The DOI matches its Crossref record; 48 of the 48 references it cites were found in a registry or an index.
Bifidobacteria can protect from enteropathogenic infection through production of acetate
Abstract
The human gut is colonized with a wide variety of microorganisms, including species, such as those belonging to the bacterial genus Bifidobacterium, that have beneficial effects on human physiology and pathology. Among the most distinctive benefits of bifidobacteria are modulation of host defence responses and protection against infectious diseases. Nevertheless, the molecular mechanisms underlying these effects have barely been elucidated. To investigate these mechanisms, we used mice associated with certain bifidobacterial strains and a simplified model of lethal infection with enterohaemorrhagic Escherichia coli O157:H7, together with an integrated 'omics' approach. Here we show that genes encoding an ATP-binding-cassette-type carbohydrate transporter present in certain bifidobacteria contribute to protecting mice against death induced by E. coli O157:H7. We found that this effect can be attributed, at least in part, to increased production of acetate and that translocation of the E. coli O157:H7 Shiga toxin from the gut lumen to the blood was inhibited. We propose that acetate produced by protective bifidobacteria improves intestinal defence mediated by epithelial cells and thereby protects the host against lethal infection.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Additional support for the role of enteric bacteria in maintaining normal barrier function is provided by data that SCFA (e.g., butyrate and acetate) improve intestinal barrier function (64, 84).”
From Intestinal microbiota and immune function in the pathogenesis of irritable bowel syndrome (2013) · cites this paper as [64]
In the citing paper
“Numerous in vitro studies have demonstrated that bifidobacteria can inhibit pathogens through the production of organic acids (38), antibacterial peptides (39), quorum-sensing inhibitors (40, 41), or immune stimulation (42) among other mechanisms, providing molecular clues of their capacity to prevent certain infections.”
From Bifidobacteria and Their Health-Promoting Effects (2017) · cites this paper as [38]
In the citing paper
“these bacteria have been linked to fortification of the gut mucosal protection through activities against pathogens12, 13.”
From Diet and the Intestinal Microbiome: Associations, Functions, and Implications for Health and Disease (2014) · cites this paper as [13]
In the citing paper
“which have been shown in vitro and in vivo to support the integrity of the intestinal mucosa in a variety of ways (Fukuda et al., 2011; Gaudier et al., 2004; Macia et al., 2015; Willemsen et al., 2003; Wrzosek et al., 2013).”
From Understanding the Holobiont: How Microbial Metabolites Affect Human Health and Shape the Immune System (2017) · cites this paper as Fukuda et al., 2011
In the citing paper
“Bifidobacterium longum has been shown to protect mice from enterohemorrhagic E. coli O157 infection through the production of SCFAs, that prevent IEC apoptosis and inflammation, thus preserving gut epithelium integrity, and reducing the spread of Stx2 toxin into the bloodstream, ultimately improving host survival [52].”
From Antibiotic-Induced Changes in the Intestinal Microbiota and Disease (2016) · cites this paper as [52]
In the citing paper
“Acetate production was associated with protection against Escherichia coli O157 in mice that were mono-colonized by Bifidobacterium [39].”
From Role of the gut microbiota in nutrient competition and protection against intestinal pathogen colonization (2023) · cites this paper as [39]
Citations
Cites
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
Lowe, T. M., & Eddy, S. R. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.5.955 · Cited by 11,200
Summaries of Affymetrix GeneChip probe level data
Irizarry, R. A. (2003) · Nucleic Acids Research · doi:10.1093/nar/gng015 · Cited by 4,837
Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43
Maslowski, K. M., Vieira, A. T., Ng, A., Kranich, J., Sierro, F., Yu, D., Schilter, H. C., Rolph, M. S., Mackay, F., Artis, D., et al. (2009) · Nature · doi:10.1038/nature08530 · Cited by 3,241
Improved microbial gene identification with GLIMMER
Delcher, A. L. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.23.4636 · Cited by 2,493
Shiga-toxin-producing Escherichia coli and haemolytic uraemic syndrome
Tarr, P. I., Gordon, C. A., & Chandler, W. L. (2005) · The Lancet · doi:10.1016/s0140-6736(05)71144-2 · Cited by 1,791
Activation of human aortic smooth-muscle cells is inhibited by PPARα but not by PPARγ activators
Staels, B., Köenig, W., Habib, A., Merval, R., Lebret, M., Pineda‐Torra, I., Delerive, P., Fadel, A., Chinetti, G., Fruchart, J., et al. (1998) · Nature · doi:10.1038/31701 · Cited by 1,138
Liver X receptors as integrators of metabolic and inflammatory signaling
Zelcer, N. (2006) · Journal of Clinical Investigation · doi:10.1172/jci27883 · Cited by 978
Schell, M. A., Karmirantzou, M., Snel, ., Vilanova, D., Berger, B. W., Pessi, G., Zwahlen, M.-C., Desiere, F., Peer Bork, B., Delley, M., et al. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.212527599 · Cited by 942
Sela, D. A., Chapman, J., Adeuya, A., Kim, J., Chen, F., Whitehead, T. R., Lapidus, A. L., Rokhsar, D. S., Lebrilla, C. B., German, J. B., et al. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0809584105 · Cited by 895
Tedelind, S., Westberg, F., Kjerrulf, M., & Vidal, A. (2007) · World Journal of Gastroenterology · doi:10.3748/wjg.v13.i20.2826 · Cited by 880
Flagged first, then by citations
Cited by
Sorted by citations
Items 601–700 of 1,007
Zhou, J., Yang, Q., Wei, W., Huo, J., & Wang, W. (2024) · Journal of Ethnopharmacology · doi:10.1016/j.jep.2024.118928 · Cited by 73
Ahmed, T., Auble, D., Berkley, J. A., Black, R. E., Ahern, P. P., Hossain, M., Hsieh, A. T., Ireen, S., Arabi, M., & Gordon, J. I. (2014) · Annals of the New York Academy of Sciences · doi:10.1111/nyas.12487 · Cited by 71
Krumbeck, J. A., Maldonado-Gómez, M. X., Martínez, I., Frese, S. A., Burkey, T. E., Rasineni, K., Ramer‐Tait, A. E., Harris, E. N., Hutkins, R. W., & Walter, J. (2015) · Applied and Environmental Microbiology · doi:10.1128/aem.03903-14 · Cited by 71
Hirayama, Y., Sakanaka, M., Fukuma, H., Murayama, H., Kano, Y., Fukiya, S., & Yokota, A. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.00588-12 · Cited by 69
The microbiome and systemic lupus erythematosus
Katz-Agranov, N. S., & Zandman‐Goddard, G. (2017) · Immunologic Research · doi:10.1007/s12026-017-8906-2 · Cited by 73
Proton Pump Inhibitors: Risks and Rewards and Emerging Consequences to the Gut Microbiome
Singh, A., Cresci, G., & Kirby, D. F. (2018) · Nutrition in Clinical Practice · doi:10.1002/ncp.10181 · Cited by 69
Kobayashi, M., Mikami, D., Uwada, J., Yazawa, T., Kamiyama, K., Kimura, H., Taniguchi, T., & Iwano, M. (2018) · Oncotarget · doi:10.18632/oncotarget.25809 · Cited by 70
Zabel, B., Yde, C. C., Roos, P., Marcussen, J., Jensen, H. M., Salli, K. M., Hirvonen, J., Ouwehand, A. C., & Morovic, W. (2019) · Scientific Reports · doi:10.1038/s41598-019-43780-9 · Cited by 70
Traditional Chinese Medicine and Gut Microbiome: Their Respective and Concert Effects on Healthcare
Zhang, R., Gao, X., Bai, H., & Ning, K. (2020) · Frontiers in Pharmacology · doi:10.3389/fphar.2020.00538 · Cited by 68
Environmental and Human Microbiome for Health
Panthee, B., Gyawali, S., Panthee, P., & Techato, K. (2022) · Life · doi:10.3390/life12030456 · Cited by 68
Role of the microbiome and its metabolites in ankylosing spondylitis
Song, Z., Yuan, D., & Zhang, S. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.1010572 · Cited by 72
The potential role of nondigestible Raffinose family oligosaccharides as prebiotics
Kanwal, F., Ren, D., Kanwal, W., Ding, M., Su, J., & Shang, X. (2023) · Glycobiology · doi:10.1093/glycob/cwad015 · Cited by 72
Roager, H. M., Stanton, C., & Hall, L. J. (2023) · Gut Microbes · doi:10.1080/19490976.2023.2192151 · Cited by 73
Odenwald, M. A., Lin, H., Lehmann, C. J., Dylla, N. P., Cole, C. G., Mostad, J. D., Pappas, T. E., Ramaswamy, R., Moran, A., Hutchison, A. L., et al. (2023) · Nature Microbiology · doi:10.1038/s41564-023-01493-w · Cited by 69
Ren, D., Li, C., Qin, Y., Yin, R., Li, X., Tian, M., Du, S., Guo, H., Liu, C., Zhu, N., et al. (2012) · Anaerobe · doi:10.1016/j.anaerobe.2012.08.001 · Cited by 68
Role of gut microbiota: Obesity and NAFLD
Gangarapu, V., Yıldız, K., İnce, A. T., & Baysal, B. (2014) · The Turkish Journal of Gastroenterology · doi:10.5152/tjg.2014.7886 · Cited by 68
Briskey, D. R., Tucker, P. S., Johnson, D. W., & Coombes, J. S. (2016) · Clinical and Experimental Nephrology · doi:10.1007/s10157-016-1255-y · Cited by 68
Bifari, F., Ruocco, C., Decimo, I., Fumagalli, G. F., Valerio, A., & Nisoli, E. (2017) · Genes & Nutrition · doi:10.1186/s12263-017-0582-2 · Cited by 70
Kaczmarczyk, M., Löber, U., Adamek, K., Węgrzyn, D., Skonieczna‐Żydecka, K., Malinowski, D., Łoniewski, I., Markó, L., Ulas, T., Forslund, S. K., et al. (2021) · Journal of Translational Medicine · doi:10.1186/s12967-021-02839-w · Cited by 72
Cai, G., Wu, Y., Wusiman, A., Gu, P., Mao, N., Xu, S., Zhu, T., Feng, Z., Liu, Z., & Wang, D. (2021) · Food & Function · doi:10.1039/d1fo01008e · Cited by 67
Environmental enteric dysfunction: gut and microbiota adaptation in pregnancy and infancy
Cowardin, C. A., Syed, S., Iqbal, N. T., Jamil, Z., Sadiq, K., Iqbal, J., Ali, A., & Moore, S. R. (2022) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-022-00714-7 · Cited by 71
Zhong, H., Jiang, J., Hussain, M., Zhang, H., Ling, C., & Guan, R. (2025) · Advanced Science · doi:10.1002/advs.202500304 · Cited by 75
Rath, C. M. B., Alexandrov, T., Higginbottom, S. K., Song, J., Milla, M. E., Fischbach, M. A., Sonnenburg, J. L., & Dorrestein, P. C. (2012) · Analytical Chemistry · doi:10.1021/ac302039u · Cited by 67
Sarbini, S. R., Kolida, S., Naeye, T., Einerhand, A. W. C., Gibson, G. R., & Rastall, R. A. (2013) · Journal of Functional Foods · doi:10.1016/j.jff.2013.09.015 · Cited by 67
Wang, H., Zhang, W., Zuo, L., Zhu, W., Wang, B., Li, Q., & Li, J. (2012) · British Journal Of Nutrition · doi:10.1017/s0007114512004308 · Cited by 68
Asahara, T., Takahashi, A., Yuki, N., Kaji, R., Takahashi, T., & Nomoto, K. (2016) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.02928-15 · Cited by 67
Dupaul-Chicoine, J., Dagenais, M., & Saleh, M. (2013) · Inflammatory Bowel Diseases · doi:10.1097/mib.0b013e31828dcac7 · Cited by 68
Ejby, M., Fredslund, F., Andersen, J. M., Žagar, A. V., Henriksen, J. R., Andersen, T. L., Svensson, B., Slotboom, D. J., & Hachem, M. A. (2016) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.746529 · Cited by 69
Abnormal Barrier Function in Gastrointestinal Disorders
Farré, R., & Vicario, M. (2016) · Handbook of experimental pharmacology · doi:10.1007/164_2016_107 · Cited by 67
Kimelman, H., & Shemesh, M. (2019) · Microorganisms · doi:10.3390/microorganisms7100407 · Cited by 72
Health promoting activities of probiotics
Tang, C., & Lu, Z. (2019) · Journal of Food Biochemistry · doi:10.1111/jfbc.12944 · Cited by 68
Natural Polyphenols: A Potential Therapeutic Approach to Hypoglycemia
Zhao, C., Wan, X., Zhou, S. D., & Cao, H. (2020) · eFood · doi:10.2991/efood.k.200302.001 · Cited by 66
Zhao, L. M., Xie, Q., Evivie, S. E., Liu, D., Dong, J., Ping, L., Liu, F., Li, B., & Huo, G. (2021) · Food & Function · doi:10.1039/d1fo01164b · Cited by 66
Intact cells: “Nutritional capsules” in plant foods
Xiong, W., Devkota, L., Zhang, B., Muir, J. G., & Dhital, S. (2022) · Comprehensive Reviews in Food Science and Food Safety · doi:10.1111/1541-4337.12904 · Cited by 66
Zhao, L., Nicholson, J. K., Lü, A., Wang, Z., Tang, H., Holmes, E. C., Shen, J., Zhang, X., Li, J. V., & Lindon, J. C. (2012) · Journal of Proteome Research · doi:10.1021/pr3001628 · Cited by 66
Dostal, A., Gagnon, M., Chassard, C., Zimmermann, M. B., O’Mahony, L., & Lacroix, C. (2014) · PLoS ONE · doi:10.1371/journal.pone.0093549 · Cited by 66
Tokuda, G., Tsuboi, Y., Kihara, K., Saitou, S., Moriya, S., Lo, N. C., & Kikuchi, J. (2014) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2014.0990 · Cited by 68
Self-citationCharoensiddhi, S., Conlon, M. A., Vuaran, M. S., Franco, C. M. M., & Zhang, W. Y. (2017) · Journal of Applied Phycology · doi:10.1007/s10811-017-1146-y · Cited by 66
Huang, Y., Wu, B.-H., Chu, Y., Chang, W.-C., & WU, M. C. (2018) · Nutrients · doi:10.3390/nu10091143 · Cited by 69
Skonieczna‐Żydecka, K., Kaczmarczyk, M., Łoniewski, I., Lara, L. F., Koulaouzidis, A., Misera, A., Maciejewska, D., & Marlicz, W. M. (2018) · Journal of Clinical Medicine · doi:10.3390/jcm7120556 · Cited by 66
Gao, H., Shu, Q., Chen, J., Fan, K., Xu, P., Zhou, Q., Li, C., & Zheng, H. X. (2019) · mSystems · doi:10.1128/msystems.00048-19 · Cited by 69
Gut Microbiome Modulates Response to Cancer Immunotherapy
Khan, M. A. W., Ologun, G. O., Arora, R., McQuade, J. L., & Wargo, J. A. (2020) · Digestive Diseases and Sciences · doi:10.1007/s10620-020-06111-x · Cited by 69
The Eukaryotic Microbiome: Origins and Implications for Fetal and Neonatal Life
Miller, W. B. (2016) · Frontiers in Pediatrics · doi:10.3389/fped.2016.00096 · Cited by 66
Shi, Z., Zhu, Y., Teng, C., Yao, Y., Ren, G., & Richel, A. (2020) · Food & Function · doi:10.1039/c9fo01813a · Cited by 65
Gut microbiota in regulatory T cell generation and function: mechanisms and health implications
Sharma, A., Sharma, G., & Im, S. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2516702 · Cited by 68
Rund, S. A., Rohde, H., Sonnenborn, U., & Oelschlaeger, T. A. (2013) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2012.11.006 · Cited by 70
Hamajima, H., Matsunaga, H., Fujikawa, A., Sato, T., Mitsutake, S., Yanagita, T., Nagao, K., Nakayama, J., & Kitagaki, H. (2016) · SpringerPlus · doi:10.1186/s40064-016-2950-6 · Cited by 65
Bacterial Signaling at the Intestinal Epithelial Interface in Inflammation and Cancer
Coleman, O. I., & Haller, D. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2017.01927 · Cited by 66
Ertürk-Hasdemir, D., & Kasper, D. L. (2018) · Annals of the New York Academy of Sciences · doi:10.1111/nyas.13660 · Cited by 69
Murakami, M., Iwamoto, J., Honda, A., Tsuji, T., Tamamushi, M., Ueda, H., Monma, T., Konishi, N., Yara, S., Hirayama, T. T., et al. (2018) · Inflammatory Bowel Diseases · doi:10.1093/ibd/izy022 · Cited by 67
Cheng, C., Wei, H., Wang, P., Yu, H., Zhang, X. M., Jiang, S., & Peng, J. (2018) · animal · doi:10.1017/s1751731118001611 · Cited by 65
Thompson, K. G., Rainer, B. M., Antonescu, C. M., Florea, L., Mongodin, E. F., Kang, S., & Chien, A. L.-L. (2020) · Annals of Dermatology · doi:10.5021/ad.2020.32.1.21 · Cited by 65
Visnapuu, T., Ernits, K., & Alamäe, T. (2015) · New Biotechnology · doi:10.1016/j.nbt.2015.01.009 · Cited by 66
Vignesh, R., Swathirajan, C. R., Tun, Z. H., Rameshkumar, M. R., Solomon, S. S., & Balakrishnan, P. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2020.607734 · Cited by 66
Chen, C., Zhao, G., Chen, W., & Guo, B. (2015) · Applied and Environmental Microbiology · doi:10.1128/aem.02426-15 · Cited by 64
Comparative metabolomic and ionomic approach for abundant fishes in estuarine environments of Japan
Yoshida, S., Date, Y., Akama, M., & Kikuchi, J. (2014) · Scientific Reports · doi:10.1038/srep07005 · Cited by 65
Self-citationCordonnier, C., Bihan, G. L., Emond-Rhéault, J.-G., Garrivier, A., Harel, J., & Jubelin, G. (2016) · Toxins · doi:10.3390/toxins8010014 · Cited by 65
Pereira, R. V. V., Lima, S. F., Siler, J. D., Foditsch, C., Warnick, L. D., & Bicalho, R. C. (2016) · PLoS ONE · doi:10.1371/journal.pone.0147525 · Cited by 64
The fecal microbiota composition of boar Duroc, Yorkshire, Landrace and Hampshire pigs
Xiao, Y., Li, K., Xiang, Y., Zhou, W., Gui, G., & Yang, H. (2017) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.16.0746 · Cited by 64
Li, S., Zheng, J., Deng, K., Chen, L., Zhao, X., Jiang, X., Fang, Z., Che, L. Q., Xu, S., Feng, B., et al. (2018) · Journal of Animal Science · doi:10.1093/jas/sky197 · Cited by 64
Inturri, R., Trovato, L., Volti, G. L., Oliveri, S. M., & Blandino, G. (2019) · Heliyon · doi:10.1016/j.heliyon.2019.e02891 · Cited by 63
Ding, S., Pang, Z., Chen, X., Li, Z., Liu, X., Zhai, Q., Huang, J., & Ruan, Z. (2020) · Journal of Inflammation · doi:10.1186/s12950-020-00242-8 · Cited by 63
Lv, K., Yuan, Q., Li, H., Li, T., Ma, H., Gao, C., Zhang, S., Liu, Y., & Zhao, L. (2022) · Foods · doi:10.3390/foods11050725 · Cited by 63
Social Interaction, Noise and Antibiotic-Mediated Switches in the Intestinal Microbiota
Bucci, V., Bradde, S., Biroli, G., & Xavier, J. B. (2012) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1002497 · Cited by 63
Liu, H., Dicksved, J., Lundh, T., & Lindberg, J. E. (2014) · Pathogens · doi:10.3390/pathogens3010187 · Cited by 64
In Vitro Study of the Effect of Quinoa and Quinoa Polysaccharides on Human Gut Microbiota
Zeyneb, H., Pei, H., Cao, X., Wang, Y., Win, Y., & Gong, L. (2021) · Food Science & Nutrition · doi:10.1002/fsn3.2540 · Cited by 62
Motegi, H., Tsuboi, Y., Saga, A., Kagami, T., Inoue, M., Toki, H., Minowa, O., Noda, T., & Kikuchi, J. (2015) · Scientific Reports · doi:10.1038/srep15710 · Cited by 64
Self-citationZhu, G., Ma, F., Wang, G., Wang, Y., Zhao, J., Zhang, H., & Chen, W. (2018) · Food & Function · doi:10.1039/c8fo00100f · Cited by 63
Characterization of Wild and Captive Baboon Gut Microbiota and Their Antibiotic Resistomes
Tsukayama, P., Boolchandani, M., Patel, S., Pehrsson, E. C., Gibson, M. K., Chiou, K. L., Jolly, C. J., Rogers, J., Phillips‐Conroy, J. E., & Dantas, G. A. (2018) · mSystems · doi:10.1128/msystems.00016-18 · Cited by 64
Verruck, S., Barretta, C., Miotto, M., Canella, M. H. M., de Liz, G. R., Maran, B. M., Garcia, S. G., da Silveira, S. M., Vieira, C. R. W., da Cruz, A. G., et al. (2019) · Food Research International · doi:10.1016/j.foodres.2019.108690 · Cited by 64
Ding, H., Zhao, X., Azad, M. A. K., Ma, C., Gao, Q., He, J., & Kong, X. (2021) · Food & Function · doi:10.1039/d1fo00208b · Cited by 62
Tian, P., Zhu, H., Qian, X., Chen, Y., Wang, Z., Zhao, J., Zhang, H., Wang, G., & Chen, W. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.755481 · Cited by 62
Yang, Z., Zhou, Y., Han, Z., He, K., Zhang, Y., Wu, D., & Chen, H. (2024) · Scientific Reports · doi:10.1038/s41598-024-59399-4 · Cited by 63
Environmental disruption of host–microbe co-adaptation as a potential driving force in evolution
Soen, Y. (2014) · Frontiers in Genetics · doi:10.3389/fgene.2014.00168 · Cited by 64
Cancer and the microbiome: potential applications as new tumor biomarker
Shahanavaj, K., Bazo, I. G., Castiglia, M., Bronte, G., Passiglia, F., Carreca, A. P., del Pozo, J. L., Russo, A. D., Peeters, M., & Rolfo, C. D. (2014) · Expert Review of Anticancer Therapy · doi:10.1586/14737140.2015.992785 · Cited by 62
Nagata, S., Asahara, T., Wang, C., Suyama, Y., Chonan, O., Takano, K., Daibou, M., Takahashi, T., Nomoto, K., & Yamashiro, Y. (2015) · Annals of Nutrition and Metabolism · doi:10.1159/000442305 · Cited by 62
Oral administration of kefiran exerts a bifidogenic effect on BALB/c mice intestinal microbiota
Hamet, M. F., Medrano, M., Pérez, P. F., & Abraham, A. G. (2015) · Beneficial Microbes · doi:10.3920/bm2015.0103 · Cited by 62
García‐Ródenas, C. L., Lepage, M., Ngom‐Bru, C., Fotiou, A., Papagaroufalis, K., & Berger, B. W. (2016) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/mpg.0000000000001198 · Cited by 62
Longitudinal changes in the gut microbiome of infants on total parenteral nutrition
Dahlgren, A. F., Pan, A., Lam, V., Gouthro, K. C., Simpson, P. M., Salzman, N. H., & Nghiem‐Rao, T. H. (2019) · Pediatric Research · doi:10.1038/s41390-019-0391-y · Cited by 64
Pollock, F. J., Lamb, J. B., van de Water, J. A. J. M., Smith, H. A., Schaffelke, B., Willis, B. L., & Bourne, D. G. (2019) · Royal Society Open Science · doi:10.1098/rsos.190355 · Cited by 64
Dworsky-Fried, Z., Kerr, B. J., & Taylor, A. M. W. (2020) · Neurobiology of Pain · doi:10.1016/j.ynpai.2020.100045 · Cited by 64
Inclusion of purified dietary fiber during gestation improved the reproductive performance of sows
Zhuo, Y., Feng, B., Xuan, Y., Che, L., Fang, Z., Lin, Y., Xu, S., Li, J., Feng, B., & Wu, D. (2020) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-020-00450-5 · Cited by 62
Mahooti, M., Miri, S. M., Abdolalipour, E., & Ghaemi, A. (2020) · Microbial Pathogenesis · doi:10.1016/j.micpath.2020.104452 · Cited by 62
den Abbeele, P. V., Sprenger, N., Ghyselinck, J., Marsaux, B., Marzorati, M., & Rochat, F. (2021) · Nutrients · doi:10.3390/nu13030726 · Cited by 61
Host and Microbe Blood Metagenomics Reveals Key Pathways Characterizing Critical Illness Phenotypes
Neyton, L. P. A., Sinha, P., Sarma, A. A., Mick, E., Kalantar, K., Chen, S., Wu, N., Delucchi, K., Zhuo, H., Bos, L. D. J., et al. (2024) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.202308-1328oc · Cited by 62
Miyashita, A., Iyoda, S., Ishii, K., Hamamoto, H., Sekimizu, K., & Kaito, C. (2012) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2012.02599.x · Cited by 61
Various Forms of Tissue Damage and Danger Signals Following Hematopoietic Stem-Cell Transplantation
Ramadan, A. M., & Paczesny, S. (2015) · Frontiers in Immunology · doi:10.3389/fimmu.2015.00014 · Cited by 65
Kozyrovska, N., Reva, O. N., Goginyan, V. B., & Vera, J.-P. P. D. (2012) · Biopolymers and Cell · doi:10.7124/bc.000034 · Cited by 64
Prebiotics metabolism by gut-isolated probiotics
Rawi, M. H., Zaman, S. A., Pa’ee, K. F., Leong, S. S., & Sarbini, S. R. (2020) · Journal of Food Science and Technology · doi:10.1007/s13197-020-04244-5 · Cited by 63
Nguyen, M., Holdbrooks, H., Mishra, P. K., Abrantes, M. A., Eskew, S., Garma, M., Oca, C.-G., McGuckin, C., Hein, C. T., Mitchell, R. D., et al. (2021) · Frontiers in Pediatrics · doi:10.3389/fped.2021.618009 · Cited by 61
Intestinal Microbiota in Colorectal Cancer Surgery
Koliarakis, I., Athanasakis, E., Sgantzos, M. N., Mariolis-Sapsakos, T. D., Xynos, E., Chrysos, E., Souglakos, J., & Tsiaoussis, J. (2020) · Cancers · doi:10.3390/cancers12103011 · Cited by 63
Impact of Altered Gut Microbiota and Its Metabolites in Cystic Fibrosis
Thavamani, A., Salem, I., Sferra, T. J., & Sankararaman, S. (2021) · Metabolites · doi:10.3390/metabo11020123 · Cited by 66
Quitadamo, P. A., Comegna, L., & Cristalli, P. (2021) · Frontiers in Public Health · doi:10.3389/fpubh.2020.589736 · Cited by 60
Impact of synbiotics on gut microbiota during early life: a randomized, double-blind study
Phavichitr, N., Wang, S., Chomtho, S., Tantibhaedhyangkul, R., Kakourou, A., Intarakhao, S., Jongpiputvanich, S., COLOR Study Group, Wongteerasut, A., Amor, K. B., et al. (2021) · Scientific Reports · doi:10.1038/s41598-021-83009-2 · Cited by 59
Predigestion as an Evolutionary Impetus for Human Use of Fermented Food
Amato, K. R., Mallott, E. K., Maia, P. D., & Sardaro, M. L. S. (2021) · Current Anthropology · doi:10.1086/715238 · Cited by 63
Yang, B., Huang, S., Zhao, G., & Ma, Q. (2022) · Animal nutrition · doi:10.1016/j.aninu.2022.08.003 · Cited by 59
Sakaguchi, K., He, J., Tani, S., Kano, Y., & Suzuki, T. (2012) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-012-4090-4 · Cited by 59
Self-citationReygner, J., Condette, C. J., Bruneau, A., Delanaud, S., Rhazi, L., Dépeint, F., Abdennebi‐Najar, L., Bach, V., Mayeur, C., & Khorsi‐Cauet, H. (2016) · International Journal of Environmental Research and Public Health · doi:10.3390/ijerph13111088 · Cited by 59
Targeting the gut microbiota by dietary nutrients: A new avenue for human health
Li, D., Wang, P., Wang, P., Hu, X., & Chen, F. (2017) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2017.1363708 · Cited by 60
Intestinal Microbiota in Hirschsprung Disease
Neuvonen, M. I., Korpela, K., Kyrklund, K., Salonen, A., de Vos, W. M., Rintala, R. J., & Pakarinen, M. P. (2018) · Journal of Pediatric Gastroenterology and Nutrition · doi:10.1097/mpg.0000000000001999 · Cited by 59
Metadata
- Authors
- Fukuda, S., Toh, H., Hase, K., Oshima, K., Nakanishi, Y., Yoshimura, K., Tobe, T., Clarke, J. M., Topping, D. L., Suzuki, T., Taylor, T. D., Itoh, K., Kikuchi, J., Morita, H., Hattori, M., & Ohno, H.
- Affiliations
- RIKEN (JP)
- RIKEN Advanced Science Institute (JP)
- The University of Tokyo (JP)
- The University of Osaka (JP)
- Commonwealth Scientific and Industrial Research Organisation (AU)
- Gifu University (JP)
- Azabu University (JP)
- Chiba University (JP)
- Corresponding author
- Hattori, Masahira
- Ohno, Hiroshi
- ORCID
- Venue
- Nature
- Published
- 2011-01
- Volume
- 469
- Issue
- 7331
- Pages
- 543-547
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2045119680
- Cited by
- 2,387
- References
- 48
- Citations by year
- 2026: 138 · 2025: 166 · 2024: 199 · 2023: 161 · 2022: 208 · 2021: 244 · 2020: 199 · 2019: 155 · 2018: 162 · 2017: 155 · 2016: 130 · 2015: 129 · 2014: 121 · 2013: 90 · 2012: 93
- FWCI
- 158.47
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Funders
- Japan Society for the Promotion of Science (22689017)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Life Sciences › Immunology and Microbiology › Microbiology › Escherichia coli research studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Keywords
- Bifidobacterium longum, acetate, Escherichia coli O157:H7, probiotics, ABC transporters, carbohydrate transport, gut microbiota
- MeSH terms
- Acetates, Animals, Bifidobacterium, Chlorocebus aethiops, Escherichia coli Infections, Molecular Sequence Data, Vero Cells, Genome, Bacterial, Escherichia coli O157, Gene Expression Profiling, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review