeric organization

Gong, Xin, Qian, Hongwu, Shao, Wei, Li, Jingxian, Wu, Jianping, Liu, Jun-Jie, Li, Wenqi, Wang, Hong-Wei, Espenshade, Peter, Yan, Nieng·2016·Cell Research

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Crossref · 10.1038/cr.2016.123

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  • SREBP-2 is synthesized as an inactive form and anchored to the ER membrane by SCAP, in a 4:4 oligomer ratio in yeast.

    “SREBP-2 is synthesized as an inactive form and anchored to the ER membrane by SREBP-cleavage activating protein (SCAP), in a 4:4 oligomer ratio in yeast68.”

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Research works printed but not linked: 38

  1. Brown MS, Goldstein JL . The SREBP pathway: regulation of cholesterol metabolism by proteolysis of a membrane-bound transcription factor. Cell 1997; 89:331–340. · DOI · Paper page
  2. Horton JD, Goldstein JL, Brown MS . SREBPs: activators of the complete program of cholesterol and fatty acid synthesis in the liver. J Clin Invest 2002; 109:1125–1131. · DOI · Paper page
  3. Sakai J, Nohturfft A, Cheng D, Ho YK, Brown MS, Goldstein JL . Identification of complexes between the COOH-terminal domains of sterol regulatory element-binding proteins (SREBPs) and SREBP cleavage-activating protein. J Biol Chem 1997; 272:20213–20221. · DOI · Paper page
  4. Hua XX, Sakai J, Ho YK, Goldstein JL, Brown MS . Hairpin orientation of sterol regulatory element-binding protein-2 in cell-membranes as determined by protease protection. J Biol Chem 1995; 270:29422–29427. · DOI
  5. Parraga A, Bellsolell L, Ferre-D'Amare AR, Burley SK . Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 angstrom resolution. Structure 1998; 6:661–672. · DOI
  6. Motamed M, Zhang YX, Wang ML, et al. Identification of luminal loop 1 of scap protein as the sterol sensor that maintains cholesterol homeostasis. J Biol Chem 2011; 286:18002–18012. · DOI
  7. Espenshade PJ, Hughes AL . Regulation of sterol synthesis in eukaryotes. Annu Rev Genet 2007; 41:401–427. · DOI · Paper page
  8. DeBose-Boyd RA, Brown MS, Li WP, Nohturfft A, Goldstein JL, Espenshade PJ . Transport-dependent proteolysis of SREBP: relocation of site-1 protease from Golgi to ER obviates the need for SREBP transport to Golgi. Cell 1999; 99:703–712. · DOI · Paper page
  9. Hughes AL, Todd BL, Espenshade PJ . SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast. Cell 2005; 120:831–842. · DOI · Paper page
  10. Todd BL, Stewart EV, Burg JS, Hughes AL, Espenshade PJ . Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast. Mol Cell Biol 2006; 26:2817–2831. · DOI · Paper page
  11. Hughes BT, Nwosu CC, Espenshade PJ . Degradation of sterol regulatory element-binding protein precursor requires the endoplasmic reticulum-associated degradation components Ubc7 and Hrd1 in fission yeast. J Biol Chem 2009; 284:20512–20521. · DOI
  12. Stewart EV, Nwosu CC, Tong ZT, et al. Yeast SREBP cleavage activation requires the Golgi Dsc E3 ligase complex. Mol Cell 2011; 42:160–171. · DOI
  13. Shao W, Espenshade PJ . Sterol regulatory element-binding protein (SREBP) cleavage regulates Golgi-to-endoplasmic reticulum recycling of SREBP cleavage-activating protein (SCAP). J Biol Chem 2014; 289:7547–7557. · DOI · Paper page
  14. Shao W, Espenshade PJ . Expanding roles for SREBP in metabolism. Cell Metab 2012; 16:414–419. · DOI
  15. Feng L, Yan H, Wu Z, et al. Structure of a site-2 protease family intramembrane metalloprotease. Science 2007; 318:1608–1612. · DOI
  16. Ren R, Zhou X, He Y, et al. PROTEIN STRUCTURE. Crystal structure of a mycobacterial Insig homolog provides insight into how these sensors monitor sterol levels. Science 2015; 349:187–191. · DOI
  17. Gong X, Li J, Shao W, et al. Structure of the WD40 domain of SCAP from fission yeast reveals the molecular basis for SREBP recognition. Cell Res 2015; 25:401–411. · DOI
  18. Kastner B, Fischer N, Golas MM, et al. GraFix: sample preparation for single-particle electron cryomicroscopy. Nat Methods 2008; 5:53–55. · DOI
  19. Radhakrishnan A, Sun LP, Kwon HJ, Brown MS, Goldstein JL . Direct binding of cholesterol to the purified membrane region of SCAP: mechanism for a sterol-sensing domain. Mol Cell 2004; 15:259–268. · DOI · Paper page
  20. Atchley WR, Fitch WM . A natural classification of the basic helix-loop-helix class of transcription factors. Proc Natl Acad Sci USA 1997; 94:5172–5176. · DOI
  21. Grandori C, Cowley SM, James LP, Eisenman RN . The Myc/Max/Mad network and the transcriptional control of cell behavior. Annu Rev Cell Dev Biol 2000; 16:653–699. · DOI · Paper page
  22. Datta S, Osborne TF . Activation domains from both monomers contribute to transcriptional stimulation by sterol regulatory element-binding protein dimers. J Biol Chem 2005; 280:3338–3345. · DOI
  23. Sakai J, Rawson RB, Espenshade PJ, et al. Molecular identification of the sterol-regulated luminal protease that cleaves SREBPs and controls lipid composition of animal cells. Mol Cell 1998; 2:505–514. · DOI
  24. Kim J, Ha HJ, Kim S, et al. Identification of Rbd2 as a candidate protease for sterol regulatory element binding protein (SREBP) cleavage in fission yeast. Biochem Biophys Res Commun 2015; 468:606–610. · DOI
  25. Bat-Ochir C, Kwak JY, Koh SK, et al. The signal peptide peptidase SppA is involved in sterol regulatory element-binding protein cleavage and hypoxia adaptation in Aspergillus nidulans. Mol Microbiol 2016; 100:635–655. · DOI · Paper page
  26. Dhingra S, Kowlaski CH, Thammahong A, Beattie SR, Bultman KM, Cramer RA . RbdB, a rhomboid protease critical for SREBP activation and virulence in Aspergillus fumigatus. mSphere 2016; 1:pii: e00035-16. · DOI
  27. Schuck P . On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation. Anal Biochem 2003; 320:104–124. · DOI
  28. Otwinowski Z, Minor W . Processing of X-ray diffraction data collected in oscillation mode. Methods in Enzymology 1997; 276:307–326. · DOI · Paper page
  29. Collaborative Computational Project, Number 4. The Ccp4 Suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 1994; 50:760–763. · DOI
  30. Emsley P, Cowtan K . Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 2004; 60:2126–2132. · DOI · Paper page
  31. Mccoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ . Phaser crystallographic software. J Appl Crystallogr 2007; 40:658–674. · DOI · Paper page
  32. Adams PD, Grosse-Kunstleve RW, Hung LW, et al. PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr D Biol Crystallogr 2002; 58:1948–1954. · DOI · Paper page
  33. Ludtke SJ, Baldwin PR, Chiu W . EMAN: semiautomated software for high-resolution single-particle reconstructions. J Struct Biol 1999; 128:82–97. · DOI
  34. Shaikh TR, Gao H, Baxter WT, et al. SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nat Protoc 2008; 3:1941–1974. · DOI
  35. Li XM, Mooney P, Zheng S, et al. Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nat Methods 2013; 10:584–590. · DOI
  36. Mindell JA, Grigorieff N . Accurate determination of local defocus and specimen tilt in electron microscopy. J Struct Biol 2003; 142:334–347. · DOI
  37. Scheres SHW . RELION: implementation of a Bayesian approach to cryo-EM structure determination. J Struct Biol 2012; 180:519–530. · DOI · Paper page
  38. Pettersen EF, Goddard TD, Huang CC, et al. UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem 2004; 25:1605–1612. · DOI

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Metadata

Authors
Gong, X., Qian, H., Shao, W., Li, J., Wu, J., Liu, J.-J., Li, W., Wang, H.-W., Espenshade, P., & Yan, N.
Venue
Cell Research
Published
2016-11
Volume
26
Issue
11
Pages
1197-1211
ISSN
  • 1001-0602
  • 1748-7838
Cited by
31
References
2
Language
en

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