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Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein

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The Cerebellum as a Neuronal Machine

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Cre reporter strains produced by targeted insertion of EYFP and ECFP into the ROSA26 locus

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Imaging Neuronal Subsets in Transgenic Mice Expressing Multiple Spectral Variants of GFP

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Partitioning of Lipid-Modified Monomeric GFPs into Membrane Microdomains of Live Cells

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A gene expression atlas of the central nervous system based on bacterial artificial chromosomes

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Discovery and characterization of novel Cre-type tyrosine site-specific recombinases for advanced genome engineering

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Synthetic biology: applying biological circuits beyond novel therapies

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Activation of mTORC1 in chondrocytes does not affect proliferation or differentiation, but causes the resting zone of the growth plate to become disordered

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Using time-lapse fluorescence microscopy to study gene regulation

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Intestinal stem cells and intestinal organoids

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A New Generation of Lineage Tracing Dynamically Records Cell Fate Choices

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A review of functional magnetic resonance imaging for Brainnetome

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Automated image computing reshapes computational neuroscience

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Lights, Camera, and Action: Vertebrate Skin Sets the Stage for Immune Cell Interaction with Arthropod-Vectored Pathogens

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All-in-one construct for genome engineering using Cre-lox technology

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Exploring the significance of morphological diversity for cerebellar granule cell excitability

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Mechanisms of Müller glial cell morphogenesis

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Neural stem cell heterogeneity in the mammalian forebrain

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Mutationally-activated PI3’-kinase-α promotes de-differentiation of lung tumors initiated by the BRAFV600E oncoprotein kinase

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DNA Damage Promotes Epithelial Hyperplasia and Fate Mis-specification via Fibroblast Inflammasome Activation

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Over the Rainbow: 25 Years of Confocal Imaging

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T cell help shapes B cell tolerance

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Applications of multiphoton microscopy in imaging cerebral and retinal organoids

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Methods for in vivo molecular imaging

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Clonal analysis by tunable CRISPR-mediated excision

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Home for a rest: stem cell niche of the postnatal growth plate

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Dual recombinases-based genetic lineage tracing for stem cell research with enhanced precision

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Bone Marrow-Derived Alk1 Mutant Endothelial Cells and Clonally Expanded Somatic Alk1 Mutant Endothelial Cells Contribute to the Development of Brain Arteriovenous Malformations in Mice

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Multicolor strategies for investigating clonal expansion and tissue plasticity

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New Tools for Lineage Tracing in Cancer In Vivo

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A ‘tool box’ for deciphering neuronal circuits in the developing chick spinal cord

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Astrocytes reassessment - an evolving concept part one: embryology, biology, morphology and reactivity

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Lymph Node Stroma Dynamics and Approaches for Their Visualization

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Computer Simulation of Multi-Color Brainbow Staining and Clonal Evolution of B Cells in Germinal Centers

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Multi-color clonal tracking reveals intra-stage proliferative heterogeneity during mammary tumor progression

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Comparative molecular neuroanatomy of mammalian neocortex: What can gene expression tell us about areas and layers?

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Photons pushed together

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Embryonic hematopoiesis under microscopic observation

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Spectral imaging in preclinical research and clinical pathology.

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Transcriptional targeting to brain cells: Engineering cell type-specific promoter containing cassettes for enhanced transgene expression

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De novo neurogenesis by targeted expression of Atoh7 to Müller glia cells

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Imaging whole nervous systems: insights into behavior from worms to fish

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Illuminating Cellular Biochemistry: Fluorogenic Chemogenetic Biosensors for Biological Imaging

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A Rainbow Reporter Tracks Single Cells and Reveals Heterogeneous Cellular Dynamics among Pluripotent Stem Cells and Their Differentiated Derivatives

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Genetically engineered zebrafish as models of skeletal development and regeneration

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Analyzing Retinal Axon Guidance in Zebrafish

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DiI-Labeling of DRG Neurons to Study Axonal Branching in a Whole Mount Preparation of Mouse Embryonic Spinal Cord

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A Bayesian compressed-sensing approach for reconstructing neural connectivity from subsampled anatomical data

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Preferential Lentiviral Targeting of Astrocytes in the Central Nervous System

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Optical modulation of neurotransmission using calcium photocurrents through the ion channel LiGluR

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The cell-permeable Aβ1-6A2VTAT(D) peptide reverts synaptopathy induced by Aβ1-42wt

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Novel Heterotypic Rox Sites for Combinatorial Dre Recombination Strategies

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Use and Visualization of Neuroanatomical Viral Transneuronal Tracers

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Simulated blast overpressure induces specific astrocyte injury in an ex vivo brain slice model

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Multispectral tracing in densely labeled mouse brain with nTracer

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Imaging, Visualization, and Computation in Developmental Biology

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Unsupervised machine learning using an imaging mass spectrometry dataset automatically reassembles grey and white matter

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Deciphering neural heterogeneity through cell lineage tracing

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NeuronBank: a tool for cataloging neuronal circuitry

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Current and Future Applications of Transcriptomics for Discovery in CNS Disease and Injury

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Uniform volumetric single-cell processing for organ-scale molecular phenotyping

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Systematic optimization and prediction of cre recombinase for precise genome editing in mice

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Tools for visualizing cell–cell ‘interactomes’

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Inhibitory neuron‐specific Cre‐dependent red fluorescent labeling using VGAT BAC‐based transgenic mouse lines with identified transgene integration sites

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Lipid-Directed Covalent Labeling of Plasma Membranes for Long-Term Imaging, Barcoding and Manipulation of Cells

Aknine, N., Pelletier, R., & Klymchenko, A. S. (2025) · JACS Au · doi:10.1021/jacsau.4c01134 · Cited by 23

Tracing Activity Across the Whole Brain Neural Network with Optogenetic Functional Magnetic Resonance Imaging

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Neuroprotective effect of heme oxygenase-2 knockout in the blood injection model of intracerebral hemorrhage

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Bioinformatics approaches to single-cell analysis in developmental biology

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Site-specific recombinatorics: in situ cellular barcoding with the Cre Lox system

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A Lentiviral Fluorescent Genetic Barcoding System for Flow Cytometry-Based Multiplex Tracking

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Rapid fluorescence imaging of spinal cord following epidural administration of a nerve-highlighting fluorophore

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Feasibility of 3D Reconstruction of Neural Morphology Using Expansion Microscopy and Barcode-Guided Agglomeration

Yoon, Y., Dai, P., Wohlwend, J., Chang, J., Marblestone, A. H., & Boyden, E. S. (2017) · Frontiers in Computational Neuroscience · doi:10.3389/fncom.2017.00097 · Cited by 20

Identification of Neuronal Lineages in the Drosophila Peripheral Nervous System with a “Digital” Multi-spectral Lineage Tracing System

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Ultrasound Activation of Mechanosensory Ion Channels in Caenorhabditis Elegans

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Label-free morphometry of retinal nerve fiber bundles by second-harmonic-generation microscopy

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Simultaneous Acquisition of Multicolor Information From Neural Circuits in Resin-Embedded Samples

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The Central Role of Neuroinformatics in the National Academy of Engineering’s Grandest Challenge: Reverse Engineer the Brain

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Facial Reanimation

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Facial Aberrant Reinnervation Syndrome Following Facial Nerve Injury and Recovery

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Fluorescent genetic barcoding in mammalian cells for enhanced multiplexing capabilities in flow cytometry

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Generation and Characterization of a Transgenic Zebrafish Expressing the Reverse Tetracycline Transactivator

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Establishment of a Cre/loxP recombination system for N-terminal epitope tagging of genes in Tetrahymena

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Strategies for immunohistochemical protein localization using antibodies: What did we learn from neurotransmitter transporters in glial cells and neurons

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Multiscale Kernels for Enhanced U-Shaped Network to Improve 3D Neuron Tracing

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Cell Signaling Pathway Reporters in Adult Hematopoietic Stem Cells

de Roo, J. J. D., & Staal, F. J. T. (2020) · Cells · doi:10.3390/cells9102264 · Cited by 19

Intersectional targeting of defined neural circuits by adeno‐associated virus vectors

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Modern Trends in Imaging X: Spectral Imaging in Preclinical Research and Clinical Pathology

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Monocyte Recruitment for Vascular Tissue Regeneration

Nasiri, B., Yi, T., Wu, Y., Smith, R. J., Podder, A. K., Breuer, C. K., & Andreadis, S. T. (2022) · Advanced Healthcare Materials · doi:10.1002/adhm.202200890 · Cited by 19

A cellular hierarchy of Notch and Kras signaling controls cell fate specification in the developing mouse salivary gland

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ARF suppression by MYC but not MYCN confers increased malignancy of aggressive pediatric brain tumors

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β1 integrins regulate cellular behaviour and cardiomyocyte organization during ventricular wall formation

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Variability of multidimensional diffusion–relaxation MRI estimates in the human brain

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Investigating neuronal function with optically controllable proteins

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Two-photon imaging of multiple fluorescent proteins by phase-shaping and linear unmixing with a single broadband laser

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Optical Imaging of Neuronal Activity and Visualization of Fine Neural Structures in Non-Desheathed Nervous Systems

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Efficient large core fiber-based detection for multi-channel two-photon fluorescence microscopy and spectral unmixing

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ScxLin cells directly form a subset of chondrocytes in temporomandibular joint that are sharply increased in Dmp1-null mice

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