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CellBIC: bimodality-based top-down clustering of single-cell RNA sequencing data reveals hierarchical structure of the cell type

Kim, J., Stanescu, D. E., & Won, K. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky698 · Cited by 25

Single cell RNA-Seq reveals pre-cDCs fate determined by transcription factor combinatorial dose

Ma, W., Lee, J., Backenroth, D., Zhou, Y. J., Bush, E. C., Sims, P. A., Liu, K., & Shen, Y. (2019) · BMC Molecular and Cell Biology · doi:10.1186/s12860-019-0199-y · Cited by 24

Independent component analysis based gene co-expression network inference (ICAnet) to decipher functional modules for better single-cell clustering and batch integration

Wang, W., Tan, H., Sun, M., Han, Y., Chen, W., Qiu, S., Zheng, K., Wei, G., & Ni, T. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkab089 · Cited by 27

Methods and platforms for analysis of nucleic acids from single-cell based on microfluidics

Liu, L., Dong, X., Tu, Y., Miao, G., Zhang, Z., Zhang, L., Wei, Z., Yu, D., & Qiu, X. (2021) · Microfluidics and Nanofluidics · doi:10.1007/s10404-021-02485-0 · Cited by 23

Single-Cell RNA Sequencing (scRNA-seq) in Cardiac Tissue: Applications and Limitations

Wang, M., Gu, M., Liu, L., Liu, Y., & Tian, L. (2021) · Vascular Health and Risk Management · doi:10.2147/vhrm.s288090 · Cited by 25

Glial progenitor heterogeneity and key regulators revealed by single-cell RNA sequencing provide insight to regeneration in spinal cord injury

Wei, H., Wu, X., Withrow, J. S., Durán, R. C., Singh, S. X., Chaboub, L. S., Rakshit, J., Mejia, J., Rolfe, A., Herrera, J. J., et al. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.112486 · Cited by 23

4D nucleomes in single cells: what can computational modeling reveal about spatial chromatin conformation?

Sekelja, M., Paulsen, J., & Collas, P. (2016) · Genome biology · doi:10.1186/s13059-016-0923-2 · Cited by 26

ShinyCortex: Exploring Single-Cell Transcriptome Data From the Developing Human Cortex

Kageyama, J., Wollny, D., Treutlein, B., & Camp, J. G. (2018) · Frontiers in Neuroscience · doi:10.3389/fnins.2018.00315 · Cited by 9

Identification of cell types in a mouse brain single-cell atlas using low sampling coverage

Bhaduri, A., Nowakowski, T. J., Pollen, A. A., & Kriegstein, A. R. (2018) · BMC Biology · doi:10.1186/s12915-018-0580-x · Cited by 15

The Technology and Biology of Single-Cell RNA Sequencing

Kolodziejczyk, A. A., Kim, J. K., Svensson, V., Marioni, J. C., & Teichmann, S. A. (2015) · Molecular Cell · doi:10.1016/j.molcel.2015.04.005 · Cited by 1,487

Multiplexed Single Cell mRNA Sequencing Analysis of Mouse Embryonic Cells

Feng, W., Przysinda, A., & Li, G. (2020) · Journal of Visualized Experiments · doi:10.3791/60647-v · Cited by 2

Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding

Rosenberg, A. B., Roco, C. M., Muscat, R. A., Kuchina, A., Sample, P., Yao, Z., Graybuck, L. T., Peeler, D. J., Mukherjee, S., Chen, W., et al. (2018) · Science · doi:10.1126/science.aam8999 · Cited by 1,422